ISH1A
- Family IS5
- Group ISH1
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
AM774415 | ND | Halobacterium salinarum | Halobacterium salinarum R1 Halobacterium salinarum DSM 671 Halobacterium salinarum R1 plasmid PHS3 |
DNA section
IS Length : 1122 bp
Ends
IR Length : 11/16
IRL : TGCCTTGTTTTGCCACCGATTGAGGGAAGTTTCAGACTCTCTCCCGGGAA
IRR : TGCCTCGTTGAATCACAAGACAGCGTCGGGGTAGGGAAGACTATTCGCAG
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
ACTCTCGGTTGA | AGAGATCA | TCGACCGCGTCG | 8 |
AGAGGAAGTTGG | TGATGAGT | TCGGAGCCGACC | 8 |
GAGTATGCTTGA | ACCCGTAG | TGTACTTGAACA | 8 |
TGTGGAAGTCGA | AGTCGAGT | TCAAGCGCGGGC | 8 |
DNA sequence
TGCCTTGTTTTGCCACCGATTGAGGGAAGTTTCAGACTCTCTCCCGGGAAGATTCCGTCAAGCTAACCAGGAATTGGACGCCGTCTGGCGATATGGCATC
GCTCAGACGGCTTGCTTGGATGTGTCGAAACCTTGCCAAACAGCACGTTGACGATCCGGACGTACCCGCCGCGCCGTCCGGCGCGGGCGGGTACGCCGAG
TGGGTGCAGATCGCGTTGATTCTGTACCGTGTCGAACTGGAAAAGAGCCTCCGTGAATCCGAGGACTACCTCAACGAGATGCCCGGTGTTCTTGCCGTGT
TTGGACTTGACGAAGCACCACACTACAGCTCGTTCTGCCGGTGGGAAAACGAGTATCGAATGCGTGAGCTCCGCCGCCTGCTCCGCGCTTCGGCGGAGCA
GGCGGGCTGGAGTGGCGAAGCCGCGATTGACGCGAGCGGCTTCCAGCGCGATCAAACCAGCTACCACTACCGCGACCGCGCGAATTACTCGTTCCAGTCG
ATGAAGACGACGATCTTGATCGACGTGAACTCGCTAGCGATCAAGGACGTTCACTACACGACGCAGAAGGCCTGGGACGGCCACATTGGGATGCAGGTCT
TCCGCCGGAACGCGGAAGACCTGCGGGTGCTGTCTGCTGACGCGAACTACTCGTGGAGCGACCTCCGTGAGGAGTGTCGCTCCGAATCAACGCGACCGTT
GATCAAGCACAGGGAGCAAACACCGTTGCAGAAGGCTCACAACGCCCGGATGAACGAGGACTACAACCAACGCTGGATGAGTGAAACCGGCTTCTCGCAG
TTGAAGGAAGACGACGGCGAGAAGCTGCGCTCCCGGAGCTGGCACGGCCAGTTCCGGGAGCTGACTCGGAAGTGCATCATCCATAACCTGACGCAGGCGG
CGAGTTAAGGGCTCGCCGCCTGCTCGCTTTCTCCGTACGTATCCGGGAGAGGCATCGCCGTCGTCATCGGAACAACGAAGCAAGATACCATAGTTGTGAC
CCTTCAGCAACCGCCGTGAGTGACAGCTACTGCATCTTCTGAGGTCAAGAACCCGTCTCTGACGCTGTGAAACTGCGAATAGTCTTCCCTACCCCGACGC
TGTCTTGTGATTCAACGAGGCA
GCTCAGACGGCTTGCTTGGATGTGTCGAAACCTTGCCAAACAGCACGTTGACGATCCGGACGTACCCGCCGCGCCGTCCGGCGCGGGCGGGTACGCCGAG
TGGGTGCAGATCGCGTTGATTCTGTACCGTGTCGAACTGGAAAAGAGCCTCCGTGAATCCGAGGACTACCTCAACGAGATGCCCGGTGTTCTTGCCGTGT
TTGGACTTGACGAAGCACCACACTACAGCTCGTTCTGCCGGTGGGAAAACGAGTATCGAATGCGTGAGCTCCGCCGCCTGCTCCGCGCTTCGGCGGAGCA
GGCGGGCTGGAGTGGCGAAGCCGCGATTGACGCGAGCGGCTTCCAGCGCGATCAAACCAGCTACCACTACCGCGACCGCGCGAATTACTCGTTCCAGTCG
ATGAAGACGACGATCTTGATCGACGTGAACTCGCTAGCGATCAAGGACGTTCACTACACGACGCAGAAGGCCTGGGACGGCCACATTGGGATGCAGGTCT
TCCGCCGGAACGCGGAAGACCTGCGGGTGCTGTCTGCTGACGCGAACTACTCGTGGAGCGACCTCCGTGAGGAGTGTCGCTCCGAATCAACGCGACCGTT
GATCAAGCACAGGGAGCAAACACCGTTGCAGAAGGCTCACAACGCCCGGATGAACGAGGACTACAACCAACGCTGGATGAGTGAAACCGGCTTCTCGCAG
TTGAAGGAAGACGACGGCGAGAAGCTGCGCTCCCGGAGCTGGCACGGCCAGTTCCGGGAGCTGACTCGGAAGTGCATCATCCATAACCTGACGCAGGCGG
CGAGTTAAGGGCTCGCCGCCTGCTCGCTTTCTCCGTACGTATCCGGGAGAGGCATCGCCGTCGTCATCGGAACAACGAAGCAAGATACCATAGTTGTGAC
CCTTCAGCAACCGCCGTGAGTGACAGCTACTGCATCTTCTGAGGTCAAGAACCCGTCTCTGACGCTGTGAAACTGCGAATAGTCTTCCCTACCCCGACGC
TGTCTTGTGATTCAACGAGGCA
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
816 bp | 271 aa | 93 | 908 | + | No |
Chemistry : DDE
ORF sequence :
MASLRRLAWMCRNLAKQHVDDPDVPAAPSGAGGYAEWVQIALILYRVELEKSLRESEDYLNEMPGVLAVFGLDEAPHYSSFCRWENEYRMRELRRLLRAS
AEQAGWSGEAAIDASGFQRDQTSYHYRDRANYSFQSMKTTILIDVNSLAIKDVHYTTQKAWDGHIGMQVFRRNAEDLRVLSADANYSWSDLREECRSEST
RPLIKHREQTPLQKAHNARMNEDYNQRWMSETGFSQLKEDDGEKLRSRSWHGQFRELTRKCIIHNLTQAAS
AEQAGWSGEAAIDASGFQRDQTSYHYRDRANYSFQSMKTTILIDVNSLAIKDVHYTTQKAWDGHIGMQVFRRNAEDLRVLSADANYSWSDLREECRSEST
RPLIKHREQTPLQKAHNARMNEDYNQRWMSETGFSQLKEDDGEKLRSRSWHGQFRELTRKCIIHNLTQAAS
Blast result :
Comments
ISH1A is 93% aa similar to ISH1.
References
1] Pfeiffer F., Schuster S.C., Broicher A., Falb M., Palm P., Rodewald K., Ruepp.A., Soppa J., Tittor J., Oesterhelt D. (2008) Genomics 91, 335-346