ISHwa32
- Family IS200/IS605
- Group IS1341
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
ARPX01000164 | ND | Haloquadratum walsbyi | Haloquadratum walsbyi |
DNA section
IS Length : 1473 bp
Ends
Left end : CTAAATTCGAGGGCAAGACCCCTTCCTCAAGGAGTGAGCAAAGCGAACGAATACGGAGGGGATACGCCCGACAGCACAAAATATAAATAACAGTCTAACA II struct. : Yes
Right end : CCCTAATCTTGAATCTGGTCAGACACTGAAGGAGACTTCGCTGGAAGCCCCACCCTCAAGGAAGCCGTCGCAGACGGCTGAGTAGGGTGGGGTAGTTCAC II struct. : Yes
Insertion site
Left flank | LE cleavage site | Right flank | RE cleavage site |
---|---|---|---|
GAGCAATCCGTG | TTAT | GCTGCTTCCACG | tcac |
DNA sequence
CTAAATTCGAGGGCAAGACCCCTTCCTCAAGGAGTGAGCAAAGCGAACGAATACGGAGGGGATACGCCCGACAGCACAAAATATAAATAACAGTCTAACA
TATAGCATAATAAGATGGTACAAACGCTCCAACAAAACCTCACCAACCTCGACGCGGACGAGTACGAGGTAATGCGGAGTCTCTGCCATCTCTCGAAAAA
CCTCTACAACAAAACCCTCTACGAAGTGCGACAACACTACTTCGACAACGGGGACGGGGAGTACCTCAACTACTACGACGCTTACGACCAGTTGAAATCC
AACTGGAACTACGAGGTACTGCCAAGCCAACTCGCACAACAAACAATGAAACAAGTCGATAGAGGGTTCAAATCCTTTTTCAACCTCGTAGAGAAAAAAC
GAGACAACAAGTACGATGCCGACATCAGCCCTCCATCGTACCTCGACAAAGACGGCTTCTACACGCTGGAGTTTCCTTCGCAATCATTCCAAGTCAAAGA
AGATCACATCCGACTTGGCATCCCGTACTCGTACCGAAATGAGTTCGATTGCGAGCTAACCGAGATTCAAATACCGTTCACATACGATGAGGTGAAAGAA
GCAAACATCAAGCGTATACAAATCCTACCACAAGCTGATGCTCAGTATTTCGAGTACCGTGTATTATACGAGCAAGATGTAGAGGAAATTGAAACAGTTG
AGGGGTCGTGGCTTGGAATTGACCTTGGCGTGGACAATCTTGCAACGTGTTGTGATTGGCGAGGTTGTTCATTCATCGTGGATGGACGACATCTCAAATC
TCTAAATCGCCGTCATAATCAAAAAATTGCTCACTACCAGTCAATCAAAGACAAGCAAGGTATCGATGGCACGACCCAGCGAATCGAAAGACTGTATCAA
AATCGTCGGTACGGCATCAACGACTACCTCAACAAAGCCGTCCGACTCATTACTGACTACTGTATCGAGCATCAAATCGACACAGTGTATGTCGGTGATG
GGAAAGGGTGGAAGCAGAACGTGAATCTTGGTGATAAAACGAATCAGAACTTCGTCCAAATTCCGTTCGATAAACTCAAACAGAAACTCAAGCACAAGCT
CGAAGCTCGTGGTATCACGTTCGATTTAGTGCCTGAATCGCACACATCGAAATGCTCGTTCTATGATGAAGAACCCGTGGAACATCACGAGGAGTACGTT
GGTGAGCGAGTGGAACGTGGCTTGTTTGAGTCGTCGGATGGGACTCGATATAATGCGGATGTAAATGGTGCGGTTAATATGGCTCGGAAGAACACATGTA
AGCCCAATTCGGAGTTATTTAACTCGGAGGAGGGTGTAGAGCGGGTTGTGGACGCCCCACAGCGAATAAGCCTCCCTAATCTTGAATCTGGTCAGACACT
GAAGGAGACTTCGCTGGAAGCCCCACCCTCAAGGAAGCCGTCGCAGACGGCTGAGTAGGGTGGGGTAGTTCAC
TATAGCATAATAAGATGGTACAAACGCTCCAACAAAACCTCACCAACCTCGACGCGGACGAGTACGAGGTAATGCGGAGTCTCTGCCATCTCTCGAAAAA
CCTCTACAACAAAACCCTCTACGAAGTGCGACAACACTACTTCGACAACGGGGACGGGGAGTACCTCAACTACTACGACGCTTACGACCAGTTGAAATCC
AACTGGAACTACGAGGTACTGCCAAGCCAACTCGCACAACAAACAATGAAACAAGTCGATAGAGGGTTCAAATCCTTTTTCAACCTCGTAGAGAAAAAAC
GAGACAACAAGTACGATGCCGACATCAGCCCTCCATCGTACCTCGACAAAGACGGCTTCTACACGCTGGAGTTTCCTTCGCAATCATTCCAAGTCAAAGA
AGATCACATCCGACTTGGCATCCCGTACTCGTACCGAAATGAGTTCGATTGCGAGCTAACCGAGATTCAAATACCGTTCACATACGATGAGGTGAAAGAA
GCAAACATCAAGCGTATACAAATCCTACCACAAGCTGATGCTCAGTATTTCGAGTACCGTGTATTATACGAGCAAGATGTAGAGGAAATTGAAACAGTTG
AGGGGTCGTGGCTTGGAATTGACCTTGGCGTGGACAATCTTGCAACGTGTTGTGATTGGCGAGGTTGTTCATTCATCGTGGATGGACGACATCTCAAATC
TCTAAATCGCCGTCATAATCAAAAAATTGCTCACTACCAGTCAATCAAAGACAAGCAAGGTATCGATGGCACGACCCAGCGAATCGAAAGACTGTATCAA
AATCGTCGGTACGGCATCAACGACTACCTCAACAAAGCCGTCCGACTCATTACTGACTACTGTATCGAGCATCAAATCGACACAGTGTATGTCGGTGATG
GGAAAGGGTGGAAGCAGAACGTGAATCTTGGTGATAAAACGAATCAGAACTTCGTCCAAATTCCGTTCGATAAACTCAAACAGAAACTCAAGCACAAGCT
CGAAGCTCGTGGTATCACGTTCGATTTAGTGCCTGAATCGCACACATCGAAATGCTCGTTCTATGATGAAGAACCCGTGGAACATCACGAGGAGTACGTT
GGTGAGCGAGTGGAACGTGGCTTGTTTGAGTCGTCGGATGGGACTCGATATAATGCGGATGTAAATGGTGCGGTTAATATGGCTCGGAAGAACACATGTA
AGCCCAATTCGGAGTTATTTAACTCGGAGGAGGGTGTAGAGCGGGTTGTGGACGCCCCACAGCGAATAAGCCTCCCTAATCTTGAATCTGGTCAGACACT
GAAGGAGACTTCGCTGGAAGCCCCACCCTCAAGGAAGCCGTCGCAGACGGCTGAGTAGGGTGGGGTAGTTCAC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1344 bp | 447 aa | 115 | 1458 | + | No |
AG : TnpB
ORF sequence :
MVQTLQQNLTNLDADEYEVMRSLCHLSKNLYNKTLYEVRQHYFDNGDGEYLNYYDAYDQLKSNWNYEVLPSQLAQQTMKQVDRGFKSFFNLVEKKRDNKY
DADISPPSYLDKDGFYTLEFPSQSFQVKEDHIRLGIPYSYRNEFDCELTEIQIPFTYDEVKEANIKRIQILPQADAQYFEYRVLYEQDVEEIETVEGSWL
GIDLGVDNLATCCDWRGCSFIVDGRHLKSLNRRHNQKIAHYQSIKDKQGIDGTTQRIERLYQNRRYGINDYLNKAVRLITDYCIEHQIDTVYVGDGKGWK
QNVNLGDKTNQNFVQIPFDKLKQKLKHKLEARGITFDLVPESHTSKCSFYDEEPVEHHEEYVGERVERGLFESSDGTRYNADVNGAVNMARKNTCKPNSE
LFNSEEGVERVVDAPQRISLPNLESGQTLKETSLEAPPSRKPSQTAE
DADISPPSYLDKDGFYTLEFPSQSFQVKEDHIRLGIPYSYRNEFDCELTEIQIPFTYDEVKEANIKRIQILPQADAQYFEYRVLYEQDVEEIETVEGSWL
GIDLGVDNLATCCDWRGCSFIVDGRHLKSLNRRHNQKIAHYQSIKDKQGIDGTTQRIERLYQNRRYGINDYLNKAVRLITDYCIEHQIDTVYVGDGKGWK
QNVNLGDKTNQNFVQIPFDKLKQKLKHKLEARGITFDLVPESHTSKCSFYDEEPVEHHEEYVGERVERGLFESSDGTRYNADVNGAVNMARKNTCKPNSE
LFNSEEGVERVVDAPQRISLPNLESGQTLKETSLEAPPSRKPSQTAE
Blast result :
Comments
ISHwa32 is 52% (TnpB) aa similar to ISBth14.
References
1] Friedhelm Pfeiffer (2015) Direct submission
2] Podell,S., Ugalde,J.A., Narasingarao,P., Banfield,J.F., Heidelberg,K.B. and Allen,E.E. (2013) PLoS ONE 8 (4), E61692
2] Podell,S., Ugalde,J.A., Narasingarao,P., Banfield,J.F., Heidelberg,K.B. and Allen,E.E. (2013) PLoS ONE 8 (4), E61692