ISHko3
- Family IS200/IS605
- Group IS605
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
AOJH01000009 | ND | Halorubrum kocurii | Halorubrum kocurii JCM 14978 |
DNA section
IS Length : 1862 bp
Ends
Left end : CTGGATATAGGCGCTAAGCCCCCACCCTCAACGGAGCGATCGAAGGGAGCGGAGTAGGGTGGGGATACAGCGCCGTCATCATCTGTTCATACAGCGCCGT II struct. : Yes
Right end : CACCGACTCGGTGTCTGCAAAGCGCGTCGTGGAAGCAGGAAGCCCTACCCTCAAGGAGCGAACGGCGTCAGCCGTGAGCGAGTAGGGTAGGGTAGTTCAC II struct. : Yes
Insertion site
Left flank | LE cleavage site | Right flank | RE cleavage site |
---|---|---|---|
GATCTCGATTCG | TTAG | CGATGGACGGTG | TCAC |
DNA sequence
CTGGATATAGGCGCTAAGCCCCCACCCTCAACGGAGCGATCGAAGGGAGCGGAGTAGGGTGGGGATACAGCGCCGTCATCATCTGTTCATACAGCGCCGT
CATCATCTGTTCATACAGCAATACGGTTGCAGGCCCACAGACCCACGTAGTCACAACGTTTTTTCACTGGGGTACCGTACAATAGTACGAACCCAATGGA
GTACGACCTCGATTCGGGAGCGCATTCGACGTACTCCCTGCACTACCACCTGATACTCACTACGAAGTATCGGCGCGGAGTGCTAACCGAGGAGCGAACC
CAATTCATTCGCGGGGTTATCAGCGGGTTCACGGACAACTACGGCGTCGAACTGACGAACCTCGACGGAGAGGACGACCACGTTCACATCCTGTTCCGAG
CGAAACCCACCACAAACCTCGTGAAGTTCATTAATACAGTCAAGGGCGCGACTGCTCGCCGTATCCGAAACGAGTACGAGGATGAGCTGAAGACCGAACT
GTGGGGCGACTCGTTCTGGAACGACTCGTACTGCCTCATCTCGACGGGGCAGGTGTCGCTGGATGTGCTGAAACAGTACGTCGAAGACCAGCGGGAGAGC
TGATGTACTACGCCTACAAGTACCGTCTCAAGCCGTCCGACGCCCACCGAAAGGAGTTGGACCGCCACCGCGATATTTGTAGGCAATTGTACAACCACAC
GCTCTATCGGCTCAACGAGTACCAAGACGAACACGGCGAACTACCTTCCATGACCACGCTTCGGTCGGAACTCCCCGACCTCAAGAACTGGTGGGACGGC
CTCTCCGACGTGTACTCGAAGGTTCTCCAAACCGTCGTGGAACGGCTGTTCGACAACCTCAAAAGCCTCTCCAAACTCAAAGAGAACGGCTACGGCGTCG
GTCAACTCAAGTGGAAGCCGCCACGGGAGTTCCGCAGTTTCACGTACAACCAGTCTGGCTTCAAGCTCGACAAAAAGGGCGGTCAGACTGTGCTGTCACT
CTCGAAACTCGGAGACATACCGATTCGGCTCCACCGCGCCATCCCCGACGACGCGAAGCTCAAACAGGTCACGATCAAGAAGGAACCGACGGGCGAGTGG
TTCGCCACGTTCGGCGTCCAAATGGACCGTGAACCGCCCGAACCGCCTGAGAATCCCGAGCGGTGCGTCGGCATTGACGTGGGGATTCTCAAGTACGCCC
ACGACACCGACGGGACCGCCGTCGGGTCGCCCGACCTCTCCGCCGAACGGGAGCGTCTGGAACGCGAACAGCGGTCCCTCTCACGGAAGGAATACGGGTC
GAACAACTACGAGAAGCAACGACGGCGGGTCGCGGAGTGTCACGCCGATCTCCGACGAAAGCGCCGCGACTTCCTGCACAAGCTCTCGAACTACTACGCT
CGGGAGTACGACCTCGTGGCGGTCGAAGACCTGAACGTGAAAGGGATACTCGAATCACCGTCGAACAGCCGCAACACGGCGGCGGCGGCGTGGCGAACGT
TCCTCACATTACTCGAATACAAGTGCGAGCGTGAAGGAACGCACTTCGTCGCCGTGAATCCGAGAGGGACGACCAAGGAGTGCGCGTCGTGCGGCGTTTC
GACCGACAAACCGTTGTGGGTCCGTGAACACACCTGTCCCGCCTGCGGGTTTAAGTCGGACAGGGACGCAAACGCGGCGTGGAACATCCTTTCTCGCGGC
CTCGAAGATGTAGGAGTGGGACACTCCGAATCAACGTCTGTGGAGACTGCGCTCCCTGTGGACACCGACTCGGTGTCTGCAAAGCGCGTCGTGGAAGCAG
GAAGCCCTACCCTCAAGGAGCGAACGGCGTCAGCCGTGAGCGAGTAGGGTAGGGTAGTTCAC
CATCATCTGTTCATACAGCAATACGGTTGCAGGCCCACAGACCCACGTAGTCACAACGTTTTTTCACTGGGGTACCGTACAATAGTACGAACCCAATGGA
GTACGACCTCGATTCGGGAGCGCATTCGACGTACTCCCTGCACTACCACCTGATACTCACTACGAAGTATCGGCGCGGAGTGCTAACCGAGGAGCGAACC
CAATTCATTCGCGGGGTTATCAGCGGGTTCACGGACAACTACGGCGTCGAACTGACGAACCTCGACGGAGAGGACGACCACGTTCACATCCTGTTCCGAG
CGAAACCCACCACAAACCTCGTGAAGTTCATTAATACAGTCAAGGGCGCGACTGCTCGCCGTATCCGAAACGAGTACGAGGATGAGCTGAAGACCGAACT
GTGGGGCGACTCGTTCTGGAACGACTCGTACTGCCTCATCTCGACGGGGCAGGTGTCGCTGGATGTGCTGAAACAGTACGTCGAAGACCAGCGGGAGAGC
TGATGTACTACGCCTACAAGTACCGTCTCAAGCCGTCCGACGCCCACCGAAAGGAGTTGGACCGCCACCGCGATATTTGTAGGCAATTGTACAACCACAC
GCTCTATCGGCTCAACGAGTACCAAGACGAACACGGCGAACTACCTTCCATGACCACGCTTCGGTCGGAACTCCCCGACCTCAAGAACTGGTGGGACGGC
CTCTCCGACGTGTACTCGAAGGTTCTCCAAACCGTCGTGGAACGGCTGTTCGACAACCTCAAAAGCCTCTCCAAACTCAAAGAGAACGGCTACGGCGTCG
GTCAACTCAAGTGGAAGCCGCCACGGGAGTTCCGCAGTTTCACGTACAACCAGTCTGGCTTCAAGCTCGACAAAAAGGGCGGTCAGACTGTGCTGTCACT
CTCGAAACTCGGAGACATACCGATTCGGCTCCACCGCGCCATCCCCGACGACGCGAAGCTCAAACAGGTCACGATCAAGAAGGAACCGACGGGCGAGTGG
TTCGCCACGTTCGGCGTCCAAATGGACCGTGAACCGCCCGAACCGCCTGAGAATCCCGAGCGGTGCGTCGGCATTGACGTGGGGATTCTCAAGTACGCCC
ACGACACCGACGGGACCGCCGTCGGGTCGCCCGACCTCTCCGCCGAACGGGAGCGTCTGGAACGCGAACAGCGGTCCCTCTCACGGAAGGAATACGGGTC
GAACAACTACGAGAAGCAACGACGGCGGGTCGCGGAGTGTCACGCCGATCTCCGACGAAAGCGCCGCGACTTCCTGCACAAGCTCTCGAACTACTACGCT
CGGGAGTACGACCTCGTGGCGGTCGAAGACCTGAACGTGAAAGGGATACTCGAATCACCGTCGAACAGCCGCAACACGGCGGCGGCGGCGTGGCGAACGT
TCCTCACATTACTCGAATACAAGTGCGAGCGTGAAGGAACGCACTTCGTCGCCGTGAATCCGAGAGGGACGACCAAGGAGTGCGCGTCGTGCGGCGTTTC
GACCGACAAACCGTTGTGGGTCCGTGAACACACCTGTCCCGCCTGCGGGTTTAAGTCGGACAGGGACGCAAACGCGGCGTGGAACATCCTTTCTCGCGGC
CTCGAAGATGTAGGAGTGGGACACTCCGAATCAACGTCTGTGGAGACTGCGCTCCCTGTGGACACCGACTCGGTGTCTGCAAAGCGCGTCGTGGAAGCAG
GAAGCCCTACCCTCAAGGAGCGAACGGCGTCAGCCGTGAGCGAGTAGGGTAGGGTAGTTCAC
Protein section
ORF number : 2
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
408 bp | 135 aa | 196 | 603 | + | No |
Chemistry : Y1
ORF sequence :
MEYDLDSGAHSTYSLHYHLILTTKYRRGVLTEERTQFIRGVISGFTDNYGVELTNLDGEDDHVHILFRAKPTTNLVKFINTVKGATARRIRNEYEDELKT
ELWGDSFWNDSYCLISTGQVSLDVLKQYVEDQRES
ELWGDSFWNDSYCLISTGQVSLDVLKQYVEDQRES
Blast result :ORF 2
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1245 bp | 414 aa | 603 | 1847 | + | No |
AG : TnpB
ORF sequence :
MYYAYKYRLKPSDAHRKELDRHRDICRQLYNHTLYRLNEYQDEHGELPSMTTLRSELPDLKNWWDGLSDVYSKVLQTVVERLFDNLKSLSKLKENGYGVG
QLKWKPPREFRSFTYNQSGFKLDKKGGQTVLSLSKLGDIPIRLHRAIPDDAKLKQVTIKKEPTGEWFATFGVQMDREPPEPPENPERCVGIDVGILKYAH
DTDGTAVGSPDLSAERERLEREQRSLSRKEYGSNNYEKQRRRVAECHADLRRKRRDFLHKLSNYYAREYDLVAVEDLNVKGILESPSNSRNTAAAAWRTF
LTLLEYKCEREGTHFVAVNPRGTTKECASCGVSTDKPLWVREHTCPACGFKSDRDANAAWNILSRGLEDVGVGHSESTSVETALPVDTDSVSAKRVVEAG
SPTLKERTASAVSE
QLKWKPPREFRSFTYNQSGFKLDKKGGQTVLSLSKLGDIPIRLHRAIPDDAKLKQVTIKKEPTGEWFATFGVQMDREPPEPPENPERCVGIDVGILKYAH
DTDGTAVGSPDLSAERERLEREQRSLSRKEYGSNNYEKQRRRVAECHADLRRKRRDFLHKLSNYYAREYDLVAVEDLNVKGILESPSNSRNTAAAAWRTF
LTLLEYKCEREGTHFVAVNPRGTTKECASCGVSTDKPLWVREHTCPACGFKSDRDANAAWNILSRGLEDVGVGHSESTSVETALPVDTDSVSAKRVVEAG
SPTLKERTASAVSE
Blast result :
Comments
ISHko3 is 97% (TnpA : the transposase) aa similar to ISHmu6 and 96% (TnpB) aa similar to ISHma12.
References
1] Friedhelm Pfeiffer (2015) Direct submission.
2] Becker,E.A., Seitzer,P., Tritt,A., Larsen,D., Yao,A., Wu,D., Darling,A., Eisen,J.A. and Facciotti,M.T. (2012) Direct submission GenBank.
2] Becker,E.A., Seitzer,P., Tritt,A., Larsen,D., Yao,A., Wu,D., Darling,A., Eisen,J.A. and Facciotti,M.T. (2012) Direct submission GenBank.