ISDes1

  • Family ISNCY
  • Group ISDol1
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
JROS01000084 ND Desulfobulbus sp.
Desulfobulbus sp. Tol-SR
DNA section
IS Length : 1673 bp

Ends


IR Length : 18/19

IRL : GTGTCCATCCGGAAACTCCAACATGCTGATATTTATTAAATTTCCGGCAT
IRR : GTGTCCATCCGGAAACCCCTGTTTTGGATAAACAGAGGGCCTGAATAGGT

Insertion site


Left flankDirect repeatRight flankDR Length
CCAGGCTCACTAGTTAGTGTCTGTCC6

DNA sequence

GTGTCCATCCGGAAACTCCAACATGCTGATATTTATTAAATTTCCGGCATAATTTGATAGGATTGTATGGCGATGCATGGTAGTATGCGGTATCAAATTA
CATGATATCATTGGCTAACTTCCATCGGAGTCTTGAACCATGCGTCTAAAATTCAACCCGCAATTGAATCTGTTTACCAGCGTGGGTCGCAATCAGATTG
CCAAGGAATTGCAACTGATGTCCCAGGTACTCGATGCGACCCCGAGCATGTTGGATATGGTGTACCGGGACATCGTCCGTTCCATCTCTACCCGCACCGG
TCGCAAAGGAATGACGGCAGACCAGGTCCTTCGTTGTGCCATCCTCAAACAGTACCGCCAACTCACCTATGAGGAGCTGGCTTTTCATTTGGAAGACTCA
AGCTCTTTCCGCGGTTTCGCTCGCCTGGATCCGGGACAATACCCCGGCAAGTCAATTCTGCAGGAGAACATCAAGGGCCTTCGGGAGGAAACCTGGGAGG
CGATCAACCAGGCGATTGTCGGTTACGCCCAGCAGGAAAAGATCGAGTCCGGCCGCAAGGTACGGATCGATGCCACCGCCGTGGAGACCGACATCCATCA
CCCCACCGACGCTACCCTGCTGGCCGATGGAATTCGCATCATCACCCGCTGGCTGATCAGGGGTAAAGAGTTGTCTCCGACTCCCCGCTATATGTACAGC
GACCATCGGCGGGTAGTCAAGAAGCGGCTTATGGTCATCCTCAACACCAACAAGGAAAGAGTTCGCCAAGAGGCCTACCGGGATCTTCTGCTGTATGCCG
ACAAGGTCAGGGCGTATGCCTTGGTGGCCATCCCCGAGCTTTCATCCCATCAATCGAACGAGATGGCTGAACTCTTTGCCGGAAGAGTCTTGGCCGAGAA
ACTGGCACGGGCCGTGGACATTCTCGGCAGGGTGATGGATCAGACTGAGCGACGAGTTTTCAAGAAGGAGCATGTCCCTGCCTCGGAGAAAGTGGTCTCC
TTTTTTGAGACCCACACCGATATCATCGTCAAAAAGCGCCGTGAGACGGAGTTTGGACACAAGATCTTTGTCACGGGTGGAGTTTCGTCGATGATCCTTG
ATTGCCTTATTGTCCGCGGAAATCCTGCCGACACATCCCAGTACCAATCGTTGCTGATGCGGCAGCAGGAGATTTACGACCGCATGCCCCGGCAGGTGTC
GGCTGACGGTGGTTTCGCCTCGAAGGCCAATCTTGCCTTCGCCAAGGGACATCACGTCAAGGACGCGGTGTTTGCCAAAAAGCGCGGACTGTCGGTCATC
GACATGGCCAAGAGTGCCTGGGTGTACAAAAAGCTGCGCAACTTCCGGGCCGGCATCGAGGCGGGAATCTCGACCCTGAAACGCGCCTTCGGTCTTGACC
GCTGCACCTGGAAGGGATGGGAAGGTTTCGGCCGCTACGTTTGGAGCGCAGTTGTCTCCTACAACCTTCTTGTGCTGGCCAGGACAAAGCTGGCTTCAGC
CTGAAACACCCCGTCCGGTTTTGAGAATTTACCCGTTTGAGGGGATCCTATGCCCTGAATCCGGTCAACAGCGGTGAAAATCCGATGAGTTCCATTGGCT
GATTGCCATAAGAGGACTTTTGCACCTATTCAGGCCCTCTGTTTATCCAAAACAGGGGTTTCCGGATGGACAC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1365 bp454 aa1401504+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MRLKFNPQLNLFTSVGRNQIAKELQLMSQVLDATPSMLDMVYRDIVRSISTRTGRKGMTADQVLRCAILKQYRQLTYEELAFHLEDSSSFRGFARLDPGQ
YPGKSILQENIKGLREETWEAINQAIVGYAQQEKIESGRKVRIDATAVETDIHHPTDATLLADGIRIITRWLIRGKELSPTPRYMYSDHRRVVKKRLMVI
LNTNKERVRQEAYRDLLLYADKVRAYALVAIPELSSHQSNEMAELFAGRVLAEKLARAVDILGRVMDQTERRVFKKEHVPASEKVVSFFETHTDIIVKKR
RETEFGHKIFVTGGVSSMILDCLIVRGNPADTSQYQSLLMRQQEIYDRMPRQVSADGGFASKANLAFAKGHHVKDAVFAKKRGLSVIDMAKSAWVYKKLR
NFRAGIEAGISTLKRAFGLDRCTWKGWEGFGRYVWSAVVSYNLLVLARTKLASA

 

Blast result :
Comments
ISDes1 is 69% aa similar to ISDth2.
References
1] ISfinder annotation (2016)
2] Abu Laban,N., Tan,B., Dao,A. and Foght,J. (2015) Genome Announc 3 (1).