ISHasa1
- Family IS200/IS605
- Group IS1341
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
AOJE01000057 | ND | Halorubrum saccharovorum | Halorubrum saccharovorum DSM 1137 |
DNA section
IS Length : 1432 bp
Ends
Left end : AGCGGTGTAGGGCGGAATTACACGGCTTTAGCCGGCGGAGGAAGCGTGTCCCCTCCCTGAAGCATACTACCGACGATAGCACAGACTATTCCCGAACGGA II struct. : Yes
Right end : ACAATGACCGTGAACGCGACTGCCGTGGCGTCCGATCAATACGTATCGGCAGAACGGGAGTCCACTGACAAGCCCACCGCTGAAGCGGTGGGTAGCTGAC II struct. : Yes
Insertion site
Left flank | LE cleavage site | Right flank | RE cleavage site |
---|---|---|---|
AGGACGAGCGGG | TCAC | GTCGCCTGTGAC | tgac |
DNA sequence
AGCGGTGTAGGGCGGAATTACACGGCTTTAGCCGGCGGAGGAAGCGTGTCCCCTCCCTGAAGCATACTACCGACGATAGCACAGACTATTCCCGAACGGA
GAAATAATAATAAAGGTAAGTACGTCAATGTGACGTGGATGACGTGGGATGTCACACGTACCGTGCGCGTTCGTCTTGACGTGCCCGACGACCGCAAGCG
TGACCTCCACGCCACTAACGGCCGCTTTCAACACTGTGCGAACCGCACCAGCGAGTGGGCGTGGCGCTACCCCGACGAAGACTGTGTGACCAGCAGAAGC
GCCGCCGAAGACGCGTTGTACGCTGACCTCCGCGAAGAAACCGATGGACTCCACGCGAACCTCGTCCAGAAAGCGATCAAACGCGCCATCAAAGATATTG
ACAACGCCGTCAATAGACTCGCAAACAGCGAAAACACCAGTCAACCCGAGTACGATACGTTCAGCATCGTCTACGACAAACGAGCTGCCACCTACTACCG
CAACAAGGTGAGTCTCGCCACGGTGAACGGCCGTGTCGAGTGCGAGTACGACCTCCCCGAAAATCCCAAGGGAACACCGCACGGCGAGTACCTCCTAAAC
GAAGACTACTCCTTCTCAACCAGTACGGTCCACTACGATAGCGATGCCGACGAGTTCTACCTCCACGCGACGATGGAACGGGAACTTGATGTGGACAGTC
CTGAGAAAGCCGAGGATTCGAGCGTCCTTGGCGTGGACTGTAATGTCGACGACCACATCGCCGCAACTAGCACGGGACGTTTCATCGGTAGTGCTGACTA
CCTCAACCACCAGCGCCGCGAGTACGAAAAACGGCGTGCTAGCCTCCAGCAAATCGGGACGCGCAGCGCCCACTTGACTTGCCAGCGCATCGGTGACCGC
TTCGGGCGGTGGAGCCGTGACTACCTCCATCGATGTTCGAAAGCAATCGTGGAGGAGGCTCGTCGGCATGAATGTACGCACATCGCGTTCGAGAACTTGG
AACGGATTCGAGAGCGTATCAGCGACGGCAAGAAGTTCCAGCAGTGGGCATTCAACGCGCTGCAAACGATGGTTGCGTACAAGGCGGAAGCGTACGGTGT
CGTGGTGGACACATTGAATCCCCAGTACACAAGCCAGCAATGCTCGAAGTGCGGGTGTACGCTGGAGGAGAACCGCGACGACCAGCACTTCGAGTGCCTC
GACTGTGGATATACATCGAACGCGGACTACAATGCGGCGAAGAACATTGCCCGGAAACTCGCACTCAAACTCCAGCAGGGGCAGAAGTCCCCTGCTGGAG
GGGCGTTCTGTCAGTACGCCCTGAAGTCAGGGACAATGACCGTGAACGCGACTGCCGTGGCGTCCGATCAATACGTATCGGCAGAACGGGAGTCCACTGA
CAAGCCCACCGCTGAAGCGGTGGGTAGCTGAC
GAAATAATAATAAAGGTAAGTACGTCAATGTGACGTGGATGACGTGGGATGTCACACGTACCGTGCGCGTTCGTCTTGACGTGCCCGACGACCGCAAGCG
TGACCTCCACGCCACTAACGGCCGCTTTCAACACTGTGCGAACCGCACCAGCGAGTGGGCGTGGCGCTACCCCGACGAAGACTGTGTGACCAGCAGAAGC
GCCGCCGAAGACGCGTTGTACGCTGACCTCCGCGAAGAAACCGATGGACTCCACGCGAACCTCGTCCAGAAAGCGATCAAACGCGCCATCAAAGATATTG
ACAACGCCGTCAATAGACTCGCAAACAGCGAAAACACCAGTCAACCCGAGTACGATACGTTCAGCATCGTCTACGACAAACGAGCTGCCACCTACTACCG
CAACAAGGTGAGTCTCGCCACGGTGAACGGCCGTGTCGAGTGCGAGTACGACCTCCCCGAAAATCCCAAGGGAACACCGCACGGCGAGTACCTCCTAAAC
GAAGACTACTCCTTCTCAACCAGTACGGTCCACTACGATAGCGATGCCGACGAGTTCTACCTCCACGCGACGATGGAACGGGAACTTGATGTGGACAGTC
CTGAGAAAGCCGAGGATTCGAGCGTCCTTGGCGTGGACTGTAATGTCGACGACCACATCGCCGCAACTAGCACGGGACGTTTCATCGGTAGTGCTGACTA
CCTCAACCACCAGCGCCGCGAGTACGAAAAACGGCGTGCTAGCCTCCAGCAAATCGGGACGCGCAGCGCCCACTTGACTTGCCAGCGCATCGGTGACCGC
TTCGGGCGGTGGAGCCGTGACTACCTCCATCGATGTTCGAAAGCAATCGTGGAGGAGGCTCGTCGGCATGAATGTACGCACATCGCGTTCGAGAACTTGG
AACGGATTCGAGAGCGTATCAGCGACGGCAAGAAGTTCCAGCAGTGGGCATTCAACGCGCTGCAAACGATGGTTGCGTACAAGGCGGAAGCGTACGGTGT
CGTGGTGGACACATTGAATCCCCAGTACACAAGCCAGCAATGCTCGAAGTGCGGGTGTACGCTGGAGGAGAACCGCGACGACCAGCACTTCGAGTGCCTC
GACTGTGGATATACATCGAACGCGGACTACAATGCGGCGAAGAACATTGCCCGGAAACTCGCACTCAAACTCCAGCAGGGGCAGAAGTCCCCTGCTGGAG
GGGCGTTCTGTCAGTACGCCCTGAAGTCAGGGACAATGACCGTGAACGCGACTGCCGTGGCGTCCGATCAATACGTATCGGCAGAACGGGAGTCCACTGA
CAAGCCCACCGCTGAAGCGGTGGGTAGCTGAC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1293 bp | 430 aa | 139 | 1431 | + | No |
AG : TnpB
ORF sequence :
MTWDVTRTVRVRLDVPDDRKRDLHATNGRFQHCANRTSEWAWRYPDEDCVTSRSAAEDALYADLREETDGLHANLVQKAIKRAIKDIDNAVNRLANSENT
SQPEYDTFSIVYDKRAATYYRNKVSLATVNGRVECEYDLPENPKGTPHGEYLLNEDYSFSTSTVHYDSDADEFYLHATMERELDVDSPEKAEDSSVLGVD
CNVDDHIAATSTGRFIGSADYLNHQRREYEKRRASLQQIGTRSAHLTCQRIGDRFGRWSRDYLHRCSKAIVEEARRHECTHIAFENLERIRERISDGKKF
QQWAFNALQTMVAYKAEAYGVVVDTLNPQYTSQQCSKCGCTLEENRDDQHFECLDCGYTSNADYNAAKNIARKLALKLQQGQKSPAGGAFCQYALKSGTM
TVNATAVASDQYVSAERESTDKPTAEAVGS
SQPEYDTFSIVYDKRAATYYRNKVSLATVNGRVECEYDLPENPKGTPHGEYLLNEDYSFSTSTVHYDSDADEFYLHATMERELDVDSPEKAEDSSVLGVD
CNVDDHIAATSTGRFIGSADYLNHQRREYEKRRASLQQIGTRSAHLTCQRIGDRFGRWSRDYLHRCSKAIVEEARRHECTHIAFENLERIRERISDGKKF
QQWAFNALQTMVAYKAEAYGVVVDTLNPQYTSQQCSKCGCTLEENRDDQHFECLDCGYTSNADYNAAKNIARKLALKLQQGQKSPAGGAFCQYALKSGTM
TVNATAVASDQYVSAERESTDKPTAEAVGS
Blast result :
Comments
ISHasa1 is 92% (TnpB) aa similar to ISHtu5.
References
1] Friedhelm Pfeiffer (2015) Direct submission
2] Becker,E.A., Seitzer,P., Tritt,A., Larsen,D., Yao,A., Wu,D., Darling,A., Eisen,J.A. and Facciotti,M.T. (2012) Direct submission GenBank.
2] Becker,E.A., Seitzer,P., Tritt,A., Larsen,D., Yao,A., Wu,D., Darling,A., Eisen,J.A. and Facciotti,M.T. (2012) Direct submission GenBank.