ISH1A

  • Family IS5
  • Group ISH1
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
AM774415 ND Halobacterium salinarum
Halobacterium salinarum R1
Halobacterium salinarum DSM 671
Halobacterium salinarum R1 plasmid PHS3
DNA section
IS Length : 1122 bp

Ends


IR Length : 11/16

IRL : TGCCTTGTTTTGCCACCGATTGAGGGAAGTTTCAGACTCTCTCCCGGGAA
IRR : TGCCTCGTTGAATCACAAGACAGCGTCGGGGTAGGGAAGACTATTCGCAG

Insertion site


Left flankDirect repeatRight flankDR Length
ACTCTCGGTTGAAGAGATCATCGACCGCGTCG8
AGAGGAAGTTGGTGATGAGTTCGGAGCCGACC8
GAGTATGCTTGAACCCGTAGTGTACTTGAACA8
TGTGGAAGTCGAAGTCGAGTTCAAGCGCGGGC8

DNA sequence

TGCCTTGTTTTGCCACCGATTGAGGGAAGTTTCAGACTCTCTCCCGGGAAGATTCCGTCAAGCTAACCAGGAATTGGACGCCGTCTGGCGATATGGCATC
GCTCAGACGGCTTGCTTGGATGTGTCGAAACCTTGCCAAACAGCACGTTGACGATCCGGACGTACCCGCCGCGCCGTCCGGCGCGGGCGGGTACGCCGAG
TGGGTGCAGATCGCGTTGATTCTGTACCGTGTCGAACTGGAAAAGAGCCTCCGTGAATCCGAGGACTACCTCAACGAGATGCCCGGTGTTCTTGCCGTGT
TTGGACTTGACGAAGCACCACACTACAGCTCGTTCTGCCGGTGGGAAAACGAGTATCGAATGCGTGAGCTCCGCCGCCTGCTCCGCGCTTCGGCGGAGCA
GGCGGGCTGGAGTGGCGAAGCCGCGATTGACGCGAGCGGCTTCCAGCGCGATCAAACCAGCTACCACTACCGCGACCGCGCGAATTACTCGTTCCAGTCG
ATGAAGACGACGATCTTGATCGACGTGAACTCGCTAGCGATCAAGGACGTTCACTACACGACGCAGAAGGCCTGGGACGGCCACATTGGGATGCAGGTCT
TCCGCCGGAACGCGGAAGACCTGCGGGTGCTGTCTGCTGACGCGAACTACTCGTGGAGCGACCTCCGTGAGGAGTGTCGCTCCGAATCAACGCGACCGTT
GATCAAGCACAGGGAGCAAACACCGTTGCAGAAGGCTCACAACGCCCGGATGAACGAGGACTACAACCAACGCTGGATGAGTGAAACCGGCTTCTCGCAG
TTGAAGGAAGACGACGGCGAGAAGCTGCGCTCCCGGAGCTGGCACGGCCAGTTCCGGGAGCTGACTCGGAAGTGCATCATCCATAACCTGACGCAGGCGG
CGAGTTAAGGGCTCGCCGCCTGCTCGCTTTCTCCGTACGTATCCGGGAGAGGCATCGCCGTCGTCATCGGAACAACGAAGCAAGATACCATAGTTGTGAC
CCTTCAGCAACCGCCGTGAGTGACAGCTACTGCATCTTCTGAGGTCAAGAACCCGTCTCTGACGCTGTGAAACTGCGAATAGTCTTCCCTACCCCGACGC
TGTCTTGTGATTCAACGAGGCA
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
816 bp271 aa93908+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MASLRRLAWMCRNLAKQHVDDPDVPAAPSGAGGYAEWVQIALILYRVELEKSLRESEDYLNEMPGVLAVFGLDEAPHYSSFCRWENEYRMRELRRLLRAS
AEQAGWSGEAAIDASGFQRDQTSYHYRDRANYSFQSMKTTILIDVNSLAIKDVHYTTQKAWDGHIGMQVFRRNAEDLRVLSADANYSWSDLREECRSEST
RPLIKHREQTPLQKAHNARMNEDYNQRWMSETGFSQLKEDDGEKLRSRSWHGQFRELTRKCIIHNLTQAAS

 

Blast result :
Comments
ISH1A is 93% aa similar to ISH1.
References
1] Pfeiffer F., Schuster S.C., Broicher A., Falb M., Palm P., Rodewald K., Ruepp.A., Soppa J., Tittor J., Oesterhelt D. (2008) Genomics 91, 335-346