ISRel10
- Family ISNCY
- Group IS1202
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_004041 | ND | Rhizobium etli | Rhizobium etli CIAT 652 plasmid pB Rhizobium etli CFN 42 plasmid p42d |
DNA section
IS Length : 2528 bp
Ends
IR Length : 36/51
IRL : TGTAGAGGCTATTTAGTAATGCGACAGTTGGGCCAGTTAGAGATGCGACA
IRR : TGTCAAAGCCGAATAGGGCTGCGACGCTGTCGGCCAGTTAGAAACGCGAC
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
TATGCTATTT | GGTGT | TGTAGCCGCA | 5 |
DNA sequence
TGTAGAGGCTATTTAGTAATGCGACAGTTGGGCCAGTTAGAGATGCGACAATCTCGCCTCTCGACGACTGGTCAATGCCAATGTCGGGAGCAAGGATGAC
GACCTTCAGCCTGGTCGAGACCATGAGCGGTCGGAGTCGTCATGTCCTTTATGATCACTATGTCGCAGAAAGAATTGCATCGGCTCGAACTCATCCAGAA
GATCCGTGACGAACGCCTGAGCGTTGTGCAGGCCGCCGAACGGCTCGACCTCAGTCGAAGTCAGGTCCATCGGCTGCTGCAGGCCTATGACCGGGATGGT
CCGGCCGGGCTTGTTTCCAAGAAGCGATCGCGACCGAGCAACCGGCGCCATAGCGAGGAGTTTCGCAATGCGGCGCTGAATCTGATCCGTGAACGCTATC
TGGATTTCGGTCCGACGCTGGCGCGTGAGAAGCTGATCGAGCTGCACCGGATCTCGGTCGCCAAGGAGACCCTGCGGCAATGGATGACCGAGGCCGGCAT
CTGGGTCTCGCGTCGGGAACGCAAGAAGCGGGTTTTCCAGCCACGCGGCCGACGTGATTGCTTTGGCGAACTGGTACAGATCGATGGCTCGCATCACTGG
TGGTTCGAGAACCGTGGGCCCAAATGCGGCCTGCTCGTCTATATCGACGACGCCACCGGCAAGCTGCTGCATCTACGGTTTGCCGGCTCGGAGAACACCT
TCGACTATCTGCACGCGACCAAGGCCTATCTGCAGCAATGGGGCAAACCGCTGGCCTTCTACAGTGACAAGCACGGCGTCTTTCGTTCGACCCATGCGTC
GGAGAAGGACCGGACGAGCGGCCTGACACAATTCGGCCGCGCGCTTTATGAGCTGAACATCGACATCATCTGTGCCAATACCCCGCAGGCCAAAGGCCGC
GTCGAACGTGCGAACCAGACACTGCAGGATCGGCTGGTCAAGGAAATGCGGCTGCGCGGCATCGACACGATCGAGGAAGCCAACGCCTATGCGCCTGAGT
TCATTGCGGATTTCAACGCGCGTTTTGGCAAACAGCCGCGTAATCCGAAGGACATGCACCGGCCGTTGGCCGACCACGAGAACCTCGATGGCGCCATGTG
CCGCAAGGAAGTTCGCACGCTGTCGCAGGCTTTGACGCTGCGCTATGACAAGGTGCTGTTCATCCTTGATCCGACAGATCTTTCCAGGTCCCTGGCGGGT
AAGAAGGTCGTCGTTTGCGACTATCCGGACGGGCGCCTCGAGATCATGCACGAGAGCTTTGCCCTGCCCTACCGAACCTTTGACACGTTACGCTCCGTGC
ATCGCGCCGAGGTCGTCGATAACAAGCGGTTGGACGACATGCTGTCTGTTGTCGCCGAGCTGCAGGCTGGGCGGGAGCAGCAGCGCAGCAAGGGCGGACC
ACGGCGAACTGGGCAGACGGACCATATGTTCGGCATTCGCGATGGCAGCACGGGGAACGGCTACCAGAAACGTGGACGCAAGCCGAGAACGGATTACATG
AACGATCCGGCGGTGATCGCACGGCGGGAGAAAGCGTTATTGAGGCAGCCGGCTGCGGAATAAAGGGCGTCAATGCACGCCGATATCGCTTTGCGTATCT
GACTCCAATTGCAGGCAGGCGGACCAAAGCGGCGTCTTGTGGAAGGCTCCGTCTTGAAGAAGCGTGAGCCCTTCTCGTGCCTCATAAAGCAGGCCCAGCC
AGCACAGGCGCCGCAGGACGCCATATTGGAGATCGGATTTGAGCTCCCAGGCTTCCAGGGTCATTTCGGTGGCGGACAGAGGTGCCGTGTCTGGATAGAG
GATCTTCACGACGTCCAAAGGCGTACAGCCTTCTCTCGCCTTGATATTGAGAAGATTGAGGAACATGCGCCACCAGCGTAGGCGCGCTTGCACCTCAGCT
TCCCGCTCGGTGGCATGGACATACGAGTAGAGATAGTCTGTGGCCACGAGATCGAAGAAGGCTTGCGGGTTCACCAGAAACTCCCGGCCGCGTCTGGTTG
GCAGCAGCACATCCTTTTTCCGGCGAAGAAGCTTCAGATGGCGGGTCGTGTCCCGCACGACCCAGAGCGGCGGCATGTCGCTTTCGTTCAGCACTTTGTT
CATGCTGTAAAGGTCTTCAGCTGTGAAGTCGGGCCACAGGAAGTTCACAGCGGCCCAATGTACGAATTTGCGGTTCATAGCACCGGTCGCGGTCAATCCT
ATGCCACCCTCACCGTCAGCATAGGCAACGGACAGAAGCATGCCGCGGAAGAGGTGACAGCGCGGCGACATCGACGTCACCCTGCAGCTTGATTTCCGGA
AGCATCGTGCAGCTTTGATCCCTACCCGCTCAATTCAGATAAAAGCGAGTATCAGCCGGCGACTGAACAATTGCTATTGAGAAAGCTAAAGCCGAAGAGG
TGTTCTTTCACCCGCCCCCGCTCCGCCCTTTCAACCCGGCCCAGCCGGTCGGATCGGGGGCTGATCATCGGTGCCAGTGTCGCGTTTCTAACTGGCCGAC
AGCGTCGCAGCCCTATTCGGCTTTGACA
GACCTTCAGCCTGGTCGAGACCATGAGCGGTCGGAGTCGTCATGTCCTTTATGATCACTATGTCGCAGAAAGAATTGCATCGGCTCGAACTCATCCAGAA
GATCCGTGACGAACGCCTGAGCGTTGTGCAGGCCGCCGAACGGCTCGACCTCAGTCGAAGTCAGGTCCATCGGCTGCTGCAGGCCTATGACCGGGATGGT
CCGGCCGGGCTTGTTTCCAAGAAGCGATCGCGACCGAGCAACCGGCGCCATAGCGAGGAGTTTCGCAATGCGGCGCTGAATCTGATCCGTGAACGCTATC
TGGATTTCGGTCCGACGCTGGCGCGTGAGAAGCTGATCGAGCTGCACCGGATCTCGGTCGCCAAGGAGACCCTGCGGCAATGGATGACCGAGGCCGGCAT
CTGGGTCTCGCGTCGGGAACGCAAGAAGCGGGTTTTCCAGCCACGCGGCCGACGTGATTGCTTTGGCGAACTGGTACAGATCGATGGCTCGCATCACTGG
TGGTTCGAGAACCGTGGGCCCAAATGCGGCCTGCTCGTCTATATCGACGACGCCACCGGCAAGCTGCTGCATCTACGGTTTGCCGGCTCGGAGAACACCT
TCGACTATCTGCACGCGACCAAGGCCTATCTGCAGCAATGGGGCAAACCGCTGGCCTTCTACAGTGACAAGCACGGCGTCTTTCGTTCGACCCATGCGTC
GGAGAAGGACCGGACGAGCGGCCTGACACAATTCGGCCGCGCGCTTTATGAGCTGAACATCGACATCATCTGTGCCAATACCCCGCAGGCCAAAGGCCGC
GTCGAACGTGCGAACCAGACACTGCAGGATCGGCTGGTCAAGGAAATGCGGCTGCGCGGCATCGACACGATCGAGGAAGCCAACGCCTATGCGCCTGAGT
TCATTGCGGATTTCAACGCGCGTTTTGGCAAACAGCCGCGTAATCCGAAGGACATGCACCGGCCGTTGGCCGACCACGAGAACCTCGATGGCGCCATGTG
CCGCAAGGAAGTTCGCACGCTGTCGCAGGCTTTGACGCTGCGCTATGACAAGGTGCTGTTCATCCTTGATCCGACAGATCTTTCCAGGTCCCTGGCGGGT
AAGAAGGTCGTCGTTTGCGACTATCCGGACGGGCGCCTCGAGATCATGCACGAGAGCTTTGCCCTGCCCTACCGAACCTTTGACACGTTACGCTCCGTGC
ATCGCGCCGAGGTCGTCGATAACAAGCGGTTGGACGACATGCTGTCTGTTGTCGCCGAGCTGCAGGCTGGGCGGGAGCAGCAGCGCAGCAAGGGCGGACC
ACGGCGAACTGGGCAGACGGACCATATGTTCGGCATTCGCGATGGCAGCACGGGGAACGGCTACCAGAAACGTGGACGCAAGCCGAGAACGGATTACATG
AACGATCCGGCGGTGATCGCACGGCGGGAGAAAGCGTTATTGAGGCAGCCGGCTGCGGAATAAAGGGCGTCAATGCACGCCGATATCGCTTTGCGTATCT
GACTCCAATTGCAGGCAGGCGGACCAAAGCGGCGTCTTGTGGAAGGCTCCGTCTTGAAGAAGCGTGAGCCCTTCTCGTGCCTCATAAAGCAGGCCCAGCC
AGCACAGGCGCCGCAGGACGCCATATTGGAGATCGGATTTGAGCTCCCAGGCTTCCAGGGTCATTTCGGTGGCGGACAGAGGTGCCGTGTCTGGATAGAG
GATCTTCACGACGTCCAAAGGCGTACAGCCTTCTCTCGCCTTGATATTGAGAAGATTGAGGAACATGCGCCACCAGCGTAGGCGCGCTTGCACCTCAGCT
TCCCGCTCGGTGGCATGGACATACGAGTAGAGATAGTCTGTGGCCACGAGATCGAAGAAGGCTTGCGGGTTCACCAGAAACTCCCGGCCGCGTCTGGTTG
GCAGCAGCACATCCTTTTTCCGGCGAAGAAGCTTCAGATGGCGGGTCGTGTCCCGCACGACCCAGAGCGGCGGCATGTCGCTTTCGTTCAGCACTTTGTT
CATGCTGTAAAGGTCTTCAGCTGTGAAGTCGGGCCACAGGAAGTTCACAGCGGCCCAATGTACGAATTTGCGGTTCATAGCACCGGTCGCGGTCAATCCT
ATGCCACCCTCACCGTCAGCATAGGCAACGGACAGAAGCATGCCGCGGAAGAGGTGACAGCGCGGCGACATCGACGTCACCCTGCAGCTTGATTTCCGGA
AGCATCGTGCAGCTTTGATCCCTACCCGCTCAATTCAGATAAAAGCGAGTATCAGCCGGCGACTGAACAATTGCTATTGAGAAAGCTAAAGCCGAAGAGG
TGTTCTTTCACCCGCCCCCGCTCCGCCCTTTCAACCCGGCCCAGCCGGTCGGATCGGGGGCTGATCATCGGTGCCAGTGTCGCGTTTCTAACTGGCCGAC
AGCGTCGCAGCCCTATTCGGCTTTGACA
Protein section
ORF number : 2
ORF 2
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
711 bp | 236 aa | 2280 | 1570 | - | No |
Annotation : Hypothetical proteinDescription :
ORF sequence :
MTSMSPRCHLFRGMLLSVAYADGEGGIGLTATGAMNRKFVHWAAVNFLWPDFTAEDLYSMNKVLNESDMPPLWVVRDTTRHLKLLRRKKDVLLPTRRGRE
FLVNPQAFFDLVATDYLYSYVHATEREAEVQARLRWWRMFLNLLNIKAREGCTPLDVVKILYPDTAPLSATEMTLEAWELKSDLQYGVLRRLCWLGLLYE
AREGLTLLQDGAFHKTPLWSACLQLESDTQSDIGVH
FLVNPQAFFDLVATDYLYSYVHATEREAEVQARLRWWRMFLNLLNIKAREGCTPLDVVKILYPDTAPLSATEMTLEAWELKSDLQYGVLRRLCWLGLLYE
AREGLTLLQDGAFHKTPLWSACLQLESDTQSDIGVH
Blast result :ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1422 bp | 473 aa | 142 | 1563 | + | No |
Chemistry : DDE
ORF sequence :
MSFMITMSQKELHRLELIQKIRDERLSVVQAAERLDLSRSQVHRLLQAYDRDGPAGLVSKKRSRPSNRRHSEEFRNAALNLIRERYLDFGPTLAREKLIE
LHRISVAKETLRQWMTEAGIWVSRRERKKRVFQPRGRRDCFGELVQIDGSHHWWFENRGPKCGLLVYIDDATGKLLHLRFAGSENTFDYLHATKAYLQQW
GKPLAFYSDKHGVFRSTHASEKDRTSGLTQFGRALYELNIDIICANTPQAKGRVERANQTLQDRLVKEMRLRGIDTIEEANAYAPEFIADFNARFGKQPR
NPKDMHRPLADHENLDGAMCRKEVRTLSQALTLRYDKVLFILDPTDLSRSLAGKKVVVCDYPDGRLEIMHESFALPYRTFDTLRSVHRAEVVDNKRLDDM
LSVVAELQAGREQQRSKGGPRRTGQTDHMFGIRDGSTGNGYQKRGRKPRTDYMNDPAVIARREKALLRQPAAE
LHRISVAKETLRQWMTEAGIWVSRRERKKRVFQPRGRRDCFGELVQIDGSHHWWFENRGPKCGLLVYIDDATGKLLHLRFAGSENTFDYLHATKAYLQQW
GKPLAFYSDKHGVFRSTHASEKDRTSGLTQFGRALYELNIDIICANTPQAKGRVERANQTLQDRLVKEMRLRGIDTIEEANAYAPEFIADFNARFGKQPR
NPKDMHRPLADHENLDGAMCRKEVRTLSQALTLRYDKVLFILDPTDLSRSLAGKKVVVCDYPDGRLEIMHESFALPYRTFDTLRSVHRAEVVDNKRLDDM
LSVVAELQAGREQQRSKGGPRRTGQTDHMFGIRDGSTGNGYQKRGRKPRTDYMNDPAVIARREKALLRQPAAE
Blast result :
Comments
ISRel10 is 70% (ORFA : the transposase) aa similar to ISMex6. The second ORF is a passenger gene annotated as hypothetical protein.
References