ISHwa32

  • Family IS200/IS605
  • Group IS1341
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
ARPX01000164 ND Haloquadratum walsbyi
Haloquadratum walsbyi
DNA section
IS Length : 1473 bp

Ends


Left end : CTAAATTCGAGGGCAAGACCCCTTCCTCAAGGAGTGAGCAAAGCGAACGAATACGGAGGGGATACGCCCGACAGCACAAAATATAAATAACAGTCTAACA II struct. : Yes
Right end : CCCTAATCTTGAATCTGGTCAGACACTGAAGGAGACTTCGCTGGAAGCCCCACCCTCAAGGAAGCCGTCGCAGACGGCTGAGTAGGGTGGGGTAGTTCAC II struct. : Yes

Insertion site


Left flankLE cleavage siteRight flankRE cleavage site
GAGCAATCCGTGTTATGCTGCTTCCACGtcac

DNA sequence

CTAAATTCGAGGGCAAGACCCCTTCCTCAAGGAGTGAGCAAAGCGAACGAATACGGAGGGGATACGCCCGACAGCACAAAATATAAATAACAGTCTAACA
TATAGCATAATAAGATGGTACAAACGCTCCAACAAAACCTCACCAACCTCGACGCGGACGAGTACGAGGTAATGCGGAGTCTCTGCCATCTCTCGAAAAA
CCTCTACAACAAAACCCTCTACGAAGTGCGACAACACTACTTCGACAACGGGGACGGGGAGTACCTCAACTACTACGACGCTTACGACCAGTTGAAATCC
AACTGGAACTACGAGGTACTGCCAAGCCAACTCGCACAACAAACAATGAAACAAGTCGATAGAGGGTTCAAATCCTTTTTCAACCTCGTAGAGAAAAAAC
GAGACAACAAGTACGATGCCGACATCAGCCCTCCATCGTACCTCGACAAAGACGGCTTCTACACGCTGGAGTTTCCTTCGCAATCATTCCAAGTCAAAGA
AGATCACATCCGACTTGGCATCCCGTACTCGTACCGAAATGAGTTCGATTGCGAGCTAACCGAGATTCAAATACCGTTCACATACGATGAGGTGAAAGAA
GCAAACATCAAGCGTATACAAATCCTACCACAAGCTGATGCTCAGTATTTCGAGTACCGTGTATTATACGAGCAAGATGTAGAGGAAATTGAAACAGTTG
AGGGGTCGTGGCTTGGAATTGACCTTGGCGTGGACAATCTTGCAACGTGTTGTGATTGGCGAGGTTGTTCATTCATCGTGGATGGACGACATCTCAAATC
TCTAAATCGCCGTCATAATCAAAAAATTGCTCACTACCAGTCAATCAAAGACAAGCAAGGTATCGATGGCACGACCCAGCGAATCGAAAGACTGTATCAA
AATCGTCGGTACGGCATCAACGACTACCTCAACAAAGCCGTCCGACTCATTACTGACTACTGTATCGAGCATCAAATCGACACAGTGTATGTCGGTGATG
GGAAAGGGTGGAAGCAGAACGTGAATCTTGGTGATAAAACGAATCAGAACTTCGTCCAAATTCCGTTCGATAAACTCAAACAGAAACTCAAGCACAAGCT
CGAAGCTCGTGGTATCACGTTCGATTTAGTGCCTGAATCGCACACATCGAAATGCTCGTTCTATGATGAAGAACCCGTGGAACATCACGAGGAGTACGTT
GGTGAGCGAGTGGAACGTGGCTTGTTTGAGTCGTCGGATGGGACTCGATATAATGCGGATGTAAATGGTGCGGTTAATATGGCTCGGAAGAACACATGTA
AGCCCAATTCGGAGTTATTTAACTCGGAGGAGGGTGTAGAGCGGGTTGTGGACGCCCCACAGCGAATAAGCCTCCCTAATCTTGAATCTGGTCAGACACT
GAAGGAGACTTCGCTGGAAGCCCCACCCTCAAGGAAGCCGTCGCAGACGGCTGAGTAGGGTGGGGTAGTTCAC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1344 bp447 aa1151458+No
ORF function : Accessory Gene
AG : TnpB

ORF sequence :

MVQTLQQNLTNLDADEYEVMRSLCHLSKNLYNKTLYEVRQHYFDNGDGEYLNYYDAYDQLKSNWNYEVLPSQLAQQTMKQVDRGFKSFFNLVEKKRDNKY
DADISPPSYLDKDGFYTLEFPSQSFQVKEDHIRLGIPYSYRNEFDCELTEIQIPFTYDEVKEANIKRIQILPQADAQYFEYRVLYEQDVEEIETVEGSWL
GIDLGVDNLATCCDWRGCSFIVDGRHLKSLNRRHNQKIAHYQSIKDKQGIDGTTQRIERLYQNRRYGINDYLNKAVRLITDYCIEHQIDTVYVGDGKGWK
QNVNLGDKTNQNFVQIPFDKLKQKLKHKLEARGITFDLVPESHTSKCSFYDEEPVEHHEEYVGERVERGLFESSDGTRYNADVNGAVNMARKNTCKPNSE
LFNSEEGVERVVDAPQRISLPNLESGQTLKETSLEAPPSRKPSQTAE

 

Blast result :
Comments
ISHwa32 is 52% (TnpB) aa similar to ISBth14.
References
1] Friedhelm Pfeiffer (2015) Direct submission
2] Podell,S., Ugalde,J.A., Narasingarao,P., Banfield,J.F., Heidelberg,K.B. and Allen,E.E. (2013) PLoS ONE 8 (4), E61692