ISDes1
- Family ISNCY
- Group ISDol1
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
JROS01000084 | ND | Desulfobulbus sp. | Desulfobulbus sp. Tol-SR |
DNA section
IS Length : 1673 bp
Ends
IR Length : 18/19
IRL : GTGTCCATCCGGAAACTCCAACATGCTGATATTTATTAAATTTCCGGCAT
IRR : GTGTCCATCCGGAAACCCCTGTTTTGGATAAACAGAGGGCCTGAATAGGT
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
CCAGGCTCAC | TAGTTA | GTGTCTGTCC | 6 |
DNA sequence
GTGTCCATCCGGAAACTCCAACATGCTGATATTTATTAAATTTCCGGCATAATTTGATAGGATTGTATGGCGATGCATGGTAGTATGCGGTATCAAATTA
CATGATATCATTGGCTAACTTCCATCGGAGTCTTGAACCATGCGTCTAAAATTCAACCCGCAATTGAATCTGTTTACCAGCGTGGGTCGCAATCAGATTG
CCAAGGAATTGCAACTGATGTCCCAGGTACTCGATGCGACCCCGAGCATGTTGGATATGGTGTACCGGGACATCGTCCGTTCCATCTCTACCCGCACCGG
TCGCAAAGGAATGACGGCAGACCAGGTCCTTCGTTGTGCCATCCTCAAACAGTACCGCCAACTCACCTATGAGGAGCTGGCTTTTCATTTGGAAGACTCA
AGCTCTTTCCGCGGTTTCGCTCGCCTGGATCCGGGACAATACCCCGGCAAGTCAATTCTGCAGGAGAACATCAAGGGCCTTCGGGAGGAAACCTGGGAGG
CGATCAACCAGGCGATTGTCGGTTACGCCCAGCAGGAAAAGATCGAGTCCGGCCGCAAGGTACGGATCGATGCCACCGCCGTGGAGACCGACATCCATCA
CCCCACCGACGCTACCCTGCTGGCCGATGGAATTCGCATCATCACCCGCTGGCTGATCAGGGGTAAAGAGTTGTCTCCGACTCCCCGCTATATGTACAGC
GACCATCGGCGGGTAGTCAAGAAGCGGCTTATGGTCATCCTCAACACCAACAAGGAAAGAGTTCGCCAAGAGGCCTACCGGGATCTTCTGCTGTATGCCG
ACAAGGTCAGGGCGTATGCCTTGGTGGCCATCCCCGAGCTTTCATCCCATCAATCGAACGAGATGGCTGAACTCTTTGCCGGAAGAGTCTTGGCCGAGAA
ACTGGCACGGGCCGTGGACATTCTCGGCAGGGTGATGGATCAGACTGAGCGACGAGTTTTCAAGAAGGAGCATGTCCCTGCCTCGGAGAAAGTGGTCTCC
TTTTTTGAGACCCACACCGATATCATCGTCAAAAAGCGCCGTGAGACGGAGTTTGGACACAAGATCTTTGTCACGGGTGGAGTTTCGTCGATGATCCTTG
ATTGCCTTATTGTCCGCGGAAATCCTGCCGACACATCCCAGTACCAATCGTTGCTGATGCGGCAGCAGGAGATTTACGACCGCATGCCCCGGCAGGTGTC
GGCTGACGGTGGTTTCGCCTCGAAGGCCAATCTTGCCTTCGCCAAGGGACATCACGTCAAGGACGCGGTGTTTGCCAAAAAGCGCGGACTGTCGGTCATC
GACATGGCCAAGAGTGCCTGGGTGTACAAAAAGCTGCGCAACTTCCGGGCCGGCATCGAGGCGGGAATCTCGACCCTGAAACGCGCCTTCGGTCTTGACC
GCTGCACCTGGAAGGGATGGGAAGGTTTCGGCCGCTACGTTTGGAGCGCAGTTGTCTCCTACAACCTTCTTGTGCTGGCCAGGACAAAGCTGGCTTCAGC
CTGAAACACCCCGTCCGGTTTTGAGAATTTACCCGTTTGAGGGGATCCTATGCCCTGAATCCGGTCAACAGCGGTGAAAATCCGATGAGTTCCATTGGCT
GATTGCCATAAGAGGACTTTTGCACCTATTCAGGCCCTCTGTTTATCCAAAACAGGGGTTTCCGGATGGACAC
CATGATATCATTGGCTAACTTCCATCGGAGTCTTGAACCATGCGTCTAAAATTCAACCCGCAATTGAATCTGTTTACCAGCGTGGGTCGCAATCAGATTG
CCAAGGAATTGCAACTGATGTCCCAGGTACTCGATGCGACCCCGAGCATGTTGGATATGGTGTACCGGGACATCGTCCGTTCCATCTCTACCCGCACCGG
TCGCAAAGGAATGACGGCAGACCAGGTCCTTCGTTGTGCCATCCTCAAACAGTACCGCCAACTCACCTATGAGGAGCTGGCTTTTCATTTGGAAGACTCA
AGCTCTTTCCGCGGTTTCGCTCGCCTGGATCCGGGACAATACCCCGGCAAGTCAATTCTGCAGGAGAACATCAAGGGCCTTCGGGAGGAAACCTGGGAGG
CGATCAACCAGGCGATTGTCGGTTACGCCCAGCAGGAAAAGATCGAGTCCGGCCGCAAGGTACGGATCGATGCCACCGCCGTGGAGACCGACATCCATCA
CCCCACCGACGCTACCCTGCTGGCCGATGGAATTCGCATCATCACCCGCTGGCTGATCAGGGGTAAAGAGTTGTCTCCGACTCCCCGCTATATGTACAGC
GACCATCGGCGGGTAGTCAAGAAGCGGCTTATGGTCATCCTCAACACCAACAAGGAAAGAGTTCGCCAAGAGGCCTACCGGGATCTTCTGCTGTATGCCG
ACAAGGTCAGGGCGTATGCCTTGGTGGCCATCCCCGAGCTTTCATCCCATCAATCGAACGAGATGGCTGAACTCTTTGCCGGAAGAGTCTTGGCCGAGAA
ACTGGCACGGGCCGTGGACATTCTCGGCAGGGTGATGGATCAGACTGAGCGACGAGTTTTCAAGAAGGAGCATGTCCCTGCCTCGGAGAAAGTGGTCTCC
TTTTTTGAGACCCACACCGATATCATCGTCAAAAAGCGCCGTGAGACGGAGTTTGGACACAAGATCTTTGTCACGGGTGGAGTTTCGTCGATGATCCTTG
ATTGCCTTATTGTCCGCGGAAATCCTGCCGACACATCCCAGTACCAATCGTTGCTGATGCGGCAGCAGGAGATTTACGACCGCATGCCCCGGCAGGTGTC
GGCTGACGGTGGTTTCGCCTCGAAGGCCAATCTTGCCTTCGCCAAGGGACATCACGTCAAGGACGCGGTGTTTGCCAAAAAGCGCGGACTGTCGGTCATC
GACATGGCCAAGAGTGCCTGGGTGTACAAAAAGCTGCGCAACTTCCGGGCCGGCATCGAGGCGGGAATCTCGACCCTGAAACGCGCCTTCGGTCTTGACC
GCTGCACCTGGAAGGGATGGGAAGGTTTCGGCCGCTACGTTTGGAGCGCAGTTGTCTCCTACAACCTTCTTGTGCTGGCCAGGACAAAGCTGGCTTCAGC
CTGAAACACCCCGTCCGGTTTTGAGAATTTACCCGTTTGAGGGGATCCTATGCCCTGAATCCGGTCAACAGCGGTGAAAATCCGATGAGTTCCATTGGCT
GATTGCCATAAGAGGACTTTTGCACCTATTCAGGCCCTCTGTTTATCCAAAACAGGGGTTTCCGGATGGACAC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1365 bp | 454 aa | 140 | 1504 | + | No |
Chemistry : DDE
ORF sequence :
MRLKFNPQLNLFTSVGRNQIAKELQLMSQVLDATPSMLDMVYRDIVRSISTRTGRKGMTADQVLRCAILKQYRQLTYEELAFHLEDSSSFRGFARLDPGQ
YPGKSILQENIKGLREETWEAINQAIVGYAQQEKIESGRKVRIDATAVETDIHHPTDATLLADGIRIITRWLIRGKELSPTPRYMYSDHRRVVKKRLMVI
LNTNKERVRQEAYRDLLLYADKVRAYALVAIPELSSHQSNEMAELFAGRVLAEKLARAVDILGRVMDQTERRVFKKEHVPASEKVVSFFETHTDIIVKKR
RETEFGHKIFVTGGVSSMILDCLIVRGNPADTSQYQSLLMRQQEIYDRMPRQVSADGGFASKANLAFAKGHHVKDAVFAKKRGLSVIDMAKSAWVYKKLR
NFRAGIEAGISTLKRAFGLDRCTWKGWEGFGRYVWSAVVSYNLLVLARTKLASA
YPGKSILQENIKGLREETWEAINQAIVGYAQQEKIESGRKVRIDATAVETDIHHPTDATLLADGIRIITRWLIRGKELSPTPRYMYSDHRRVVKKRLMVI
LNTNKERVRQEAYRDLLLYADKVRAYALVAIPELSSHQSNEMAELFAGRVLAEKLARAVDILGRVMDQTERRVFKKEHVPASEKVVSFFETHTDIIVKKR
RETEFGHKIFVTGGVSSMILDCLIVRGNPADTSQYQSLLMRQQEIYDRMPRQVSADGGFASKANLAFAKGHHVKDAVFAKKRGLSVIDMAKSAWVYKKLR
NFRAGIEAGISTLKRAFGLDRCTWKGWEGFGRYVWSAVVSYNLLVLARTKLASA
Blast result :
Comments
ISDes1 is 69% aa similar to ISDth2.
References
1] ISfinder annotation (2016)
2] Abu Laban,N., Tan,B., Dao,A. and Foght,J. (2015) Genome Announc 3 (1).
2] Abu Laban,N., Tan,B., Dao,A. and Foght,J. (2015) Genome Announc 3 (1).