ISHal2
- Family IS200/IS605
- Group IS1341
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
CCDK010000001 | ND | Haloferax alexandrinus | Haloferax alexandrinus Arc-Hr |
DNA section
IS Length : 1447 bp
Ends
Left end : CTGAAAGAGAGGGCGCTAAGCCCCCTTCCTCAAGGAGCGACCGAAGGGAGCGAGTAGGGAGGGGATACAGCGCCCGCACGCCTTACAGACACGCTAATCC II struct. : Yes
Right end : TTCATCGTCCATCGTCGTGGATGCAAGTCGCGTCACAGAAACAGGAAGCCCCGTCCTCAAGGAAGCCGCGTCAGCGGCTGAGTAGGGCGGGGTAGTTCAC II struct. : Yes
Insertion site
Left flank | LE cleavage site | Right flank | RE cleavage site |
---|---|---|---|
GCAGACTGGGTG | TTAG | TTGCTGTTCGCC | tcac |
DNA sequence
CTGAAAGAGAGGGCGCTAAGCCCCCTTCCTCAAGGAGCGACCGAAGGGAGCGAGTAGGGAGGGGATACAGCGCCCGCACGCCTTACAGACACGCTAATCC
GTGCGATTAATACACCGCACTTCGTACGAGTTGACACGTCGCATGAATTACAGCCCACGCTTCCGTTTGTTCCCCACCACGGAGCAACGCGAAGCGATGG
ACTGGCAACGAAACACCGTGCGACAACTGTACAACCACGCTCTCAACGAGTTTGACCAGATACCCGAAGACGCGGGCACGCTCCGCCAGCGCGTCTGGAT
GGTCCGAGACACGCTCCCGGCGCTCAAAGGCTGGTGGACCGACCTCAAACTGGTCTACTCGACCGTTCTCCAGAAAGCTGTCGAGCGTATCCGAGACAAC
ATCCAGAACCTCGGGAAGCTCAAAGCGAAAGGATACGACGTGGGGTCGTTGAACTGGAAGAAACCGCGTGAGTACCGGAGTTTCACGTACCGGCAATCGG
GCTTCGAACTCGACAAGAAGAGTGGCCCGAATGGTCGCGGACTCCTCATCCTCAAGAAACTCAAAGGCGAAACCCGCGAGATTCCAATTCGCATCCATCG
TGACCTTCCAGACCACGAGAAAGTCAAAGAAGTCACGCTCAAAAAAGAACCCACGGGAGCGTGGTACGTATCATTCTGCATCGAAACAGAAACTCCCGAG
AAACCTGCCGTCGAAGCCATCGGCTCTGACGATGCGGTGGGTCTCGACCTCGGTGTTCTCAACTTCGCCCACGATTCGGACGGGCGTTCGATAGGGCGAC
TCGACTTGTCTAACGACCGAGAACGCCTCGAACGAGAGCAACGTTCGCTCTCTCGAAAGGACTACGAGTCCAACAATTGGGAGAGACAACGGCGTCGCGT
CGCGGAAATCCATGCACGAATGTCGAACAAGAAGCGTGATTTCAAACACAAGCTAGCACACTTCTACACCACTGAGTACGATGCCGTATTCGTTGAAGAC
CTCAATGTCAAGGGGATGCTCGAATCCCCGCAAAACGCTCGTAACAAGGCCGAAGTCGGCTGGCGAGACTTCATCACCATCCTCGAACACCACGGTGAGA
AGAACGGCTGTCACGTCGTGCAGGTTAACCCGCGCGGGACGACCACAGAGTGTGCGAGCTGTGGCGTTTCGACTGGCAAGCCGTTGTGGGTGCGCGAGCA
TTCGTGCCCGTCGTGTGGGTTCGAACTCGATAGGGATTGGAATGCGGCTCTTAACGTCCTCTCACGAGGACTCGACAAACTAGGAGTGGTTCACTCCGAA
GACACGCCTGTGGAGACTGCGACCGCTGTGTCCACTGATGGTGGTGATTCATCGTCCATCGTCGTGGATGCAAGTCGCGTCACAGAAACAGGAAGCCCCG
TCCTCAAGGAAGCCGCGTCAGCGGCTGAGTAGGGCGGGGTAGTTCAC
GTGCGATTAATACACCGCACTTCGTACGAGTTGACACGTCGCATGAATTACAGCCCACGCTTCCGTTTGTTCCCCACCACGGAGCAACGCGAAGCGATGG
ACTGGCAACGAAACACCGTGCGACAACTGTACAACCACGCTCTCAACGAGTTTGACCAGATACCCGAAGACGCGGGCACGCTCCGCCAGCGCGTCTGGAT
GGTCCGAGACACGCTCCCGGCGCTCAAAGGCTGGTGGACCGACCTCAAACTGGTCTACTCGACCGTTCTCCAGAAAGCTGTCGAGCGTATCCGAGACAAC
ATCCAGAACCTCGGGAAGCTCAAAGCGAAAGGATACGACGTGGGGTCGTTGAACTGGAAGAAACCGCGTGAGTACCGGAGTTTCACGTACCGGCAATCGG
GCTTCGAACTCGACAAGAAGAGTGGCCCGAATGGTCGCGGACTCCTCATCCTCAAGAAACTCAAAGGCGAAACCCGCGAGATTCCAATTCGCATCCATCG
TGACCTTCCAGACCACGAGAAAGTCAAAGAAGTCACGCTCAAAAAAGAACCCACGGGAGCGTGGTACGTATCATTCTGCATCGAAACAGAAACTCCCGAG
AAACCTGCCGTCGAAGCCATCGGCTCTGACGATGCGGTGGGTCTCGACCTCGGTGTTCTCAACTTCGCCCACGATTCGGACGGGCGTTCGATAGGGCGAC
TCGACTTGTCTAACGACCGAGAACGCCTCGAACGAGAGCAACGTTCGCTCTCTCGAAAGGACTACGAGTCCAACAATTGGGAGAGACAACGGCGTCGCGT
CGCGGAAATCCATGCACGAATGTCGAACAAGAAGCGTGATTTCAAACACAAGCTAGCACACTTCTACACCACTGAGTACGATGCCGTATTCGTTGAAGAC
CTCAATGTCAAGGGGATGCTCGAATCCCCGCAAAACGCTCGTAACAAGGCCGAAGTCGGCTGGCGAGACTTCATCACCATCCTCGAACACCACGGTGAGA
AGAACGGCTGTCACGTCGTGCAGGTTAACCCGCGCGGGACGACCACAGAGTGTGCGAGCTGTGGCGTTTCGACTGGCAAGCCGTTGTGGGTGCGCGAGCA
TTCGTGCCCGTCGTGTGGGTTCGAACTCGATAGGGATTGGAATGCGGCTCTTAACGTCCTCTCACGAGGACTCGACAAACTAGGAGTGGTTCACTCCGAA
GACACGCCTGTGGAGACTGCGACCGCTGTGTCCACTGATGGTGGTGATTCATCGTCCATCGTCGTGGATGCAAGTCGCGTCACAGAAACAGGAAGCCCCG
TCCTCAAGGAAGCCGCGTCAGCGGCTGAGTAGGGCGGGGTAGTTCAC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1290 bp | 429 aa | 143 | 1432 | + | No |
AG : TnpB
ORF sequence :
MNYSPRFRLFPTTEQREAMDWQRNTVRQLYNHALNEFDQIPEDAGTLRQRVWMVRDTLPALKGWWTDLKLVYSTVLQKAVERIRDNIQNLGKLKAKGYDV
GSLNWKKPREYRSFTYRQSGFELDKKSGPNGRGLLILKKLKGETREIPIRIHRDLPDHEKVKEVTLKKEPTGAWYVSFCIETETPEKPAVEAIGSDDAVG
LDLGVLNFAHDSDGRSIGRLDLSNDRERLEREQRSLSRKDYESNNWERQRRRVAEIHARMSNKKRDFKHKLAHFYTTEYDAVFVEDLNVKGMLESPQNAR
NKAEVGWRDFITILEHHGEKNGCHVVQVNPRGTTTECASCGVSTGKPLWVREHSCPSCGFELDRDWNAALNVLSRGLDKLGVVHSEDTPVETATAVSTDG
GDSSSIVVDASRVTETGSPVLKEAASAAE
GSLNWKKPREYRSFTYRQSGFELDKKSGPNGRGLLILKKLKGETREIPIRIHRDLPDHEKVKEVTLKKEPTGAWYVSFCIETETPEKPAVEAIGSDDAVG
LDLGVLNFAHDSDGRSIGRLDLSNDRERLEREQRSLSRKDYESNNWERQRRRVAEIHARMSNKKRDFKHKLAHFYTTEYDAVFVEDLNVKGMLESPQNAR
NKAEVGWRDFITILEHHGEKNGCHVVQVNPRGTTTECASCGVSTGKPLWVREHSCPSCGFELDRDWNAALNVLSRGLDKLGVVHSEDTPVETATAVSTDG
GDSSSIVVDASRVTETGSPVLKEAASAAE
Blast result :
Comments
ISHal2 is 89% (TnpB) aa similar to ISHarch10.
References
1] Friedhelm Pfeiffer (2015) Direct submission.
2] Khelaifia,S., Croce,O., Lagier,J.C. and Raoult,D. (2014) Direct submission GenBank.
2] Khelaifia,S., Croce,O., Lagier,J.C. and Raoult,D. (2014) Direct submission GenBank.