ISAeme19

  • Family ISL3
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
CP007567 ND Aeromonas media
Aeromonas media WS
DNA section
IS Length : 1304 bp

Ends


IR Length : 19/25

IRL : GGTTCTTCGCGGGATCTTGGGGAAGTGGAAGTTGACAGACAGGGTGCTGG
IRR : GGTTCATCGCGGCTTTCCGGGGAAGGCCGCCTTGATTTTCAGAAAAAAGT

Insertion site


Left flankDirect repeatRight flankDR Length
AGCCCTATTGACAGTTTATGGATAGAGT8
TTGCCGGCCATAAAAAAAGACAGCCTTG8

DNA sequence

GGTTCTTCGCGGGATCTTGGGGAAGTGGAAGTTGACAGACAGGGTGCTGGTAAACTGGCTGTCTCCAAACACACCACCACCATCACCCTGCTGTCGCCGT
GCATCATATTGATATTGCCTCCTTCTGGCCAGGTTATACCGTCATCGCCCAAGCGCTTTCTGCCAACCATCACACCCTGTTTACCCTTGAGCCTCGCGCC
GACCTGTTGCCCCGTTGTCGCCGATGCCTGCAACCCACGCCATTGATCCACGACCAACGTATCCGCCGGGTGCGTGAGCGAGACCTATTTGACCGACAAG
TCTGGTTACAACTGCCTGTTCGCCGCGTCGACTGTCTGCGCTGTGGTCGCGTCAGTGAACATATCGACTGGCTCCCCTCTGGCTCCCGCCTCACCCGGCG
CATGCAGTGCTGGATTGAAGCGCTCGTTCAGTACCTCCCCATCCGCCATGTCAGCCAGCTCACCGGGGTCGGTTGGCACACCATCAAGGAGATCGACAAG
CGCCGTTTGCAGACCAGTGTGGGCACCATCGAACTTGGGGAGGTGCGGCGGCTGGTGATGGATGAGTTTGCCCTGCACAAGGGACACCGCTATGCCACCG
TGATCATGGATGCCGAGCGAACCCGCGTCCTGTGGGTGGGGCACGGCAACAGCCGGGCCGCTATCCGTCCCTTCTTCGAGCAGCTCGGCGAGCGATGCCA
GCAGATTGAAGCGGTGGCGATGGACATGAACACGGCGTTCGACCTGGAGGTGAAGCAACACTGCCCGCAGGCGGAGGTGGTCTACGACCTGTTCCACGTG
GTGGCTCGCTATGGCCGAGAGGTGGTGGACCGGGTGCGAGTGGAGCAGGCGAATGCACTGAAAAGCGATAAACCGGCGCGAAAAGTGGTCAAAAGTGCGC
GTTGGTTGCTGCTACGTAATCGGGCGAAGTTGAGTGAAAAACAGGATGTGAAGTTGCAGGAGCTGTTGGCGGCGAATCAACCGCTGGCGATGGTGTACGT
GCTGAAAGAGGGGTTGAAGGGCATCTGGTATGCGCCGAGCGTGTGGGAAGGATGGCGACGATGGCGGAGCTGGATGCGGCAGGTGAAGGAAAGCGGGCTA
GCGCCGCTGCAACGATTTGGTCGAAATTTATCGAAATATATGCGGGGGATCCTGGCGAGTGCAAACTACCCGATGCACACGAGTGTGCTGGAAGGGGTGA
ACAACAAGATCAAAGTGATAAAGCGCATGGCATATGGATTTAGGGACTCAGAATACTTTTTTCTGAAAATCAAGGCGGCCTTCCCCGGAAAGCCGCGATG
AACC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1203 bp400 aa991301+No
ORF function : Transposase
Chemistry : Unknow

ORF sequence :

MHHIDIASFWPGYTVIAQALSANHHTLFTLEPRADLLPRCRRCLQPTPLIHDQRIRRVRERDLFDRQVWLQLPVRRVDCLRCGRVSEHIDWLPSGSRLTR
RMQCWIEALVQYLPIRHVSQLTGVGWHTIKEIDKRRLQTSVGTIELGEVRRLVMDEFALHKGHRYATVIMDAERTRVLWVGHGNSRAAIRPFFEQLGERC
QQIEAVAMDMNTAFDLEVKQHCPQAEVVYDLFHVVARYGREVVDRVRVEQANALKSDKPARKVVKSARWLLLRNRAKLSEKQDVKLQELLAANQPLAMVY
VLKEGLKGIWYAPSVWEGWRRWRSWMRQVKESGLAPLQRFGRNLSKYMRGILASANYPMHTSVLEGVNNKIKVIKRMAYGFRDSEYFFLKIKAAFPGKPR

 

Blast result :
Comments
ISAeme19 is 68% aa similar to ISGme5.
References
1] Pfeiffer F. (2015) Direct submission
2] Chai B., Wang H. and Chen X. (2012) J. Bacteriol. 194 (23), 6693-6694