ISHalp1
- Family IS200/IS605
- Group IS1341
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
AOIV01000011 | ND | Halosarcina pallida | Halosarcina pallida JCM 14848 |
DNA section
IS Length : 1448 bp
Ends
Left end : CTGAAAGAGAGGGCGCTAAGTCTCCGTCCTCAAGGAGCGAGGCGAAGCCGAGCGAGTAGGGCGGGGATACAGTGCCCGCACGAGTCACATATACCCTATC II struct. : No
Right end : TTCGTCCATCGTCGTGGATGCAAGTCGCGTCACAGAAGCAGGAAGCCCCGCTCTCAAGGAAGCAACGCGAAGCGTTGCTGAGTAGAGCGGGGTAGTTCAC II struct. : No
Insertion site
Left flank | LE cleavage site | Right flank | RE cleavage site |
---|---|---|---|
TCTCCCCCCGAA | TTAG | GTCCGATACACC | tcac |
DNA sequence
CTGAAAGAGAGGGCGCTAAGTCTCCGTCCTCAAGGAGCGAGGCGAAGCCGAGCGAGTAGGGCGGGGATACAGTGCCCGCACGAGTCACATATACCCTATC
AATATCATTACGACTCAATTCGTACGGGTTGGCACGTCGCATGATGTACAGCCCTCGCTTCCGCTTACTCCCCACTACGGAGCAACGCGGCGCGATGGAC
TGGACGCGAAACACCGTGCGACAAACCTACAACCACGCGCTCCGCGAGTTCAACCAGATACCTGAAAACGAAGGAACGCTCCGCCAGCGCGTCTGGATGG
TCAGAGACCAACTCCCCGCGCTCAAAGACTGGTGGCCAGACCTCAAACAGGTCTACTCCACAGTCCTCCAGAAGGCCATCGAGCGAATCCGAGACAACAT
CCAGAATCTTGGGAAACTCAAAGCCAAGGGCTACAAAGCGGGGTCATTAAACTGGAAGAAACCGCGTGAGTACCGGAGCTTCACGTACCGGCAATCGGGC
TTCGAACTCGACAAGAAGAGTGGTCCGAACGGTCGAGGCCTCCTCATACTCAAGAAGCTCAAGGAAGAAACCTGCGAGATTCCCATCCGTCTTCACCGGG
ACCTTCCAGACCACAAGCAAATCAAAGAAGTCACGCTCAAGAAAGAACCCACGGGAGCGTGGTACGCCTCGTTCTGTATCAAGACCAAAGAACCCGAGAA
ACCGGATGCTGAAGACGTCGACGCTGAGGACACCGTGGGGCTTGACCTCGGGGTACTTAACTTCATTCACGACTCTGACGGACGTTCGATAGGACGACTC
AACTTGTCTGACGCCCGAGACCGACTCGAACGCGAGCAACACTCACTCTCCCGAAAAGAGTACGAGTCGAACAATTGGGAGGGACAACGGCGTCGCGTTG
CGGCTGTCCACGATCGGATGTCGAACAAGAAGCGCGACTTCAAACACAAGCTCGCGCACTTCTACACGAGAGAGTACGACGCCGTGTTCGTCGAAAACCT
CAACGTGAAGGGGATGCTCGAATCTCAGGAGAACGCGCAGAACAAGGCTGAAGTGGGTTGGCGCGACTTCATCACTATACTCGAACACCACGGTGACAAG
AACGGATGTCACGTCGTGCAGGTTGACCCGTGTGGAACGACCAAGGAGTGCGCGTCGTGTGGTGTGGAGACTCAGAAGCCGTTGTGGGTTCGAGAGCATT
CGTGCCCGGCGTGTGGGTTCGAACTTGGTAGGGATTGGAACGCAGCTCTGAACGTTCTCGATAGGGGACTACGGAAACTAGGAGTGGTTCACTCCGAAGT
AACGCCTGTGGAGACTGCGACCGCTGGGTCTACCGATGGTGACGAGAATTCGTCCATCGTCGTGGATGCAAGTCGCGTCACAGAAGCAGGAAGCCCCGCT
CTCAAGGAAGCAACGCGAAGCGTTGCTGAGTAGAGCGGGGTAGTTCAC
AATATCATTACGACTCAATTCGTACGGGTTGGCACGTCGCATGATGTACAGCCCTCGCTTCCGCTTACTCCCCACTACGGAGCAACGCGGCGCGATGGAC
TGGACGCGAAACACCGTGCGACAAACCTACAACCACGCGCTCCGCGAGTTCAACCAGATACCTGAAAACGAAGGAACGCTCCGCCAGCGCGTCTGGATGG
TCAGAGACCAACTCCCCGCGCTCAAAGACTGGTGGCCAGACCTCAAACAGGTCTACTCCACAGTCCTCCAGAAGGCCATCGAGCGAATCCGAGACAACAT
CCAGAATCTTGGGAAACTCAAAGCCAAGGGCTACAAAGCGGGGTCATTAAACTGGAAGAAACCGCGTGAGTACCGGAGCTTCACGTACCGGCAATCGGGC
TTCGAACTCGACAAGAAGAGTGGTCCGAACGGTCGAGGCCTCCTCATACTCAAGAAGCTCAAGGAAGAAACCTGCGAGATTCCCATCCGTCTTCACCGGG
ACCTTCCAGACCACAAGCAAATCAAAGAAGTCACGCTCAAGAAAGAACCCACGGGAGCGTGGTACGCCTCGTTCTGTATCAAGACCAAAGAACCCGAGAA
ACCGGATGCTGAAGACGTCGACGCTGAGGACACCGTGGGGCTTGACCTCGGGGTACTTAACTTCATTCACGACTCTGACGGACGTTCGATAGGACGACTC
AACTTGTCTGACGCCCGAGACCGACTCGAACGCGAGCAACACTCACTCTCCCGAAAAGAGTACGAGTCGAACAATTGGGAGGGACAACGGCGTCGCGTTG
CGGCTGTCCACGATCGGATGTCGAACAAGAAGCGCGACTTCAAACACAAGCTCGCGCACTTCTACACGAGAGAGTACGACGCCGTGTTCGTCGAAAACCT
CAACGTGAAGGGGATGCTCGAATCTCAGGAGAACGCGCAGAACAAGGCTGAAGTGGGTTGGCGCGACTTCATCACTATACTCGAACACCACGGTGACAAG
AACGGATGTCACGTCGTGCAGGTTGACCCGTGTGGAACGACCAAGGAGTGCGCGTCGTGTGGTGTGGAGACTCAGAAGCCGTTGTGGGTTCGAGAGCATT
CGTGCCCGGCGTGTGGGTTCGAACTTGGTAGGGATTGGAACGCAGCTCTGAACGTTCTCGATAGGGGACTACGGAAACTAGGAGTGGTTCACTCCGAAGT
AACGCCTGTGGAGACTGCGACCGCTGGGTCTACCGATGGTGACGAGAATTCGTCCATCGTCGTGGATGCAAGTCGCGTCACAGAAGCAGGAAGCCCCGCT
CTCAAGGAAGCAACGCGAAGCGTTGCTGAGTAGAGCGGGGTAGTTCAC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1293 bp | 430 aa | 141 | 1433 | + | No |
AG : TnpB
ORF sequence :
MMYSPRFRLLPTTEQRGAMDWTRNTVRQTYNHALREFNQIPENEGTLRQRVWMVRDQLPALKDWWPDLKQVYSTVLQKAIERIRDNIQNLGKLKAKGYKA
GSLNWKKPREYRSFTYRQSGFELDKKSGPNGRGLLILKKLKEETCEIPIRLHRDLPDHKQIKEVTLKKEPTGAWYASFCIKTKEPEKPDAEDVDAEDTVG
LDLGVLNFIHDSDGRSIGRLNLSDARDRLEREQHSLSRKEYESNNWEGQRRRVAAVHDRMSNKKRDFKHKLAHFYTREYDAVFVENLNVKGMLESQENAQ
NKAEVGWRDFITILEHHGDKNGCHVVQVDPCGTTKECASCGVETQKPLWVREHSCPACGFELGRDWNAALNVLDRGLRKLGVVHSEVTPVETATAGSTDG
DENSSIVVDASRVTEAGSPALKEATRSVAE
GSLNWKKPREYRSFTYRQSGFELDKKSGPNGRGLLILKKLKEETCEIPIRLHRDLPDHKQIKEVTLKKEPTGAWYASFCIKTKEPEKPDAEDVDAEDTVG
LDLGVLNFIHDSDGRSIGRLNLSDARDRLEREQHSLSRKEYESNNWEGQRRRVAAVHDRMSNKKRDFKHKLAHFYTREYDAVFVENLNVKGMLESQENAQ
NKAEVGWRDFITILEHHGDKNGCHVVQVDPCGTTKECASCGVETQKPLWVREHSCPACGFELGRDWNAALNVLDRGLRKLGVVHSEVTPVETATAGSTDG
DENSSIVVDASRVTEAGSPALKEATRSVAE
Blast result :
Comments
ISHalp1 is 86% (TnpB) aa similar to ISHarch10.
References
1] Friedhelm Pfeiffer (2015) Direct submission
2] Becker,E.A., Seitzer,P., Tritt,A., Larsen,D., Yao,A., Wu,D., Darling,A., Eisen,J.A. and Facciotti,M.T. (2012) Direct submission.
2] Becker,E.A., Seitzer,P., Tritt,A., Larsen,D., Yao,A., Wu,D., Darling,A., Eisen,J.A. and Facciotti,M.T. (2012) Direct submission.