ISGrh1
- Family ISNCY
- Group ISDol1
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
BAHC01000079 | ND | Gordonia rhizosphera | Gordonia rhizosphera NBRC 16068 |
DNA section
IS Length : 1673 bp
Ends
IR Length : 19/21
IRL : CTTCGACCTGAAAAACTCCACGTGTGTTGGTGGGCCGAAAATCGCCTCTG
IRR : CTTCGACCTGAAAAACCCCGCTGGGGCGGAAGAGCGAATTCCGGCGGCCA
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
GGCCGGGAGC | TAACTA | AAGGGTGGAG | 6 |
DNA sequence
CTTCGACCTGAAAAACTCCACGTGTGTTGGTGGGCCGAAAATCGCCTCTGACCTGCAATGATATGTGTATGTCGTTGGGCTGGAAAGGCATTGGGGGTTG
ATGGTGTTTCGGACCGAAGGTGAGCAGCCATCGTTGTTCGAGTCGATGCTGCCTGAGCAGGTGCTGACGCTACCCGATGAGCTCGCACGGGTTGACCGGT
TGCTCGATGATCCGGTGTTCTTCGCCCCCTACGAGCGGTTCTTCCACGAGAAGATCGGTCGCCCGTCGACGCCGATCGAGGTGTATTTGCGGTTGATGTT
TCTGAAGTTCCGCTACGGGATGGGCTATGAGTCGCTGTGCCGGGAGGTGTCGGACTCGATTCATTGGCGGCGGTTCTGCCGGATCCCGCTGGAGTCGGCG
GTACCGCATCCGACCACGTTGATGAAGCTGACCACCCGCTGCGGGCCGCAGGCAGTCGCCCAACTGAACGACGCGTTGCTCGAGAAGGCCACCGAGCAGA
AACTGCTGCGCACCAGCATGGTGCGCGCCGACACGACGGTCGTGCCGGCCAACGTGTCCTATCCCACCGATTCAGGTTTGCTGGCCAAGGCGATCCGTCG
AATCACGTCGACCGGCAGGCGGATTCACGCAGCTGGCGGCGCCACCGCCACGACGGTTCGTGACCGCTCCCGCGCCGCGGGCACCCGCGCGCACGCCATC
GCGGCGAAACTACGGTCCCGCAGCGCGCTGGGCCGCGACGAGAAACTGGCCGCCGTGCAGGCCAGCACCGGACAGTTGGCGGATCTGGCCGAGGTTGCCG
TCGACGATGCCCAACGGTTGCTGACCAACGCCACACGATCCTTGCAGCGGGCCCGGGCACGGGCCAAGCAGCAGCGCGAACGCGGCCTGCGTGACCCAGC
CGCCGGACGCCGTCGCGGGCGGCTGGCACGCGCGGTGGCCGACCTGGAGGAGCTACTCGAAGCGACCACGGCCATCGTCGCCCAGACCCGCACCCGGCTG
TCCGGCGACACCCCGGACGGGGCCACGCGACGGGTCAGTCTGCACGACCCCGATGCCCGCCCGATTGCCAAAGGCCGGCTCGGCAAGCCGGTCGAGTTCG
GGCACAAAGCCCAGCTCGCCGAGGGCGATGACGGGGTCGTTGTGGACTACACCCTCGAACGGGGCAACCCTGCTGATGCACCGCAGTTGGCGCCCGCCGT
GGCCCGCGTGACCGCCCGCAGCGGGCGCGCTCCCCGGGTGGTCACCGCCGACCGCGGCTATGGCGAGGCCAAGGTCGACGCCGCCCTGCACGACCTCGGT
GTGCAGCGTGTCGTCATTCCCCGCAAAGGCCAGCCCGGCACTGCCCGCCGCGCCGCCGAACACTCCCGCGCCTTCCGAAAAACCGTGAAATGGCGGACCG
GGGTCGAAGGCAGAATCAGCACACTCAAACGCGGATACGGTTGGGACAGGACCCGAATCGACACCACTGCGGGAGCCCAGACATGGGTCGGACACGGCAT
CCTCGCCCACAACCTGGTCAAGATCAGCACCCTGGCCGCCCAAGCCGAGGCGGCATGACCGCCCTCGGGCCCCGCCCGGGCCGATCCCGCCGAGACACCG
GGCGGGAAAACGTCCCAGAATCTTGGCCGCCGGAATTCGCTCTTCCGCCCCAGCGGGGTTTTTCAGGTCGAAG
ATGGTGTTTCGGACCGAAGGTGAGCAGCCATCGTTGTTCGAGTCGATGCTGCCTGAGCAGGTGCTGACGCTACCCGATGAGCTCGCACGGGTTGACCGGT
TGCTCGATGATCCGGTGTTCTTCGCCCCCTACGAGCGGTTCTTCCACGAGAAGATCGGTCGCCCGTCGACGCCGATCGAGGTGTATTTGCGGTTGATGTT
TCTGAAGTTCCGCTACGGGATGGGCTATGAGTCGCTGTGCCGGGAGGTGTCGGACTCGATTCATTGGCGGCGGTTCTGCCGGATCCCGCTGGAGTCGGCG
GTACCGCATCCGACCACGTTGATGAAGCTGACCACCCGCTGCGGGCCGCAGGCAGTCGCCCAACTGAACGACGCGTTGCTCGAGAAGGCCACCGAGCAGA
AACTGCTGCGCACCAGCATGGTGCGCGCCGACACGACGGTCGTGCCGGCCAACGTGTCCTATCCCACCGATTCAGGTTTGCTGGCCAAGGCGATCCGTCG
AATCACGTCGACCGGCAGGCGGATTCACGCAGCTGGCGGCGCCACCGCCACGACGGTTCGTGACCGCTCCCGCGCCGCGGGCACCCGCGCGCACGCCATC
GCGGCGAAACTACGGTCCCGCAGCGCGCTGGGCCGCGACGAGAAACTGGCCGCCGTGCAGGCCAGCACCGGACAGTTGGCGGATCTGGCCGAGGTTGCCG
TCGACGATGCCCAACGGTTGCTGACCAACGCCACACGATCCTTGCAGCGGGCCCGGGCACGGGCCAAGCAGCAGCGCGAACGCGGCCTGCGTGACCCAGC
CGCCGGACGCCGTCGCGGGCGGCTGGCACGCGCGGTGGCCGACCTGGAGGAGCTACTCGAAGCGACCACGGCCATCGTCGCCCAGACCCGCACCCGGCTG
TCCGGCGACACCCCGGACGGGGCCACGCGACGGGTCAGTCTGCACGACCCCGATGCCCGCCCGATTGCCAAAGGCCGGCTCGGCAAGCCGGTCGAGTTCG
GGCACAAAGCCCAGCTCGCCGAGGGCGATGACGGGGTCGTTGTGGACTACACCCTCGAACGGGGCAACCCTGCTGATGCACCGCAGTTGGCGCCCGCCGT
GGCCCGCGTGACCGCCCGCAGCGGGCGCGCTCCCCGGGTGGTCACCGCCGACCGCGGCTATGGCGAGGCCAAGGTCGACGCCGCCCTGCACGACCTCGGT
GTGCAGCGTGTCGTCATTCCCCGCAAAGGCCAGCCCGGCACTGCCCGCCGCGCCGCCGAACACTCCCGCGCCTTCCGAAAAACCGTGAAATGGCGGACCG
GGGTCGAAGGCAGAATCAGCACACTCAAACGCGGATACGGTTGGGACAGGACCCGAATCGACACCACTGCGGGAGCCCAGACATGGGTCGGACACGGCAT
CCTCGCCCACAACCTGGTCAAGATCAGCACCCTGGCCGCCCAAGCCGAGGCGGCATGACCGCCCTCGGGCCCCGCCCGGGCCGATCCCGCCGAGACACCG
GGCGGGAAAACGTCCCAGAATCTTGGCCGCCGGAATTCGCTCTTCCGCCCCAGCGGGGTTTTTCAGGTCGAAG
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1413 bp | 470 aa | 146 | 1558 | + | No |
Chemistry : DDE
ORF sequence :
MLPEQVLTLPDELARVDRLLDDPVFFAPYERFFHEKIGRPSTPIEVYLRLMFLKFRYGMGYESLCREVSDSIHWRRFCRIPLESAVPHPTTLMKLTTRCG
PQAVAQLNDALLEKATEQKLLRTSMVRADTTVVPANVSYPTDSGLLAKAIRRITSTGRRIHAAGGATATTVRDRSRAAGTRAHAIAAKLRSRSALGRDEK
LAAVQASTGQLADLAEVAVDDAQRLLTNATRSLQRARARAKQQRERGLRDPAAGRRRGRLARAVADLEELLEATTAIVAQTRTRLSGDTPDGATRRVSLH
DPDARPIAKGRLGKPVEFGHKAQLAEGDDGVVVDYTLERGNPADAPQLAPAVARVTARSGRAPRVVTADRGYGEAKVDAALHDLGVQRVVIPRKGQPGTA
RRAAEHSRAFRKTVKWRTGVEGRISTLKRGYGWDRTRIDTTAGAQTWVGHGILAHNLVKISTLAAQAEAA
PQAVAQLNDALLEKATEQKLLRTSMVRADTTVVPANVSYPTDSGLLAKAIRRITSTGRRIHAAGGATATTVRDRSRAAGTRAHAIAAKLRSRSALGRDEK
LAAVQASTGQLADLAEVAVDDAQRLLTNATRSLQRARARAKQQRERGLRDPAAGRRRGRLARAVADLEELLEATTAIVAQTRTRLSGDTPDGATRRVSLH
DPDARPIAKGRLGKPVEFGHKAQLAEGDDGVVVDYTLERGNPADAPQLAPAVARVTARSGRAPRVVTADRGYGEAKVDAALHDLGVQRVVIPRKGQPGTA
RRAAEHSRAFRKTVKWRTGVEGRISTLKRGYGWDRTRIDTTAGAQTWVGHGILAHNLVKISTLAAQAEAA
Blast result :
Comments
ISGrh1 is 84% aa similar to ISRjo3.
References
1] ISfinder annotation (2015)
2] Takarada,H., Isaki,S., Hosoyama,A., Tsuchikane,K., Katsumata,H., Baba,S., Ohji,S., Yamazaki,S. and Fujita,N. (2012) Direct submission GenBank.
2] Takarada,H., Isaki,S., Hosoyama,A., Tsuchikane,K., Katsumata,H., Baba,S., Ohji,S., Yamazaki,S. and Fujita,N. (2012) Direct submission GenBank.