ISEic2

  • Family IS256
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_012779 ND Edwardsiella ictaluri
Edwardsiella ictaluri 93-146
DNA section
IS Length : 1315 bp

Ends


IR Length : 24/30

IRL : GAGCCTGTACATAAATTTGTGTAATTGCCTGATTTTGATATGTTCAATCC
IRR : GACCCTGTACACGATTCTGTGTAAATGCCTTTTCTCAGAAGTGACCGTCC

Insertion site


Left flankDirect repeatRight flankDR Length
GCGTCCGCAATGGCGCCCTGCATCCTGC8

DNA sequence

GAGCCTGTACATAAATTTGTGTAATTGCCTGATTTTGATATGTTCAATCCAACATCAAAAGCAGGTTACTTTATGAACGAAAAACAGTTGCAGGCTCTGG
CTAACGAACTGGCCAAAAATCTCAAAACCCCTGACGATCTCAGTCAGTTCGATCGCCTGCTGAAGAAAATCAGCGTTGAGGCGGCTCTCAACGCCGAAAT
GTCCCACCATCTGGGCTACGATAAAAATCAGCCTAAACCGGGTGCCAACTCCCGCAATGGCTATTCCACAAAGACCGTTACCACCGGTGATGGCCCTCTG
GAACTACGCACGCCGCGTGATCGTGATGGCTCTTTCGAACCGCAACTGGTGAAGAAAAACCAGACCCGGATCACCGGTATGGATAACCAGATTTTATCGT
TGTACGCCAAAGGGATGACCACCCGCGAGATAGCGGCCGCGTTCAAAGAGCTGTATGACGCTGATGTCTCACCGGCGCTGGTCTCGAAGGTCACCGACGC
CGTAATGGAGCAGGTTACCGAATGGCAAAATCGTCCACTGGATGCAGTCTATCCCATTGTTTACCTTGACTGTATCGTCCTGAAGGTCCGGCAGGACAGT
CGCGTCATTAATAAATCCGTGTTCCTTGCCCTGGGTATCAACCTCGAAGGCCAGAAAGAACTGCTGGGTATGTGGCTGGCCGAAAACGAAGGCGCGAAGT
TCTGGCTCAATGTGCTGACAGAGCTGAAGAATCGCGGCCTGAACGATATCCTCATCGCCTGTGTCGATGGTCTGAAAGGCTTCCCGGACGCGATCAATAC
GGTGTATCCGGAAGCCCGCATCCAGCTGTGCATCGTGCATATGGTGCGTAACAGCCTGCGGTTCGTCTCCTGGAAGGACTACAAAGCCGTCACCCGCGAC
CTGAAAGCCATTTATCAGGCCCCCACGGAAGACGCAGGGCAGCATGCGCTGGAAGCGTTCGCCAGCGCATGGGACAACCGCTACCCGCAGATAAGCCGTA
GCTGGCAGACAAACTGGGCTAACCTGGCGACGTTCTTCGCTTACCCGGCAGACATCCGCAAGGTGATCTACACAACGAATGCTATCGAGTCGCTGAACAG
CGTGATCCGGCATGCCATCAAAAAGCGTAAGGTGTTCCCGACGGACGAAGCAGTGAAAAAGGTGGTGTGGTTAGCGATCCAGGCGGCATCACAGAAATGG
ACCATGCCGCTGAGGGACTGGCGTATGGCAATGAGCCGCTTTATTATCGAGTTCGGTGATCGTCTGGACGGTCACTTCTGAGAAAAGGCATTTACACAGA
ATCGTGTACAGGGTC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1209 bp402 aa731281+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MNEKQLQALANELAKNLKTPDDLSQFDRLLKKISVEAALNAEMSHHLGYDKNQPKPGANSRNGYSTKTVTTGDGPLELRTPRDRDGSFEPQLVKKNQTRI
TGMDNQILSLYAKGMTTREIAAAFKELYDADVSPALVSKVTDAVMEQVTEWQNRPLDAVYPIVYLDCIVLKVRQDSRVINKSVFLALGINLEGQKELLGM
WLAENEGAKFWLNVLTELKNRGLNDILIACVDGLKGFPDAINTVYPEARIQLCIVHMVRNSLRFVSWKDYKAVTRDLKAIYQAPTEDAGQHALEAFASAW
DNRYPQISRSWQTNWANLATFFAYPADIRKVIYTTNAIESLNSVIRHAIKKRKVFPTDEAVKKVVWLAIQAASQKWTMPLRDWRMAMSRFIIEFGDRLDG
HF

 

Blast result :
Comments
ISEic2 is 97% aa similar to ISSoEn2.
References
1] ISfinder annotation (2015)
2] Williams,M.L., Gillaspy,A.F., Dyer,D.W., Thune,R.L., Waldbieser,G.C., Schuster,S.C., Gipson,J., Zaitshik,J., Banes,M.M. and Lawrence,M.L.(2012) J. Bacteriol. 194 (3), 740-741