ISTco5
- Family ISNCY
- Group ISDol1
Isoform Synonym(s)
| Accession number | Transposition | Origin | Host |
|---|---|---|---|
| CP003255 | ND | Thermobacillus composti | Thermobacillus composti KWC4 |
DNA section
IS Length : 1616 bp
Ends
IR Length : 17/20
IRL : GTTTCCCCTGAAAAAGTCGGCTGTTTTAAGCAAAATAAAAGGAATTCATC
IRR : GTTGCTCCTGAAAAAGTCCGATCGTGAACATCACCTCATCCCCATCCTTT
Insertion site
| Left flank | Direct repeat | Right flank | DR Length |
|---|---|---|---|
| AATGAATCAC | TAACTA | CAGTCGCGAG | 6 |
DNA sequence
GTTTCCCCTGAAAAAGTCGGCTGTTTTAAGCAAAATAAAAGGAATTCATCTCCTCCATGTGGAAATAGGAAGTTGCCGAGACAACCTATCCCAAGAGGCG
AATTCCTTTGTCTTAATAGTTCAACATCGCCCCTTGGGAATCCTTCCTTGAGGTGAAGAAAATTGTTGAAACTTCGCGACGAACAATTAACCCTGTGGGA
TACGATTCTTCCAGAAGAAATACGGAAACTGCCTGCCGAATTGGCGATCATCGATGAACTGTTGGACGACGAAAGCTTCCTGCAGCCGTTTATGGAAAAG
CATCCAACCAAGACGAAGATGGGCCGTCCCACCTACCCCATCGAGAAATACTTGCGCCTCATGGTGCTCAAACGCAAGTATAACCTGGGATACGAGTCCT
TGATCAAAGAAGTCGGCGACAGCATCACTTGGCGCCTGTTCTGCCGAATCGCGATCGATGAACCGATGCCGGATCCTTCGACGCTCATCTACGCCCGCAA
ACGCTACGGCGACGAAGTCGTCGAACAGTTGAACGAAGCGCTCCTGCACAAGCTGAAGGAAAAGGCGGTGCTGAAGCATCGCAAATTGCGCACCGATACG
ACGGTCGTGGAGTCCGACATTCACCACCCCACAGACGCAACCTTGCTGCAGGACGGCGTCAAAGTCATCACCCACCTGGTGCGGAAGATCCGCCAAGTCG
CTTCCCATGCCGCGCAAGGCTTTGAAGACCGTACCGCCGAGATCAAGGAGAAGATTCTGTCCATCGCTAAGGTACTTCGCCGCCGCAGCCGGGAGTCTTG
GGAAGAAGTCGACCGGATCACCGAAAGCGTCATCGAAGTGACGGAAGCCGTGGTCGAGCAAGCAAACGCGGTTGTCGCAAAAATACGGGAGACCGGCAAA
CGGATGGCGCAACAGAGCAAAGGGCGGCTTCAAACAGCCATCACGCTGACCGGCCAACTGATCCGCCAAGCCAAGCAAGTCGTATCGGGGACGCGGGTCA
TCCCGGATCGCATCGTCAGCTTTTTCGATCCGGAAGCCCGGCCGATCAAGAAAGGCAAGTTAGCCAAAGGAACGGAGTTCGGGTATAAAGTCCGGATTGA
CGAAACGGAGAGCGGCTTCATTACCGGATATGCCGTGTACAATGGCAACCCGGCGGACGATGAACTGCTCATTCCGGCGGTCAAAGCCCACATCGAAACA
TTCGGCGTCGCCCCAACAGCTGTCGCGACGGATCGCGGTTTTTCCAGCAAGAAAAACGAATCGGCAGTGACGGCGCTCGGCGTCAAACGGGCCAGCTTAC
CCCGAAAGGGCAAGAAAGGCCAGGCGAGAACGGAACATGAAAACCAACCTTGGTTCAAAGACTTGCAGCGCTACCGTGCAGCAGGAGAGGCCAGGATCAG
CCTCCTCAAGCGAAAGTACGGTTTAGGCCGCAGCAGGTACCGGGGCCTTGTCGGCTCAAAAAGCTGGGTCGGGTTCGGAATCCTGACCCACAACCTGGAC
AGAGCGGCCAAAATGCTCGCGAAGGCAGCAAAATAAGGAAGAATAAGGTAAATGGGCAGTCCTGAAAAAGGATGGGGATGAGGTGATGTTCACGATCGGA
CTTTTTCAGGAGCAAC
AATTCCTTTGTCTTAATAGTTCAACATCGCCCCTTGGGAATCCTTCCTTGAGGTGAAGAAAATTGTTGAAACTTCGCGACGAACAATTAACCCTGTGGGA
TACGATTCTTCCAGAAGAAATACGGAAACTGCCTGCCGAATTGGCGATCATCGATGAACTGTTGGACGACGAAAGCTTCCTGCAGCCGTTTATGGAAAAG
CATCCAACCAAGACGAAGATGGGCCGTCCCACCTACCCCATCGAGAAATACTTGCGCCTCATGGTGCTCAAACGCAAGTATAACCTGGGATACGAGTCCT
TGATCAAAGAAGTCGGCGACAGCATCACTTGGCGCCTGTTCTGCCGAATCGCGATCGATGAACCGATGCCGGATCCTTCGACGCTCATCTACGCCCGCAA
ACGCTACGGCGACGAAGTCGTCGAACAGTTGAACGAAGCGCTCCTGCACAAGCTGAAGGAAAAGGCGGTGCTGAAGCATCGCAAATTGCGCACCGATACG
ACGGTCGTGGAGTCCGACATTCACCACCCCACAGACGCAACCTTGCTGCAGGACGGCGTCAAAGTCATCACCCACCTGGTGCGGAAGATCCGCCAAGTCG
CTTCCCATGCCGCGCAAGGCTTTGAAGACCGTACCGCCGAGATCAAGGAGAAGATTCTGTCCATCGCTAAGGTACTTCGCCGCCGCAGCCGGGAGTCTTG
GGAAGAAGTCGACCGGATCACCGAAAGCGTCATCGAAGTGACGGAAGCCGTGGTCGAGCAAGCAAACGCGGTTGTCGCAAAAATACGGGAGACCGGCAAA
CGGATGGCGCAACAGAGCAAAGGGCGGCTTCAAACAGCCATCACGCTGACCGGCCAACTGATCCGCCAAGCCAAGCAAGTCGTATCGGGGACGCGGGTCA
TCCCGGATCGCATCGTCAGCTTTTTCGATCCGGAAGCCCGGCCGATCAAGAAAGGCAAGTTAGCCAAAGGAACGGAGTTCGGGTATAAAGTCCGGATTGA
CGAAACGGAGAGCGGCTTCATTACCGGATATGCCGTGTACAATGGCAACCCGGCGGACGATGAACTGCTCATTCCGGCGGTCAAAGCCCACATCGAAACA
TTCGGCGTCGCCCCAACAGCTGTCGCGACGGATCGCGGTTTTTCCAGCAAGAAAAACGAATCGGCAGTGACGGCGCTCGGCGTCAAACGGGCCAGCTTAC
CCCGAAAGGGCAAGAAAGGCCAGGCGAGAACGGAACATGAAAACCAACCTTGGTTCAAAGACTTGCAGCGCTACCGTGCAGCAGGAGAGGCCAGGATCAG
CCTCCTCAAGCGAAAGTACGGTTTAGGCCGCAGCAGGTACCGGGGCCTTGTCGGCTCAAAAAGCTGGGTCGGGTTCGGAATCCTGACCCACAACCTGGAC
AGAGCGGCCAAAATGCTCGCGAAGGCAGCAAAATAAGGAAGAATAAGGTAAATGGGCAGTCCTGAAAAAGGATGGGGATGAGGTGATGTTCACGATCGGA
CTTTTTCAGGAGCAAC
Protein section
ORF number : 1
ORF 1
| Length | Begin | End | Strand | Fusion ORF | |
|---|---|---|---|---|---|
| 1374 bp | 457 aa | 163 | 1536 | + | No |
Chemistry : DDE
ORF sequence :
MLKLRDEQLTLWDTILPEEIRKLPAELAIIDELLDDESFLQPFMEKHPTKTKMGRPTYPIEKYLRLMVLKRKYNLGYESLIKEVGDSITWRLFCRIAIDE
PMPDPSTLIYARKRYGDEVVEQLNEALLHKLKEKAVLKHRKLRTDTTVVESDIHHPTDATLLQDGVKVITHLVRKIRQVASHAAQGFEDRTAEIKEKILS
IAKVLRRRSRESWEEVDRITESVIEVTEAVVEQANAVVAKIRETGKRMAQQSKGRLQTAITLTGQLIRQAKQVVSGTRVIPDRIVSFFDPEARPIKKGKL
AKGTEFGYKVRIDETESGFITGYAVYNGNPADDELLIPAVKAHIETFGVAPTAVATDRGFSSKKNESAVTALGVKRASLPRKGKKGQARTEHENQPWFKD
LQRYRAAGEARISLLKRKYGLGRSRYRGLVGSKSWVGFGILTHNLDRAAKMLAKAAK
PMPDPSTLIYARKRYGDEVVEQLNEALLHKLKEKAVLKHRKLRTDTTVVESDIHHPTDATLLQDGVKVITHLVRKIRQVASHAAQGFEDRTAEIKEKILS
IAKVLRRRSRESWEEVDRITESVIEVTEAVVEQANAVVAKIRETGKRMAQQSKGRLQTAITLTGQLIRQAKQVVSGTRVIPDRIVSFFDPEARPIKKGKL
AKGTEFGYKVRIDETESGFITGYAVYNGNPADDELLIPAVKAHIETFGVAPTAVATDRGFSSKKNESAVTALGVKRASLPRKGKKGQARTEHENQPWFKD
LQRYRAAGEARISLLKRKYGLGRSRYRGLVGSKSWVGFGILTHNLDRAAKMLAKAAK
Blast result :
Comments
ISTco5 is 80% aa similar to ISPeth1.
References
1] ISfinder annotation (2015)
2] Lucas,S., Han,J., Lapidus,A., Cheng,J.-F., Goodwin,L., Pitluck,S., Peters,L., Ovchinnikova,G., Teshima,H., Detter,J.C., Han,C., Tapia,R., Land,M., Hauser,L., Kyrpides,N., Ivanova,N., Pagani,I., Anderson,I. and Woyke,T. (2012) Direct submission GenBank.
2] Lucas,S., Han,J., Lapidus,A., Cheng,J.-F., Goodwin,L., Pitluck,S., Peters,L., Ovchinnikova,G., Teshima,H., Detter,J.C., Han,C., Tapia,R., Land,M., Hauser,L., Kyrpides,N., Ivanova,N., Pagani,I., Anderson,I. and Woyke,T. (2012) Direct submission GenBank.