ISMae41

  • Family IS200/IS605
  • Group IS1341
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
AP009552 ND Microcystis aeruginosa
Microcystis aeruginosa NIES-843
DNA section
IS Length : 1321 bp

Ends


Left end : CGAAAATTTGGGTCTGAAACCCCGTCGTTCTACGACGGCTTTACTGTTAAATATGAGCATCGTTTACGAAATATATGCTAAAATGTGAGGTATGGAAAAA II struct. : Yes
Right end : ATCTGTTAAGGCAGGTGCGGAACCCCGCAAGGGAAAGAAGCAGAAACCTAAATCGTGAGGTTTGGGAATCACCGTCCGTTTACGGCGGTGAGGATGTCAA II struct. : Yes

Insertion site


Left flankLE cleavage siteRight flankRE cleavage site
CGCCCCTCCTTCATAAAAATCGTCtcaa
TTCAGTACATTCATATTAGGAGAATCAA
TTTTCTTGGCTCATGCTTGTTCCTTCAA
GAAGATGTTGTCATGTCAGCTAAAtcaa

DNA sequence

CGAAAATTTGGGTCTGAAACCCCGTCGTTCTACGACGGCTTTACTGTTAAATATGAGCATCGTTTACGAAATATATGCTAAAATGTGAGGTATGGAAAAA
GCCTATTCGTTTCGATTTTACCCCACACCCGAACAAGAGTCGCTATTGCGGCGCACTTTGGGCTGTGTAAGATTAGTTTACAATAAAGCTCTCCATGTCA
GAACACAAGCATGGTACGAAAGACAAGAAAGAGTAGGCTACGCTCAAACTTCTTCAATGCTAACCGATTGGAAAAAGCAAGAAGAATTAAACTTTCTCAA
TGAAGTAAGCTGTGTACCCTTACAACAAGGGTTAAGACATTTACAAACAGCTTTCACTAATTTCTTTGCTGGTCGTACTAAGTATCCTAACTTTAAGAAA
AAACATCAGGGAGGAAGTGCCGAATTTACCAAATCTGCTTTTACAATTAAAGACAGACAAATCTATTTAGCTAAATGCACAGAACCTTTACCTATTCGAT
GGTCAAGACACATCCCAGAAAGCTGTGAACCAAGCACAGTAACAGTCAGATTACATCCTTCAGGACGTTGGCATATCTCAATAAGATTTGATGACCCAAC
GATTAAGCCATTACCAGTAACAGATAAAGCCATTGGAATTGACTTAGGAATTAGTAGCCTTGTCATTACCAGCGATGGTGACAAAGTATCTAATCCTGAG
CATTTTAAAAAGCATTATCGGAGACTGCGAAGAGCATCTAAAAGTCTTTCTCGAAAACAGAAAGGGTCAAAAAATCGGGAAAAAGCGAGAATCAAAGTAG
CCAAGATTCACGCTCGAATCACCGATAACAGAAAAGACCATTTACACAAGCTAACCACTCAATTAGTTCGTGAAAACCAAACGATTGTGGTTGAGAATTT
AGCCGTCAAGAATATGGTCAAAAACCCGAAATTATCTCAGGCAATATCTGACGTTAGCTGGGGAGAAATCACCCGACAATTAGCCTATAAATGCCGTTGG
TACGGCAGAAATTACATCGAAATAGATAGATGGTTTCCTAGCTCTAAAAGGTGTAGTAATTGCGGGTATATTGCTGAGAAAATGCCGTTAAATATTCGAG
AATGGGACTGTCCAGACTGTGGGACACACCATGACCGAGATATTAACGCCAGTAAAAATATTTTGGCCGCAGGGCTTGCGGTGTCAGTCTGTAGAGCGAC
CATAAGACCAGAACAGAGTAAATCTGTTAAGGCAGGTGCGGAACCCCGCAAGGGAAAGAAGCAGAAACCTAAATCGTGAGGTTTGGGAATCACCGTCCGT
TTACGGCGGTGAGGATGTCAA
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1188 bp395 aa921279+No
ORF function : Accessory Gene
AG : TnpB

ORF sequence :

MEKAYSFRFYPTPEQESLLRRTLGCVRLVYNKALHVRTQAWYERQERVGYAQTSSMLTDWKKQEELNFLNEVSCVPLQQGLRHLQTAFTNFFAGRTKYPN
FKKKHQGGSAEFTKSAFTIKDRQIYLAKCTEPLPIRWSRHIPESCEPSTVTVRLHPSGRWHISIRFDDPTIKPLPVTDKAIGIDLGISSLVITSDGDKVS
NPEHFKKHYRRLRRASKSLSRKQKGSKNREKARIKVAKIHARITDNRKDHLHKLTTQLVRENQTIVVENLAVKNMVKNPKLSQAISDVSWGEITRQLAYK
CRWYGRNYIEIDRWFPSSKRCSNCGYIAEKMPLNIREWDCPDCGTHHDRDINASKNILAAGLAVSVCRATIRPEQSKSVKAGAEPRKGKKQKPKS

 

Blast result :
Comments
ISMae41 is 83% (TnpB) aa similar to ISTel3.
References
1] Kaneko,T., Nakajima,N., Okamoto,S., Suzuki,I., Tanabe,Y., Tamaoki,M., Nakamura,Y., Kasai,F., Watanabe,A., Kawashima,K., Kishida,Y., Ono,A., Shimizu,Y., Takahashi,C., Minami,C., Fujishiro,T., Kohara,M., Katoh,M., Nakazaki,N., Nakayama,S., Yamada,M., Tabata,S. and Watanabe,M.M. (2007) DNA Res. 14 (6), 247-256