ISSydi1

  • Family ISNCY
  • Group ISDol1
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
BBRT01000208 ND Candidatus Symbiothrix
Candidatus Symbiothrix dinenymphae
DNA section
IS Length : 1922 bp

Ends


IR Length : 20/22

IRL : TGATTATCCGCAATCATACCACTAAATAGTGTCTGTCCATAAATTATAAA
IRR : TGACTATCCGCAATTATACCACTTGGCGTTCGCTCCTTGTCCCGCAGGGA

Insertion site


Left flankDirect repeatRight flankDR Length
GTTTGGTATGATAAAAG/-TAAAAATCACCGCG8

DNA sequence

TGATTATCCGCAATCATACCACTAAATAGTGTCTGTCCATAAATTATAAATATCAGACAGTAAAAGTTTTAAGTATCAAAAAAAATATTACTTTTGCGGC
ATGAAAATGCAATTATTCGAGCCGTTACGGCTGAAATTTGAGAGTGCGAATTGGGCAAAGAACCCTGAATTAGGGCTGTTTGACACGATTTTAGAGCTTC
ATCCTGAGTTGATCAAGCTCGTTGAGGCAGATGTAGTGAAAGGGTGTAAATTGAGCAAATTTGGTCGCCAAGATATGCCAAGTGTAGAACAGATTATGCG
AGCTGCGATATATAAGGAGGTTAAGGGTTTGGATTACAGGGAGTTAGAGGAGGCACAAGAAGATTCGCGCATTTGCGAACAGTTTCTTAAGATAGACTCA
TTACGTCCGTATAGTTTTCAGGTGTACCAGAAGTATATATCGAAAATTACAGCAGATAGTTTGGAGAAGTTATTGGTAGAGATCAACAAGATAGCTATAT
CTGAAGGCTTAGAAGATGTACAAAAATTGCGTCAGGATAGCACAGTAGTTGAAACAAATATTCATTATCCAACGAATAATTCATTGATTTGGGATTGCAT
CAAAGAAAGTCATCGGTTGCTTACGCAATTGAATGAAGAAGTACAAGTAGCTAATTTTAGGGACTATAGGAAAAATGCTAAAAGGACTTACTTTCTGATA
AACAACACAAAATCAAGTAAAAAAAGTAAGAAAAAAGCTTCACCGGAAACGGCAACAGAAGCTCTTGATAAACGCACAGAATTGTTTAGAAGACAGCTTA
TTACGTTTACCAAATGCATCAATCAAGTATCAAACGTAGTAAAAAAAAAGGACATATATAATGTAACACCCGCAGCATTTGCTTTGTTATCACAATTGGA
ATTTTTTGTGTTTGTGATGCGACAGGTTTACGATATGACGCAACGGCATGAAATTAAGGGAGAAACGGTTTCCAATGCTGAAAAAATATTTTCCATTTAC
GAACAGCATACCGACATCATTGTGAAAGGGCAACGCGAAGTGCAGTTTGGACACAAAGTAGATTTGGCATCCGGGCGAAGCAACCTGATATTGGGCTGTG
ACGTATGTCTGGGCAATCCGGCAGACAGTTCTCTTTATCAAGGGATGGTTGACAAGGTGATAAAAGATTATGGCATAGTCCCTCGCGACAGTGCTACCGA
TGGCGGTTATGCCTCCAAATCCAACATGGAATATGCTCTGAGTAAGGGGATTAGGAACGTTGTGTTCAACAAGATAGTAGGAAGTTTACGGAACGTAGTG
AGCAGCAAAAACATGGAAACGCGCTTGAAAAAGTGGCGTAGCGGTATGGAAGCGGTTATTTCGAACGTCAAACGGGGCTATGATTTGTTTCGATGCAACT
GGAAAGGGCAAGCGCATTTTGCACAAAAGGTGCTTTGGAGTGTCATTGCATACAATATTAGAGTGATGACTGCCAAAGTCATATTGTCTATATAAACAGC
TGATAATCAGAATATTAACAAACTCAAAGGGGTGGATTATGTCTTGACAGCTCAAAAAAGTCAAAAAATGGGGTCAAAAAATGTTTTGGGGGCAGATGAA
CTCAAAATATGACAAAAAACGGTCTCATTTTGTCTGTGTACGAGAAGTTTGAAGGGGACGAAGTCCTTCAAAAAATATAAAAGACGGACTGTATGGACAA
ACTCTAAATAGCGTTCCCTGCAAGCAGTTTCCGGTTTTTGTCCCGCAGGGACAGCACTTTATTAACCGTAGACTTTAGTCTACGGATGTGACGGAGCCCA
CACCCCAAAGTCCCGCATGGGACGACACATTGTTTATACCGTAGACTAAAGTCTACGGTTAATAAAGTGCTGTCCCTGCGGGACAAGGAGCGAACGCCAA
GTGGTATAATTGCGGATAGTCA
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1395 bp464 aa1011495+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MKMQLFEPLRLKFESANWAKNPELGLFDTILELHPELIKLVEADVVKGCKLSKFGRQDMPSVEQIMRAAIYKEVKGLDYRELEEAQEDSRICEQFLKIDS
LRPYSFQVYQKYISKITADSLEKLLVEINKIAISEGLEDVQKLRQDSTVVETNIHYPTNNSLIWDCIKESHRLLTQLNEEVQVANFRDYRKNAKRTYFLI
NNTKSSKKSKKKASPETATEALDKRTELFRRQLITFTKCINQVSNVVKKKDIYNVTPAAFALLSQLEFFVFVMRQVYDMTQRHEIKGETVSNAEKIFSIY
EQHTDIIVKGQREVQFGHKVDLASGRSNLILGCDVCLGNPADSSLYQGMVDKVIKDYGIVPRDSATDGGYASKSNMEYALSKGIRNVVFNKIVGSLRNVV
SSKNMETRLKKWRSGMEAVISNVKRGYDLFRCNWKGQAHFAQKVLWSVIAYNIRVMTAKVILSI

 

Blast result :
Comments
ISSydi1 is 53% aa similar to ISRle10.
References
1] ISfinder annotation (2016)
2] Yuki,M., Kuwahara,H., Shintani,M., Izawa,K., Sato,T., Starns,D., Hongoh,Y. and Ohkuma,M. (2015) Environ. Microbiol. 17 (12)