ISMpo4
- Family IS110
- Group IS1111
Isoform Synonym(s)
| Accession number | Transposition | Origin | Host |
|---|---|---|---|
| NC_010725 | ND | Methylobacterium populi | Methylobacterium populi BJ001 |
DNA section
IS Length : 1767 bp
Ends
IR Length : 15/17
IRL : gatcggGTAATCGGGCCGTTGCCAGCCTTCCCCGCGTCGCGGATCGTGGC
IRR : --ttctGTAATCGGGCCTCTGCCGTCAAGACGGTCTTGTCACTGCGTTTG
Insertion site
| Left flank | Direct repeat | Right flank | DR Length |
|---|---|---|---|
| CTATCGCGCA | GCCATCGTTG | 0 | |
| CGATGGCACA | GCCATCGTTG | 0 |
DNA sequence
GATCGGGTAATCGGGCCGTTGCCAGCCTTCCCCGCGTCGCGGATCGTGGCAAGCTGCTCGGTGGTTCAATCCGGTCTGCCGGCGCGACGCCCGCGACCGA
TCATCCGGGAGCAGAGTCATGCGCTACTACGCCGGTCTGGATGTCTCGTTGGCGGAGACGTCGGTGTGCGTCGTCGATGAGGAGGGCAAGATCCTCCGCG
AGGCCAAGGTCGCCAGCGAACCGGAAGCGCTGGCGACCTGGCTTGGCGCTCTCGGCCTACCGCTGACCCGTGTCGGCCTGGAGACCGGGGCGCTGGCAGG
CTGGCTATGCGAGGAGATGACCGAACTCGGCGTGCCCAACGTCGTCTGCATGGACGCGCGGCACGCCCGCGCCGCGATGGTCGCGATGACTCACAAGACC
GACCGCAACGACGCGCGCGGCCTCGCCCAGATGCTGCGCACCGGCTGGTTCCGGCAGGTCCACGTGAAGGCACGCCGGACGATGGAGTTGCGGACCCTGC
TCACCAGCCGGAAGACGCTGGTGCTGAAGATCGGCGACGTCGAGAACCAAATCCGCGGCTCGCTCTGCCTGTTCGGGATCAAGCTCGGCACCGCCAAGCG
CCGGACCTTTTCGGAGCGAGTGCGTGAGCTGACAGCAGACCTGCCGCGCGTCGCCGCCATCCTCGACGTGCTGTTGCAGGCGCATTCGGCGATGCTGCTG
TCGCTCGACCGGCTCAATCGCATGGTACTGGAGATCGCCCGCGAGCACGCGGTCTGCCGGAGGCTGATGACGGTGCCCGGCGTCGGGGCCGTGGTCGGCC
TGACGTTCATCGCTGCCATCGAGGACCCAGCCCGCTTCGCCAAGTCGCGTTCGGTCGGGGCGATCCTCGGTCTGGTGCCGCGCAAGCATCAGTCCGGGGA
GGTGGACCGGAACGGGCGGATCACCAAGACGGGAGACACCGAGGCACGGGCGGCGCTGTTCGAAGCGGCGCACGTGATGCTGCACCGGGTCAAGAAGTGG
TCCGGGCTGAAGGCGTGGGCCACGAAGGTGGCACAGCGCCAGGGCAACAAGCGCGCGACGGTGGCGCTGGCCCGCAAGATGGCGGTGGTGATGCACCGGA
TGTGGGTGGACGGCACGACCTTCCGCTTCAGCGCGGTTGAGGCTCCGGCCGCCGCCACCGCGTAGGCATCTTACGGTTCATAAAGATCGGGGCTGGGCGC
GCCTGGCCTCGAAGGGTCGTCCTCACGGGGACGGGCGGGAGGTGAAGCCGGAATGACGGGTGTGCTGGCCCCTGGGCCAAGTCCGCTGTCGCATATAGGC
TCGTCTCTCATCGGAACGCGATCATGTGGCGGTCCACGTGCCGACCACGGACAGAAGCCAAGAGCCCCGTGGGTACGAGATCAAAATGTGCGATGGCCTG
ACCGTCGAGCGCGCCTTCGCGACCGGGGAATGCATAGGCTCGACTTTTGCGGACCTTTCTACCTGCATTCACGCATTCGCTGATCTTTTTCTTGGATATA
CTCAACGGCAGACTCGTCATTACATCTGCTTATATGATCATTGACCGACATCAATAAATAAAAATACGTTTTATAAAAAACTAATATTCCAACAAAAAAC
GAGAGCTAATACAAAAGCGTACTTCTTCCACCGCAATGAACTGCGAGCAATCAACATGATGCGCCTTCTGGATCTGATCGGCATCGGCAAAATTTTTTGG
GATCGCACGGATCTTACAGCAAACGCAGTGACAAGACCGTCTTGACGGCAGAGGCCCGATTACAGAA
TCATCCGGGAGCAGAGTCATGCGCTACTACGCCGGTCTGGATGTCTCGTTGGCGGAGACGTCGGTGTGCGTCGTCGATGAGGAGGGCAAGATCCTCCGCG
AGGCCAAGGTCGCCAGCGAACCGGAAGCGCTGGCGACCTGGCTTGGCGCTCTCGGCCTACCGCTGACCCGTGTCGGCCTGGAGACCGGGGCGCTGGCAGG
CTGGCTATGCGAGGAGATGACCGAACTCGGCGTGCCCAACGTCGTCTGCATGGACGCGCGGCACGCCCGCGCCGCGATGGTCGCGATGACTCACAAGACC
GACCGCAACGACGCGCGCGGCCTCGCCCAGATGCTGCGCACCGGCTGGTTCCGGCAGGTCCACGTGAAGGCACGCCGGACGATGGAGTTGCGGACCCTGC
TCACCAGCCGGAAGACGCTGGTGCTGAAGATCGGCGACGTCGAGAACCAAATCCGCGGCTCGCTCTGCCTGTTCGGGATCAAGCTCGGCACCGCCAAGCG
CCGGACCTTTTCGGAGCGAGTGCGTGAGCTGACAGCAGACCTGCCGCGCGTCGCCGCCATCCTCGACGTGCTGTTGCAGGCGCATTCGGCGATGCTGCTG
TCGCTCGACCGGCTCAATCGCATGGTACTGGAGATCGCCCGCGAGCACGCGGTCTGCCGGAGGCTGATGACGGTGCCCGGCGTCGGGGCCGTGGTCGGCC
TGACGTTCATCGCTGCCATCGAGGACCCAGCCCGCTTCGCCAAGTCGCGTTCGGTCGGGGCGATCCTCGGTCTGGTGCCGCGCAAGCATCAGTCCGGGGA
GGTGGACCGGAACGGGCGGATCACCAAGACGGGAGACACCGAGGCACGGGCGGCGCTGTTCGAAGCGGCGCACGTGATGCTGCACCGGGTCAAGAAGTGG
TCCGGGCTGAAGGCGTGGGCCACGAAGGTGGCACAGCGCCAGGGCAACAAGCGCGCGACGGTGGCGCTGGCCCGCAAGATGGCGGTGGTGATGCACCGGA
TGTGGGTGGACGGCACGACCTTCCGCTTCAGCGCGGTTGAGGCTCCGGCCGCCGCCACCGCGTAGGCATCTTACGGTTCATAAAGATCGGGGCTGGGCGC
GCCTGGCCTCGAAGGGTCGTCCTCACGGGGACGGGCGGGAGGTGAAGCCGGAATGACGGGTGTGCTGGCCCCTGGGCCAAGTCCGCTGTCGCATATAGGC
TCGTCTCTCATCGGAACGCGATCATGTGGCGGTCCACGTGCCGACCACGGACAGAAGCCAAGAGCCCCGTGGGTACGAGATCAAAATGTGCGATGGCCTG
ACCGTCGAGCGCGCCTTCGCGACCGGGGAATGCATAGGCTCGACTTTTGCGGACCTTTCTACCTGCATTCACGCATTCGCTGATCTTTTTCTTGGATATA
CTCAACGGCAGACTCGTCATTACATCTGCTTATATGATCATTGACCGACATCAATAAATAAAAATACGTTTTATAAAAAACTAATATTCCAACAAAAAAC
GAGAGCTAATACAAAAGCGTACTTCTTCCACCGCAATGAACTGCGAGCAATCAACATGATGCGCCTTCTGGATCTGATCGGCATCGGCAAAATTTTTTGG
GATCGCACGGATCTTACAGCAAACGCAGTGACAAGACCGTCTTGACGGCAGAGGCCCGATTACAGAA
Protein section
ORF number : 1
ORF 1
| Length | Begin | End | Strand | Fusion ORF | |
|---|---|---|---|---|---|
| 1047 bp | 348 aa | 119 | 1165 | + | No |
Chemistry : DEDD
ORF sequence :
MRYYAGLDVSLAETSVCVVDEEGKILREAKVASEPEALATWLGALGLPLTRVGLETGALAGWLCEEMTELGVPNVVCMDARHARAAMVAMTHKTDRNDAR
GLAQMLRTGWFRQVHVKARRTMELRTLLTSRKTLVLKIGDVENQIRGSLCLFGIKLGTAKRRTFSERVRELTADLPRVAAILDVLLQAHSAMLLSLDRLN
RMVLEIAREHAVCRRLMTVPGVGAVVGLTFIAAIEDPARFAKSRSVGAILGLVPRKHQSGEVDRNGRITKTGDTEARAALFEAAHVMLHRVKKWSGLKAW
ATKVAQRQGNKRATVALARKMAVVMHRMWVDGTTFRFSAVEAPAAATA
GLAQMLRTGWFRQVHVKARRTMELRTLLTSRKTLVLKIGDVENQIRGSLCLFGIKLGTAKRRTFSERVRELTADLPRVAAILDVLLQAHSAMLLSLDRLN
RMVLEIAREHAVCRRLMTVPGVGAVVGLTFIAAIEDPARFAKSRSVGAILGLVPRKHQSGEVDRNGRITKTGDTEARAALFEAAHVMLHRVKKWSGLKAW
ATKVAQRQGNKRATVALARKMAVVMHRMWVDGTTFRFSAVEAPAAATA
Blast result :
Comments
ISMpo4 is 69% aa similar to ISAzs32. There is an empty site in Methylobacterium extorquens DM4 (FP103042).
References
1] Ming-Chun Lee and David Robinson, direct submission.
2] Copeland,A., Lucas,S., Lapidus,A., Glavina del Rio,T., Dalin,E., Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Chertkov,O., Brettin,T., Detter,J.C., Han,C., Kuske,C.R., Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Mikhailova,N., Marx,C. and Richardson,P. (2008) Direct submission GenBank.
2] Copeland,A., Lucas,S., Lapidus,A., Glavina del Rio,T., Dalin,E., Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Chertkov,O., Brettin,T., Detter,J.C., Han,C., Kuske,C.R., Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Mikhailova,N., Marx,C. and Richardson,P. (2008) Direct submission GenBank.