ISAcde1

  • Family IS1595
  • Group ISSod11
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
ACQT01000538 ND Acidovorax delafieldii
Acidovorax delafieldii 2AN
DNA section
IS Length : 1088 bp

Ends


IR Length : 28/34

IRL : AAGGGGTATCCATTTAGCTCCAGTGGCGCCAGAATAGCTGGATGGAAACC
IRR : AAGGGGTATCCACTTAGCTCCAGCGACCCCTCAAACACTGTGATTGCATC

Insertion site


Left flankDirect repeatRight flankDR Length

DNA sequence

AAGGGGTATCCATTTAGCTCCAGTGGCGCCAGAATAGCTGGATGGAAACCCAGATGCTAACGCCAACTCCCGGGCAGGACTATCCTCGCACGTGGAACGA
ATTTCTTGACTGGTTTGCCACCGAAGAGGCCTGCCAGGCGTTCCTGGAGAAGCTGCGCTGGCCCGAAGGCTTCATCTGTCCGCGCTGTGGAAATACGGGT
GATGTGTATCGCGCCAGCCGCACCCGCCTGATGTGCCGGGCATGCCAGTACCAGGGCACGGTGACCTCAGGGACCATCTTTGACAAGACGCGTACGCCGC
TGCGGGTGTGGCTGGCTGCGGCGTGGTACCTGACCAATCAGAAGCAAGGCGTGAGCGCCTTGGGACTGCAGCGCGTATTGGGTTTGGGGAGTTACCAGAC
AGCGTGGACCATGTTGCACCGGTTTCGGCGCGCCATGGTCCGCCCGGACCGTGACAAGCTCAAGGGGCTTGTCGAGGTGGATGAAGCCTACCTGTCCATT
ACGGATCGCAAAAATCCCGCCACCCCTGCGGGGCGCAAGAGCAGCACCACCAAAGTGTTGATGGTCATGGCGGTGGAGATCGTGCAGCCCCAGGGGTTTG
GGCGCATCCGATTGCGCCGCATCGACCGAGACTCCGCATCCCACGTCATCCCCTTCGTGCAGGAGGTGGTCGAGCCCGCAGCCCAGATACGCACGGACGG
CTCGGCGGCGTACCGCTCCCTGGGAGAACTGGGTTACATCCACCAGCGCACCGTCATGCTGGGCTCAAGTGTGCCTGCCCATGTGTCCATGGCGGGAGTT
CACCGGGTCGCCTCCTTGGTTCAGCGCTGGGTGCTGGGAACGCACCACGGCTCCGTGCAACCCGAGCACCTGGATGCTTATCTCGATGAATTCGTATTCC
GCTTCAACCGGCGCACATCCAGCTCGCGCGGGATGCTGTTTTACCGCCTACTGCAGCAAGCGGTGGTCACGCCGCCGGTGACGTATGCGGACGTCGTGAG
CAAGAACACCGGTGGGACGCAATCGGATATTATTACTGGATGCAATCACAGTGTTTGAGGGGTCGCTGGAGCTAAGTGGATACCCCTT
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1017 bp338 aa421058+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

METQMLTPTPGQDYPRTWNEFLDWFATEEACQAFLEKLRWPEGFICPRCGNTGDVYRASRTRLMCRACQYQGTVTSGTIFDKTRTPLRVWLAAAWYLTNQ
KQGVSALGLQRVLGLGSYQTAWTMLHRFRRAMVRPDRDKLKGLVEVDEAYLSITDRKNPATPAGRKSSTTKVLMVMAVEIVQPQGFGRIRLRRIDRDSAS
HVIPFVQEVVEPAAQIRTDGSAAYRSLGELGYIHQRTVMLGSSVPAHVSMAGVHRVASLVQRWVLGTHHGSVQPEHLDAYLDEFVFRFNRRTSSSRGMLF
YRLLQQAVVTPPVTYADVVSKNTGGTQSDIITGCNHSV

 

Blast result :
Comments
ISAcde1 is 96% aa similar to ISAisp1.
References