ISEic2
- Family IS256
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_012779 | ND | Edwardsiella ictaluri | Edwardsiella ictaluri 93-146 |
DNA section
IS Length : 1315 bp
Ends
IR Length : 24/30
IRL : GAGCCTGTACATAAATTTGTGTAATTGCCTGATTTTGATATGTTCAATCC
IRR : GACCCTGTACACGATTCTGTGTAAATGCCTTTTCTCAGAAGTGACCGTCC
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
GCGTCCGCAA | TGGCGCCC | TGCATCCTGC | 8 |
DNA sequence
GAGCCTGTACATAAATTTGTGTAATTGCCTGATTTTGATATGTTCAATCCAACATCAAAAGCAGGTTACTTTATGAACGAAAAACAGTTGCAGGCTCTGG
CTAACGAACTGGCCAAAAATCTCAAAACCCCTGACGATCTCAGTCAGTTCGATCGCCTGCTGAAGAAAATCAGCGTTGAGGCGGCTCTCAACGCCGAAAT
GTCCCACCATCTGGGCTACGATAAAAATCAGCCTAAACCGGGTGCCAACTCCCGCAATGGCTATTCCACAAAGACCGTTACCACCGGTGATGGCCCTCTG
GAACTACGCACGCCGCGTGATCGTGATGGCTCTTTCGAACCGCAACTGGTGAAGAAAAACCAGACCCGGATCACCGGTATGGATAACCAGATTTTATCGT
TGTACGCCAAAGGGATGACCACCCGCGAGATAGCGGCCGCGTTCAAAGAGCTGTATGACGCTGATGTCTCACCGGCGCTGGTCTCGAAGGTCACCGACGC
CGTAATGGAGCAGGTTACCGAATGGCAAAATCGTCCACTGGATGCAGTCTATCCCATTGTTTACCTTGACTGTATCGTCCTGAAGGTCCGGCAGGACAGT
CGCGTCATTAATAAATCCGTGTTCCTTGCCCTGGGTATCAACCTCGAAGGCCAGAAAGAACTGCTGGGTATGTGGCTGGCCGAAAACGAAGGCGCGAAGT
TCTGGCTCAATGTGCTGACAGAGCTGAAGAATCGCGGCCTGAACGATATCCTCATCGCCTGTGTCGATGGTCTGAAAGGCTTCCCGGACGCGATCAATAC
GGTGTATCCGGAAGCCCGCATCCAGCTGTGCATCGTGCATATGGTGCGTAACAGCCTGCGGTTCGTCTCCTGGAAGGACTACAAAGCCGTCACCCGCGAC
CTGAAAGCCATTTATCAGGCCCCCACGGAAGACGCAGGGCAGCATGCGCTGGAAGCGTTCGCCAGCGCATGGGACAACCGCTACCCGCAGATAAGCCGTA
GCTGGCAGACAAACTGGGCTAACCTGGCGACGTTCTTCGCTTACCCGGCAGACATCCGCAAGGTGATCTACACAACGAATGCTATCGAGTCGCTGAACAG
CGTGATCCGGCATGCCATCAAAAAGCGTAAGGTGTTCCCGACGGACGAAGCAGTGAAAAAGGTGGTGTGGTTAGCGATCCAGGCGGCATCACAGAAATGG
ACCATGCCGCTGAGGGACTGGCGTATGGCAATGAGCCGCTTTATTATCGAGTTCGGTGATCGTCTGGACGGTCACTTCTGAGAAAAGGCATTTACACAGA
ATCGTGTACAGGGTC
CTAACGAACTGGCCAAAAATCTCAAAACCCCTGACGATCTCAGTCAGTTCGATCGCCTGCTGAAGAAAATCAGCGTTGAGGCGGCTCTCAACGCCGAAAT
GTCCCACCATCTGGGCTACGATAAAAATCAGCCTAAACCGGGTGCCAACTCCCGCAATGGCTATTCCACAAAGACCGTTACCACCGGTGATGGCCCTCTG
GAACTACGCACGCCGCGTGATCGTGATGGCTCTTTCGAACCGCAACTGGTGAAGAAAAACCAGACCCGGATCACCGGTATGGATAACCAGATTTTATCGT
TGTACGCCAAAGGGATGACCACCCGCGAGATAGCGGCCGCGTTCAAAGAGCTGTATGACGCTGATGTCTCACCGGCGCTGGTCTCGAAGGTCACCGACGC
CGTAATGGAGCAGGTTACCGAATGGCAAAATCGTCCACTGGATGCAGTCTATCCCATTGTTTACCTTGACTGTATCGTCCTGAAGGTCCGGCAGGACAGT
CGCGTCATTAATAAATCCGTGTTCCTTGCCCTGGGTATCAACCTCGAAGGCCAGAAAGAACTGCTGGGTATGTGGCTGGCCGAAAACGAAGGCGCGAAGT
TCTGGCTCAATGTGCTGACAGAGCTGAAGAATCGCGGCCTGAACGATATCCTCATCGCCTGTGTCGATGGTCTGAAAGGCTTCCCGGACGCGATCAATAC
GGTGTATCCGGAAGCCCGCATCCAGCTGTGCATCGTGCATATGGTGCGTAACAGCCTGCGGTTCGTCTCCTGGAAGGACTACAAAGCCGTCACCCGCGAC
CTGAAAGCCATTTATCAGGCCCCCACGGAAGACGCAGGGCAGCATGCGCTGGAAGCGTTCGCCAGCGCATGGGACAACCGCTACCCGCAGATAAGCCGTA
GCTGGCAGACAAACTGGGCTAACCTGGCGACGTTCTTCGCTTACCCGGCAGACATCCGCAAGGTGATCTACACAACGAATGCTATCGAGTCGCTGAACAG
CGTGATCCGGCATGCCATCAAAAAGCGTAAGGTGTTCCCGACGGACGAAGCAGTGAAAAAGGTGGTGTGGTTAGCGATCCAGGCGGCATCACAGAAATGG
ACCATGCCGCTGAGGGACTGGCGTATGGCAATGAGCCGCTTTATTATCGAGTTCGGTGATCGTCTGGACGGTCACTTCTGAGAAAAGGCATTTACACAGA
ATCGTGTACAGGGTC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1209 bp | 402 aa | 73 | 1281 | + | No |
Chemistry : DDE
ORF sequence :
MNEKQLQALANELAKNLKTPDDLSQFDRLLKKISVEAALNAEMSHHLGYDKNQPKPGANSRNGYSTKTVTTGDGPLELRTPRDRDGSFEPQLVKKNQTRI
TGMDNQILSLYAKGMTTREIAAAFKELYDADVSPALVSKVTDAVMEQVTEWQNRPLDAVYPIVYLDCIVLKVRQDSRVINKSVFLALGINLEGQKELLGM
WLAENEGAKFWLNVLTELKNRGLNDILIACVDGLKGFPDAINTVYPEARIQLCIVHMVRNSLRFVSWKDYKAVTRDLKAIYQAPTEDAGQHALEAFASAW
DNRYPQISRSWQTNWANLATFFAYPADIRKVIYTTNAIESLNSVIRHAIKKRKVFPTDEAVKKVVWLAIQAASQKWTMPLRDWRMAMSRFIIEFGDRLDG
HF
TGMDNQILSLYAKGMTTREIAAAFKELYDADVSPALVSKVTDAVMEQVTEWQNRPLDAVYPIVYLDCIVLKVRQDSRVINKSVFLALGINLEGQKELLGM
WLAENEGAKFWLNVLTELKNRGLNDILIACVDGLKGFPDAINTVYPEARIQLCIVHMVRNSLRFVSWKDYKAVTRDLKAIYQAPTEDAGQHALEAFASAW
DNRYPQISRSWQTNWANLATFFAYPADIRKVIYTTNAIESLNSVIRHAIKKRKVFPTDEAVKKVVWLAIQAASQKWTMPLRDWRMAMSRFIIEFGDRLDG
HF
Blast result :
Comments
ISEic2 is 97% aa similar to ISSoEn2.
References
1] ISfinder annotation (2015)
2] Williams,M.L., Gillaspy,A.F., Dyer,D.W., Thune,R.L., Waldbieser,G.C., Schuster,S.C., Gipson,J., Zaitshik,J., Banes,M.M. and Lawrence,M.L.(2012) J. Bacteriol. 194 (3), 740-741
2] Williams,M.L., Gillaspy,A.F., Dyer,D.W., Thune,R.L., Waldbieser,G.C., Schuster,S.C., Gipson,J., Zaitshik,J., Banes,M.M. and Lawrence,M.L.(2012) J. Bacteriol. 194 (3), 740-741