ISGla1

  • Family IS1595
  • Group IS1595
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
BAEK01000042 ND Paraglaciecola agarilytica
Paraglaciecola agarilytica NO2
DNA section
IS Length : 1021 bp

Ends


IR Length : 20/24

IRL : CCTGATTACCCACAATCTTAATCCTCTTCTATACTGTATGAATGAACAGT
IRR : CCTGATTACCCATAAACATCATCCAGCTTTAACAGCCGGTATGGCATCGC

Insertion site


Left flankDirect repeatRight flankDR Length
GAGTATTTGACAATAGGTTAAACCATTAAGACCTCTGGAT0

DNA sequence

CCTGATTACCCACAATCTTAATCCTCTTCTATACTGTATGAATGAACAGTTTATTGGGGAAGTATGTCATGTCAAAGAATCAAGTACAGCATCAGAAAGG
CTATAGCCTATTTGAGTTCATGGAAGACTACGGTAGTGAAGAGCAATGCAGACAGGCGGTATTCGCTTGGCGATTTCCAAATGGTTATGTTTGTAGAGAG
TGCGGACATAAAGGGTTTTGCGTTCTGAAAACACGTAACTTATTGCAGTGTAATCGGTGCAAGCATCAGCACTCACTGATCAGTGGTACCGTATTTTCCA
GTACCAAATTACCCCTGAAGACATGGTTTATGGCCATCCATTTATTGAGCCAGTCAAAGACAGGGTTATCGGCCATGGAGCTGAAGCGTCAGTTGGGTGT
CAACTACGATACTGCGTGGAAGATAAAGCACAAACTGCTTCAAGCGATGAGAGAAAGCGACGACAAACAGCCTATTGAAGGGATTATTCAGCTAGATGAT
GTGTACTGGGGAGGCGAGAGACGCGGGGGAAAGCGCGGTCGGGGCGCCGCAGGAAAGACTCCATTTGTAGCGGCCGTGGCACTCAATAAGGATGGTCATC
CGGTCAAGATGAAAATGAGCGTGGTTAAAGGATTTAGAAGCCAGTGCATCAAAAAATGGGCTAACCAGCATATTAAAGCTGGCAGTCTGGTAATCTCAGA
TGGCTTGCCCTGTTTCAGCGCCATCAATAAGACAAGTAGTGAGCAATTAGGGTTTATAGTCGGCGGGAAACTAGAGTTACTGGACCATCCGGCATTCAAG
TGGGTCAATGTGATGATAGGAAATGTTAAAAATTCACTGCGAGGCAGTTGTCACGCTGTGAAAGCGAATCACTTGCCACGACACTTGGCAGAGCATTGTT
TCAGATTTAACAATCGATTCGACCTTAGAACAATACTACCCAAGCTAGCTAAAGCCGCAGTGCAGACGTCAGCGATGCCATACCGGCTGTTAAAGCTGGA
TGATGTTTATGGGTAATCAGG
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
948 bp315 aa691016+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MSKNQVQHQKGYSLFEFMEDYGSEEQCRQAVFAWRFPNGYVCRECGHKGFCVLKTRNLLQCNRCKHQHSLISGTVFSSTKLPLKTWFMAIHLLSQSKTGL
SAMELKRQLGVNYDTAWKIKHKLLQAMRESDDKQPIEGIIQLDDVYWGGERRGGKRGRGAAGKTPFVAAVALNKDGHPVKMKMSVVKGFRSQCIKKWANQ
HIKAGSLVISDGLPCFSAINKTSSEQLGFIVGGKLELLDHPAFKWVNVMIGNVKNSLRGSCHAVKANHLPRHLAEHCFRFNNRFDLRTILPKLAKAAVQT
SAMPYRLLKLDDVYG

 

Blast result :
Comments
ISGla1 is 81% aa similar to ISKpn3.
References