ISHko4
- Family IS200/IS605
- Group IS1341
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
EMA70404 | ND | Halorubrum kocurii | Halorubrum kocurii JCM 14978 |
DNA section
IS Length : 1517 bp
Ends
Left end : CTGAATTGAGGCGCTAAGGCCCCTTCCTCAACGAACGAGCGAAGCGAGTGAGTAGGGAGGGGATACAGCGCCGCACGGTTCTCAAACACGTTCGACGCTC II struct. : Yes
Right end : CTGTGTCCTCGGTTGTGGATGCAAAGCGCGTCGTGGAAACAGGAAGCCCCACCCTCAAGCGCGAGGGCGTCAGCCCGAGCGGTAGGGTGGGGTAGTTCAC II struct. : Yes
Insertion site
Left flank | LE cleavage site | Right flank | RE cleavage site |
---|---|---|---|
AACAACATTAAT | TTAC | CTGCGACATTTG | tcac |
DNA sequence
CTGAATTGAGGCGCTAAGGCCCCTTCCTCAACGAACGAGCGAAGCGAGTGAGTAGGGAGGGGATACAGCGCCGCACGGTTCTCAAACACGTTCGACGCTC
GGCCCACAGGCCCACGCAATCGAAACAACTATGCGCACAGATACGCATAGTGCGTATGTAGTGAGGCGGAAGAACATCACCATCCGCGAAGACCAAGCCG
AGTGGGTCGAGGAGAACCACCTTAACCTCTCGTCGTTCGTTCGCGGACAACTTGACGAACTCATCGAAGAACGCTCGTGAACTACAACTACAGGTATCGA
CTCCGACCGTCCGACGCTCTCGAAGACCAGTTAGTGTGGACTGTCGATACCTGTAGACAGGTCTACAACCACTTTCTCCACCGACTCAACCGCACCGACG
ACACCTCGGCATACTCCGAGCAGAAGCTCCTGCCGAGTCTCAAGAAGTGGTGGAGCGGCCTGAAAGACGTTCACTCGAAGGTACTACAGAAGGTCGTGCA
ACGGCTGTACGACAACCTCTCGACACTACGAGAGCGCAAAGAGAACGGCTACCGCGTCGGGACGCTCAAGTGGAAGGCACCGGACGAGTACCGCAGTTTC
ACCTACAGTCAATCCGGCTTCAAGCTCAAGAACACGGGCGGTCGGACGCGACTGTGGCTCTCAAAACTCGGAGAAATCCCGCTCACCTTCCACCGCGACC
TCCCCGACGACGCCGACATTAAGACCGTCACGGTCAAGCAAGAACCTACCGGGAAGTGGTACGCCATTCTCGGGATCGAGACGCCCGACGACCCGCCAGA
GAAGCCGGAGAATCCCGAGAACTGCGTCGGTATCGACGTGGGGATTCTCAAGTACGCCCACGACACCGACGGAACCGCCGTCGAATCCCTCGACCTGTCC
GACGAACGCGAACGTTTGGAACGCGCACAGCGCGACCTCTCGCGGAAACAGCACGGGTCGGACAATTGGGAGAAACAGCGTCAGGTCGTGGCAGAACGCC
ACGCCGAGTTGAAGAACAAGCGCCGCGACTTCCTTCACAAGCTCTCGAACTACTACGCTCGGGAGTACGAGTTCGTGGCCGTCGAGGACTTGGACGCAAA
GGGGTTGGTCGAACTACCGGGCAACTCGCGGAACCGGGCAGGTGCGGCGTGGGGGACGTTCCTGCGGATGCTCAAATACAAGTGCGAACGCGAAGGAACG
CACTTCGTTGCTGTGAATCCGCGCGGAACGACGAAAGAGTGTGCATCCTGCGGCGTTTCGACCGAGAAACCGTTGTGGGTGCGCGAACACTCCTGCCCGG
CGTGTGGGTTCGAGGCGGACAGAGATGCGAACGCGGCGTGGAATATTCTTTCTCGCGGTGTGAAGAAGCGGTTAGGAGCGGGACACTCCGAATCAACGCC
TGTGGAGACTGCGCTCCCTGTGTCCTCGGTTGTGGATGCAAAGCGCGTCGTGGAAACAGGAAGCCCCACCCTCAAGCGCGAGGGCGTCAGCCCGAGCGGT
AGGGTGGGGTAGTTCAC
GGCCCACAGGCCCACGCAATCGAAACAACTATGCGCACAGATACGCATAGTGCGTATGTAGTGAGGCGGAAGAACATCACCATCCGCGAAGACCAAGCCG
AGTGGGTCGAGGAGAACCACCTTAACCTCTCGTCGTTCGTTCGCGGACAACTTGACGAACTCATCGAAGAACGCTCGTGAACTACAACTACAGGTATCGA
CTCCGACCGTCCGACGCTCTCGAAGACCAGTTAGTGTGGACTGTCGATACCTGTAGACAGGTCTACAACCACTTTCTCCACCGACTCAACCGCACCGACG
ACACCTCGGCATACTCCGAGCAGAAGCTCCTGCCGAGTCTCAAGAAGTGGTGGAGCGGCCTGAAAGACGTTCACTCGAAGGTACTACAGAAGGTCGTGCA
ACGGCTGTACGACAACCTCTCGACACTACGAGAGCGCAAAGAGAACGGCTACCGCGTCGGGACGCTCAAGTGGAAGGCACCGGACGAGTACCGCAGTTTC
ACCTACAGTCAATCCGGCTTCAAGCTCAAGAACACGGGCGGTCGGACGCGACTGTGGCTCTCAAAACTCGGAGAAATCCCGCTCACCTTCCACCGCGACC
TCCCCGACGACGCCGACATTAAGACCGTCACGGTCAAGCAAGAACCTACCGGGAAGTGGTACGCCATTCTCGGGATCGAGACGCCCGACGACCCGCCAGA
GAAGCCGGAGAATCCCGAGAACTGCGTCGGTATCGACGTGGGGATTCTCAAGTACGCCCACGACACCGACGGAACCGCCGTCGAATCCCTCGACCTGTCC
GACGAACGCGAACGTTTGGAACGCGCACAGCGCGACCTCTCGCGGAAACAGCACGGGTCGGACAATTGGGAGAAACAGCGTCAGGTCGTGGCAGAACGCC
ACGCCGAGTTGAAGAACAAGCGCCGCGACTTCCTTCACAAGCTCTCGAACTACTACGCTCGGGAGTACGAGTTCGTGGCCGTCGAGGACTTGGACGCAAA
GGGGTTGGTCGAACTACCGGGCAACTCGCGGAACCGGGCAGGTGCGGCGTGGGGGACGTTCCTGCGGATGCTCAAATACAAGTGCGAACGCGAAGGAACG
CACTTCGTTGCTGTGAATCCGCGCGGAACGACGAAAGAGTGTGCATCCTGCGGCGTTTCGACCGAGAAACCGTTGTGGGTGCGCGAACACTCCTGCCCGG
CGTGTGGGTTCGAGGCGGACAGAGATGCGAACGCGGCGTGGAATATTCTTTCTCGCGGTGTGAAGAAGCGGTTAGGAGCGGGACACTCCGAATCAACGCC
TGTGGAGACTGCGCTCCCTGTGTCCTCGGTTGTGGATGCAAAGCGCGTCGTGGAAACAGGAAGCCCCACCCTCAAGCGCGAGGGCGTCAGCCCGAGCGGT
AGGGTGGGGTAGTTCAC
Protein section
ORF number : 2
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
120 bp | 39 aa | 161 | 280 | + | No |
Annotation : Hypothetical proteinDescription :
ORF sequence :
MRRKNITIREDQAEWVEENHLNLSSFVRGQLDELIEERS
Blast result :ORF 2
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1236 bp | 411 aa | 277 | 1512 | + | No |
AG : TnpB
ORF sequence :
MNYNYRYRLRPSDALEDQLVWTVDTCRQVYNHFLHRLNRTDDTSAYSEQKLLPSLKKWWSGLKDVHSKVLQKVVQRLYDNLSTLRERKENGYRVGTLKWK
APDEYRSFTYSQSGFKLKNTGGRTRLWLSKLGEIPLTFHRDLPDDADIKTVTVKQEPTGKWYAILGIETPDDPPEKPENPENCVGIDVGILKYAHDTDGT
AVESLDLSDERERLERAQRDLSRKQHGSDNWEKQRQVVAERHAELKNKRRDFLHKLSNYYAREYEFVAVEDLDAKGLVELPGNSRNRAGAAWGTFLRMLK
YKCEREGTHFVAVNPRGTTKECASCGVSTEKPLWVREHSCPACGFEADRDANAAWNILSRGVKKRLGAGHSESTPVETALPVSSVVDAKRVVETGSPTLK
REGVSPSGRVG
APDEYRSFTYSQSGFKLKNTGGRTRLWLSKLGEIPLTFHRDLPDDADIKTVTVKQEPTGKWYAILGIETPDDPPEKPENPENCVGIDVGILKYAHDTDGT
AVESLDLSDERERLERAQRDLSRKQHGSDNWEKQRQVVAERHAELKNKRRDFLHKLSNYYAREYEFVAVEDLDAKGLVELPGNSRNRAGAAWGTFLRMLK
YKCEREGTHFVAVNPRGTTKECASCGVSTEKPLWVREHSCPACGFEADRDANAAWNILSRGVKKRLGAGHSESTPVETALPVSSVVDAKRVVETGSPTLK
REGVSPSGRVG
Blast result :
Comments
ISHko4 is 93% (TnpB) aa similar to ISHla22. The first ORF is a passenger gene annotated as hypothetical protein.
References
1] Friedhelm Pfeiffer (2015) Direct submission.
2] Becker,E.A., Seitzer,P., Tritt,A., Larsen,D., Yao,A., Wu,D., Darling,A., Eisen,J.A. and Facciotti,M.T. (2012) Direct submission GenBank.
2] Becker,E.A., Seitzer,P., Tritt,A., Larsen,D., Yao,A., Wu,D., Darling,A., Eisen,J.A. and Facciotti,M.T. (2012) Direct submission GenBank.