ISHalp1

  • Family IS200/IS605
  • Group IS1341
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
AOIV01000011 ND Halosarcina pallida
Halosarcina pallida JCM 14848
DNA section
IS Length : 1448 bp

Ends


Left end : CTGAAAGAGAGGGCGCTAAGTCTCCGTCCTCAAGGAGCGAGGCGAAGCCGAGCGAGTAGGGCGGGGATACAGTGCCCGCACGAGTCACATATACCCTATC II struct. : No
Right end : TTCGTCCATCGTCGTGGATGCAAGTCGCGTCACAGAAGCAGGAAGCCCCGCTCTCAAGGAAGCAACGCGAAGCGTTGCTGAGTAGAGCGGGGTAGTTCAC II struct. : No

Insertion site


Left flankLE cleavage siteRight flankRE cleavage site
TCTCCCCCCGAATTAGGTCCGATACACCtcac

DNA sequence

CTGAAAGAGAGGGCGCTAAGTCTCCGTCCTCAAGGAGCGAGGCGAAGCCGAGCGAGTAGGGCGGGGATACAGTGCCCGCACGAGTCACATATACCCTATC
AATATCATTACGACTCAATTCGTACGGGTTGGCACGTCGCATGATGTACAGCCCTCGCTTCCGCTTACTCCCCACTACGGAGCAACGCGGCGCGATGGAC
TGGACGCGAAACACCGTGCGACAAACCTACAACCACGCGCTCCGCGAGTTCAACCAGATACCTGAAAACGAAGGAACGCTCCGCCAGCGCGTCTGGATGG
TCAGAGACCAACTCCCCGCGCTCAAAGACTGGTGGCCAGACCTCAAACAGGTCTACTCCACAGTCCTCCAGAAGGCCATCGAGCGAATCCGAGACAACAT
CCAGAATCTTGGGAAACTCAAAGCCAAGGGCTACAAAGCGGGGTCATTAAACTGGAAGAAACCGCGTGAGTACCGGAGCTTCACGTACCGGCAATCGGGC
TTCGAACTCGACAAGAAGAGTGGTCCGAACGGTCGAGGCCTCCTCATACTCAAGAAGCTCAAGGAAGAAACCTGCGAGATTCCCATCCGTCTTCACCGGG
ACCTTCCAGACCACAAGCAAATCAAAGAAGTCACGCTCAAGAAAGAACCCACGGGAGCGTGGTACGCCTCGTTCTGTATCAAGACCAAAGAACCCGAGAA
ACCGGATGCTGAAGACGTCGACGCTGAGGACACCGTGGGGCTTGACCTCGGGGTACTTAACTTCATTCACGACTCTGACGGACGTTCGATAGGACGACTC
AACTTGTCTGACGCCCGAGACCGACTCGAACGCGAGCAACACTCACTCTCCCGAAAAGAGTACGAGTCGAACAATTGGGAGGGACAACGGCGTCGCGTTG
CGGCTGTCCACGATCGGATGTCGAACAAGAAGCGCGACTTCAAACACAAGCTCGCGCACTTCTACACGAGAGAGTACGACGCCGTGTTCGTCGAAAACCT
CAACGTGAAGGGGATGCTCGAATCTCAGGAGAACGCGCAGAACAAGGCTGAAGTGGGTTGGCGCGACTTCATCACTATACTCGAACACCACGGTGACAAG
AACGGATGTCACGTCGTGCAGGTTGACCCGTGTGGAACGACCAAGGAGTGCGCGTCGTGTGGTGTGGAGACTCAGAAGCCGTTGTGGGTTCGAGAGCATT
CGTGCCCGGCGTGTGGGTTCGAACTTGGTAGGGATTGGAACGCAGCTCTGAACGTTCTCGATAGGGGACTACGGAAACTAGGAGTGGTTCACTCCGAAGT
AACGCCTGTGGAGACTGCGACCGCTGGGTCTACCGATGGTGACGAGAATTCGTCCATCGTCGTGGATGCAAGTCGCGTCACAGAAGCAGGAAGCCCCGCT
CTCAAGGAAGCAACGCGAAGCGTTGCTGAGTAGAGCGGGGTAGTTCAC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1293 bp430 aa1411433+No
ORF function : Accessory Gene
AG : TnpB

ORF sequence :

MMYSPRFRLLPTTEQRGAMDWTRNTVRQTYNHALREFNQIPENEGTLRQRVWMVRDQLPALKDWWPDLKQVYSTVLQKAIERIRDNIQNLGKLKAKGYKA
GSLNWKKPREYRSFTYRQSGFELDKKSGPNGRGLLILKKLKEETCEIPIRLHRDLPDHKQIKEVTLKKEPTGAWYASFCIKTKEPEKPDAEDVDAEDTVG
LDLGVLNFIHDSDGRSIGRLNLSDARDRLEREQHSLSRKEYESNNWEGQRRRVAAVHDRMSNKKRDFKHKLAHFYTREYDAVFVENLNVKGMLESQENAQ
NKAEVGWRDFITILEHHGDKNGCHVVQVDPCGTTKECASCGVETQKPLWVREHSCPACGFELGRDWNAALNVLDRGLRKLGVVHSEVTPVETATAGSTDG
DENSSIVVDASRVTEAGSPALKEATRSVAE

 

Blast result :
Comments
ISHalp1 is 86% (TnpB) aa similar to ISHarch10.
References
1] Friedhelm Pfeiffer (2015) Direct submission
2] Becker,E.A., Seitzer,P., Tritt,A., Larsen,D., Yao,A., Wu,D., Darling,A., Eisen,J.A. and Facciotti,M.T. (2012) Direct submission.