ISHasa1

  • Family IS200/IS605
  • Group IS1341
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
AOJE01000057 ND Halorubrum saccharovorum
Halorubrum saccharovorum DSM 1137
DNA section
IS Length : 1432 bp

Ends


Left end : AGCGGTGTAGGGCGGAATTACACGGCTTTAGCCGGCGGAGGAAGCGTGTCCCCTCCCTGAAGCATACTACCGACGATAGCACAGACTATTCCCGAACGGA II struct. : Yes
Right end : ACAATGACCGTGAACGCGACTGCCGTGGCGTCCGATCAATACGTATCGGCAGAACGGGAGTCCACTGACAAGCCCACCGCTGAAGCGGTGGGTAGCTGAC II struct. : Yes

Insertion site


Left flankLE cleavage siteRight flankRE cleavage site
AGGACGAGCGGGTCACGTCGCCTGTGACtgac

DNA sequence

AGCGGTGTAGGGCGGAATTACACGGCTTTAGCCGGCGGAGGAAGCGTGTCCCCTCCCTGAAGCATACTACCGACGATAGCACAGACTATTCCCGAACGGA
GAAATAATAATAAAGGTAAGTACGTCAATGTGACGTGGATGACGTGGGATGTCACACGTACCGTGCGCGTTCGTCTTGACGTGCCCGACGACCGCAAGCG
TGACCTCCACGCCACTAACGGCCGCTTTCAACACTGTGCGAACCGCACCAGCGAGTGGGCGTGGCGCTACCCCGACGAAGACTGTGTGACCAGCAGAAGC
GCCGCCGAAGACGCGTTGTACGCTGACCTCCGCGAAGAAACCGATGGACTCCACGCGAACCTCGTCCAGAAAGCGATCAAACGCGCCATCAAAGATATTG
ACAACGCCGTCAATAGACTCGCAAACAGCGAAAACACCAGTCAACCCGAGTACGATACGTTCAGCATCGTCTACGACAAACGAGCTGCCACCTACTACCG
CAACAAGGTGAGTCTCGCCACGGTGAACGGCCGTGTCGAGTGCGAGTACGACCTCCCCGAAAATCCCAAGGGAACACCGCACGGCGAGTACCTCCTAAAC
GAAGACTACTCCTTCTCAACCAGTACGGTCCACTACGATAGCGATGCCGACGAGTTCTACCTCCACGCGACGATGGAACGGGAACTTGATGTGGACAGTC
CTGAGAAAGCCGAGGATTCGAGCGTCCTTGGCGTGGACTGTAATGTCGACGACCACATCGCCGCAACTAGCACGGGACGTTTCATCGGTAGTGCTGACTA
CCTCAACCACCAGCGCCGCGAGTACGAAAAACGGCGTGCTAGCCTCCAGCAAATCGGGACGCGCAGCGCCCACTTGACTTGCCAGCGCATCGGTGACCGC
TTCGGGCGGTGGAGCCGTGACTACCTCCATCGATGTTCGAAAGCAATCGTGGAGGAGGCTCGTCGGCATGAATGTACGCACATCGCGTTCGAGAACTTGG
AACGGATTCGAGAGCGTATCAGCGACGGCAAGAAGTTCCAGCAGTGGGCATTCAACGCGCTGCAAACGATGGTTGCGTACAAGGCGGAAGCGTACGGTGT
CGTGGTGGACACATTGAATCCCCAGTACACAAGCCAGCAATGCTCGAAGTGCGGGTGTACGCTGGAGGAGAACCGCGACGACCAGCACTTCGAGTGCCTC
GACTGTGGATATACATCGAACGCGGACTACAATGCGGCGAAGAACATTGCCCGGAAACTCGCACTCAAACTCCAGCAGGGGCAGAAGTCCCCTGCTGGAG
GGGCGTTCTGTCAGTACGCCCTGAAGTCAGGGACAATGACCGTGAACGCGACTGCCGTGGCGTCCGATCAATACGTATCGGCAGAACGGGAGTCCACTGA
CAAGCCCACCGCTGAAGCGGTGGGTAGCTGAC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1293 bp430 aa1391431+No
ORF function : Accessory Gene
AG : TnpB

ORF sequence :

MTWDVTRTVRVRLDVPDDRKRDLHATNGRFQHCANRTSEWAWRYPDEDCVTSRSAAEDALYADLREETDGLHANLVQKAIKRAIKDIDNAVNRLANSENT
SQPEYDTFSIVYDKRAATYYRNKVSLATVNGRVECEYDLPENPKGTPHGEYLLNEDYSFSTSTVHYDSDADEFYLHATMERELDVDSPEKAEDSSVLGVD
CNVDDHIAATSTGRFIGSADYLNHQRREYEKRRASLQQIGTRSAHLTCQRIGDRFGRWSRDYLHRCSKAIVEEARRHECTHIAFENLERIRERISDGKKF
QQWAFNALQTMVAYKAEAYGVVVDTLNPQYTSQQCSKCGCTLEENRDDQHFECLDCGYTSNADYNAAKNIARKLALKLQQGQKSPAGGAFCQYALKSGTM
TVNATAVASDQYVSAERESTDKPTAEAVGS

 

Blast result :
Comments
ISHasa1 is 92% (TnpB) aa similar to ISHtu5.
References
1] Friedhelm Pfeiffer (2015) Direct submission
2] Becker,E.A., Seitzer,P., Tritt,A., Larsen,D., Yao,A., Wu,D., Darling,A., Eisen,J.A. and Facciotti,M.T. (2012) Direct submission GenBank.