ISGrh1

  • Family ISNCY
  • Group ISDol1
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
BAHC01000079 ND Gordonia rhizosphera
Gordonia rhizosphera NBRC 16068
DNA section
IS Length : 1673 bp

Ends


IR Length : 19/21

IRL : CTTCGACCTGAAAAACTCCACGTGTGTTGGTGGGCCGAAAATCGCCTCTG
IRR : CTTCGACCTGAAAAACCCCGCTGGGGCGGAAGAGCGAATTCCGGCGGCCA

Insertion site


Left flankDirect repeatRight flankDR Length
GGCCGGGAGCTAACTAAAGGGTGGAG6

DNA sequence

CTTCGACCTGAAAAACTCCACGTGTGTTGGTGGGCCGAAAATCGCCTCTGACCTGCAATGATATGTGTATGTCGTTGGGCTGGAAAGGCATTGGGGGTTG
ATGGTGTTTCGGACCGAAGGTGAGCAGCCATCGTTGTTCGAGTCGATGCTGCCTGAGCAGGTGCTGACGCTACCCGATGAGCTCGCACGGGTTGACCGGT
TGCTCGATGATCCGGTGTTCTTCGCCCCCTACGAGCGGTTCTTCCACGAGAAGATCGGTCGCCCGTCGACGCCGATCGAGGTGTATTTGCGGTTGATGTT
TCTGAAGTTCCGCTACGGGATGGGCTATGAGTCGCTGTGCCGGGAGGTGTCGGACTCGATTCATTGGCGGCGGTTCTGCCGGATCCCGCTGGAGTCGGCG
GTACCGCATCCGACCACGTTGATGAAGCTGACCACCCGCTGCGGGCCGCAGGCAGTCGCCCAACTGAACGACGCGTTGCTCGAGAAGGCCACCGAGCAGA
AACTGCTGCGCACCAGCATGGTGCGCGCCGACACGACGGTCGTGCCGGCCAACGTGTCCTATCCCACCGATTCAGGTTTGCTGGCCAAGGCGATCCGTCG
AATCACGTCGACCGGCAGGCGGATTCACGCAGCTGGCGGCGCCACCGCCACGACGGTTCGTGACCGCTCCCGCGCCGCGGGCACCCGCGCGCACGCCATC
GCGGCGAAACTACGGTCCCGCAGCGCGCTGGGCCGCGACGAGAAACTGGCCGCCGTGCAGGCCAGCACCGGACAGTTGGCGGATCTGGCCGAGGTTGCCG
TCGACGATGCCCAACGGTTGCTGACCAACGCCACACGATCCTTGCAGCGGGCCCGGGCACGGGCCAAGCAGCAGCGCGAACGCGGCCTGCGTGACCCAGC
CGCCGGACGCCGTCGCGGGCGGCTGGCACGCGCGGTGGCCGACCTGGAGGAGCTACTCGAAGCGACCACGGCCATCGTCGCCCAGACCCGCACCCGGCTG
TCCGGCGACACCCCGGACGGGGCCACGCGACGGGTCAGTCTGCACGACCCCGATGCCCGCCCGATTGCCAAAGGCCGGCTCGGCAAGCCGGTCGAGTTCG
GGCACAAAGCCCAGCTCGCCGAGGGCGATGACGGGGTCGTTGTGGACTACACCCTCGAACGGGGCAACCCTGCTGATGCACCGCAGTTGGCGCCCGCCGT
GGCCCGCGTGACCGCCCGCAGCGGGCGCGCTCCCCGGGTGGTCACCGCCGACCGCGGCTATGGCGAGGCCAAGGTCGACGCCGCCCTGCACGACCTCGGT
GTGCAGCGTGTCGTCATTCCCCGCAAAGGCCAGCCCGGCACTGCCCGCCGCGCCGCCGAACACTCCCGCGCCTTCCGAAAAACCGTGAAATGGCGGACCG
GGGTCGAAGGCAGAATCAGCACACTCAAACGCGGATACGGTTGGGACAGGACCCGAATCGACACCACTGCGGGAGCCCAGACATGGGTCGGACACGGCAT
CCTCGCCCACAACCTGGTCAAGATCAGCACCCTGGCCGCCCAAGCCGAGGCGGCATGACCGCCCTCGGGCCCCGCCCGGGCCGATCCCGCCGAGACACCG
GGCGGGAAAACGTCCCAGAATCTTGGCCGCCGGAATTCGCTCTTCCGCCCCAGCGGGGTTTTTCAGGTCGAAG
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1413 bp470 aa1461558+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MLPEQVLTLPDELARVDRLLDDPVFFAPYERFFHEKIGRPSTPIEVYLRLMFLKFRYGMGYESLCREVSDSIHWRRFCRIPLESAVPHPTTLMKLTTRCG
PQAVAQLNDALLEKATEQKLLRTSMVRADTTVVPANVSYPTDSGLLAKAIRRITSTGRRIHAAGGATATTVRDRSRAAGTRAHAIAAKLRSRSALGRDEK
LAAVQASTGQLADLAEVAVDDAQRLLTNATRSLQRARARAKQQRERGLRDPAAGRRRGRLARAVADLEELLEATTAIVAQTRTRLSGDTPDGATRRVSLH
DPDARPIAKGRLGKPVEFGHKAQLAEGDDGVVVDYTLERGNPADAPQLAPAVARVTARSGRAPRVVTADRGYGEAKVDAALHDLGVQRVVIPRKGQPGTA
RRAAEHSRAFRKTVKWRTGVEGRISTLKRGYGWDRTRIDTTAGAQTWVGHGILAHNLVKISTLAAQAEAA

 

Blast result :
Comments
ISGrh1 is 84% aa similar to ISRjo3.
References
1] ISfinder annotation (2015)
2] Takarada,H., Isaki,S., Hosoyama,A., Tsuchikane,K., Katsumata,H., Baba,S., Ohji,S., Yamazaki,S. and Fujita,N. (2012) Direct submission GenBank.