ISSydi1
- Family ISNCY
- Group ISDol1
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
BBRT01000208 | ND | Candidatus Symbiothrix | Candidatus Symbiothrix dinenymphae |
DNA section
IS Length : 1922 bp
Ends
IR Length : 20/22
IRL : TGATTATCCGCAATCATACCACTAAATAGTGTCTGTCCATAAATTATAAA
IRR : TGACTATCCGCAATTATACCACTTGGCGTTCGCTCCTTGTCCCGCAGGGA
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
GTTTGGTATGA | TAAAAG/-TAA | AAATCACCGCG | 8 |
DNA sequence
TGATTATCCGCAATCATACCACTAAATAGTGTCTGTCCATAAATTATAAATATCAGACAGTAAAAGTTTTAAGTATCAAAAAAAATATTACTTTTGCGGC
ATGAAAATGCAATTATTCGAGCCGTTACGGCTGAAATTTGAGAGTGCGAATTGGGCAAAGAACCCTGAATTAGGGCTGTTTGACACGATTTTAGAGCTTC
ATCCTGAGTTGATCAAGCTCGTTGAGGCAGATGTAGTGAAAGGGTGTAAATTGAGCAAATTTGGTCGCCAAGATATGCCAAGTGTAGAACAGATTATGCG
AGCTGCGATATATAAGGAGGTTAAGGGTTTGGATTACAGGGAGTTAGAGGAGGCACAAGAAGATTCGCGCATTTGCGAACAGTTTCTTAAGATAGACTCA
TTACGTCCGTATAGTTTTCAGGTGTACCAGAAGTATATATCGAAAATTACAGCAGATAGTTTGGAGAAGTTATTGGTAGAGATCAACAAGATAGCTATAT
CTGAAGGCTTAGAAGATGTACAAAAATTGCGTCAGGATAGCACAGTAGTTGAAACAAATATTCATTATCCAACGAATAATTCATTGATTTGGGATTGCAT
CAAAGAAAGTCATCGGTTGCTTACGCAATTGAATGAAGAAGTACAAGTAGCTAATTTTAGGGACTATAGGAAAAATGCTAAAAGGACTTACTTTCTGATA
AACAACACAAAATCAAGTAAAAAAAGTAAGAAAAAAGCTTCACCGGAAACGGCAACAGAAGCTCTTGATAAACGCACAGAATTGTTTAGAAGACAGCTTA
TTACGTTTACCAAATGCATCAATCAAGTATCAAACGTAGTAAAAAAAAAGGACATATATAATGTAACACCCGCAGCATTTGCTTTGTTATCACAATTGGA
ATTTTTTGTGTTTGTGATGCGACAGGTTTACGATATGACGCAACGGCATGAAATTAAGGGAGAAACGGTTTCCAATGCTGAAAAAATATTTTCCATTTAC
GAACAGCATACCGACATCATTGTGAAAGGGCAACGCGAAGTGCAGTTTGGACACAAAGTAGATTTGGCATCCGGGCGAAGCAACCTGATATTGGGCTGTG
ACGTATGTCTGGGCAATCCGGCAGACAGTTCTCTTTATCAAGGGATGGTTGACAAGGTGATAAAAGATTATGGCATAGTCCCTCGCGACAGTGCTACCGA
TGGCGGTTATGCCTCCAAATCCAACATGGAATATGCTCTGAGTAAGGGGATTAGGAACGTTGTGTTCAACAAGATAGTAGGAAGTTTACGGAACGTAGTG
AGCAGCAAAAACATGGAAACGCGCTTGAAAAAGTGGCGTAGCGGTATGGAAGCGGTTATTTCGAACGTCAAACGGGGCTATGATTTGTTTCGATGCAACT
GGAAAGGGCAAGCGCATTTTGCACAAAAGGTGCTTTGGAGTGTCATTGCATACAATATTAGAGTGATGACTGCCAAAGTCATATTGTCTATATAAACAGC
TGATAATCAGAATATTAACAAACTCAAAGGGGTGGATTATGTCTTGACAGCTCAAAAAAGTCAAAAAATGGGGTCAAAAAATGTTTTGGGGGCAGATGAA
CTCAAAATATGACAAAAAACGGTCTCATTTTGTCTGTGTACGAGAAGTTTGAAGGGGACGAAGTCCTTCAAAAAATATAAAAGACGGACTGTATGGACAA
ACTCTAAATAGCGTTCCCTGCAAGCAGTTTCCGGTTTTTGTCCCGCAGGGACAGCACTTTATTAACCGTAGACTTTAGTCTACGGATGTGACGGAGCCCA
CACCCCAAAGTCCCGCATGGGACGACACATTGTTTATACCGTAGACTAAAGTCTACGGTTAATAAAGTGCTGTCCCTGCGGGACAAGGAGCGAACGCCAA
GTGGTATAATTGCGGATAGTCA
ATGAAAATGCAATTATTCGAGCCGTTACGGCTGAAATTTGAGAGTGCGAATTGGGCAAAGAACCCTGAATTAGGGCTGTTTGACACGATTTTAGAGCTTC
ATCCTGAGTTGATCAAGCTCGTTGAGGCAGATGTAGTGAAAGGGTGTAAATTGAGCAAATTTGGTCGCCAAGATATGCCAAGTGTAGAACAGATTATGCG
AGCTGCGATATATAAGGAGGTTAAGGGTTTGGATTACAGGGAGTTAGAGGAGGCACAAGAAGATTCGCGCATTTGCGAACAGTTTCTTAAGATAGACTCA
TTACGTCCGTATAGTTTTCAGGTGTACCAGAAGTATATATCGAAAATTACAGCAGATAGTTTGGAGAAGTTATTGGTAGAGATCAACAAGATAGCTATAT
CTGAAGGCTTAGAAGATGTACAAAAATTGCGTCAGGATAGCACAGTAGTTGAAACAAATATTCATTATCCAACGAATAATTCATTGATTTGGGATTGCAT
CAAAGAAAGTCATCGGTTGCTTACGCAATTGAATGAAGAAGTACAAGTAGCTAATTTTAGGGACTATAGGAAAAATGCTAAAAGGACTTACTTTCTGATA
AACAACACAAAATCAAGTAAAAAAAGTAAGAAAAAAGCTTCACCGGAAACGGCAACAGAAGCTCTTGATAAACGCACAGAATTGTTTAGAAGACAGCTTA
TTACGTTTACCAAATGCATCAATCAAGTATCAAACGTAGTAAAAAAAAAGGACATATATAATGTAACACCCGCAGCATTTGCTTTGTTATCACAATTGGA
ATTTTTTGTGTTTGTGATGCGACAGGTTTACGATATGACGCAACGGCATGAAATTAAGGGAGAAACGGTTTCCAATGCTGAAAAAATATTTTCCATTTAC
GAACAGCATACCGACATCATTGTGAAAGGGCAACGCGAAGTGCAGTTTGGACACAAAGTAGATTTGGCATCCGGGCGAAGCAACCTGATATTGGGCTGTG
ACGTATGTCTGGGCAATCCGGCAGACAGTTCTCTTTATCAAGGGATGGTTGACAAGGTGATAAAAGATTATGGCATAGTCCCTCGCGACAGTGCTACCGA
TGGCGGTTATGCCTCCAAATCCAACATGGAATATGCTCTGAGTAAGGGGATTAGGAACGTTGTGTTCAACAAGATAGTAGGAAGTTTACGGAACGTAGTG
AGCAGCAAAAACATGGAAACGCGCTTGAAAAAGTGGCGTAGCGGTATGGAAGCGGTTATTTCGAACGTCAAACGGGGCTATGATTTGTTTCGATGCAACT
GGAAAGGGCAAGCGCATTTTGCACAAAAGGTGCTTTGGAGTGTCATTGCATACAATATTAGAGTGATGACTGCCAAAGTCATATTGTCTATATAAACAGC
TGATAATCAGAATATTAACAAACTCAAAGGGGTGGATTATGTCTTGACAGCTCAAAAAAGTCAAAAAATGGGGTCAAAAAATGTTTTGGGGGCAGATGAA
CTCAAAATATGACAAAAAACGGTCTCATTTTGTCTGTGTACGAGAAGTTTGAAGGGGACGAAGTCCTTCAAAAAATATAAAAGACGGACTGTATGGACAA
ACTCTAAATAGCGTTCCCTGCAAGCAGTTTCCGGTTTTTGTCCCGCAGGGACAGCACTTTATTAACCGTAGACTTTAGTCTACGGATGTGACGGAGCCCA
CACCCCAAAGTCCCGCATGGGACGACACATTGTTTATACCGTAGACTAAAGTCTACGGTTAATAAAGTGCTGTCCCTGCGGGACAAGGAGCGAACGCCAA
GTGGTATAATTGCGGATAGTCA
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1395 bp | 464 aa | 101 | 1495 | + | No |
Chemistry : DDE
ORF sequence :
MKMQLFEPLRLKFESANWAKNPELGLFDTILELHPELIKLVEADVVKGCKLSKFGRQDMPSVEQIMRAAIYKEVKGLDYRELEEAQEDSRICEQFLKIDS
LRPYSFQVYQKYISKITADSLEKLLVEINKIAISEGLEDVQKLRQDSTVVETNIHYPTNNSLIWDCIKESHRLLTQLNEEVQVANFRDYRKNAKRTYFLI
NNTKSSKKSKKKASPETATEALDKRTELFRRQLITFTKCINQVSNVVKKKDIYNVTPAAFALLSQLEFFVFVMRQVYDMTQRHEIKGETVSNAEKIFSIY
EQHTDIIVKGQREVQFGHKVDLASGRSNLILGCDVCLGNPADSSLYQGMVDKVIKDYGIVPRDSATDGGYASKSNMEYALSKGIRNVVFNKIVGSLRNVV
SSKNMETRLKKWRSGMEAVISNVKRGYDLFRCNWKGQAHFAQKVLWSVIAYNIRVMTAKVILSI
LRPYSFQVYQKYISKITADSLEKLLVEINKIAISEGLEDVQKLRQDSTVVETNIHYPTNNSLIWDCIKESHRLLTQLNEEVQVANFRDYRKNAKRTYFLI
NNTKSSKKSKKKASPETATEALDKRTELFRRQLITFTKCINQVSNVVKKKDIYNVTPAAFALLSQLEFFVFVMRQVYDMTQRHEIKGETVSNAEKIFSIY
EQHTDIIVKGQREVQFGHKVDLASGRSNLILGCDVCLGNPADSSLYQGMVDKVIKDYGIVPRDSATDGGYASKSNMEYALSKGIRNVVFNKIVGSLRNVV
SSKNMETRLKKWRSGMEAVISNVKRGYDLFRCNWKGQAHFAQKVLWSVIAYNIRVMTAKVILSI
Blast result :
Comments
ISSydi1 is 53% aa similar to ISRle10.
References
1] ISfinder annotation (2016)
2] Yuki,M., Kuwahara,H., Shintani,M., Izawa,K., Sato,T., Starns,D., Hongoh,Y. and Ohkuma,M. (2015) Environ. Microbiol. 17 (12)
2] Yuki,M., Kuwahara,H., Shintani,M., Izawa,K., Sato,T., Starns,D., Hongoh,Y. and Ohkuma,M. (2015) Environ. Microbiol. 17 (12)