ISHal2

  • Family IS200/IS605
  • Group IS1341
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
CCDK010000001 ND Haloferax alexandrinus
Haloferax alexandrinus Arc-Hr
DNA section
IS Length : 1447 bp

Ends


Left end : CTGAAAGAGAGGGCGCTAAGCCCCCTTCCTCAAGGAGCGACCGAAGGGAGCGAGTAGGGAGGGGATACAGCGCCCGCACGCCTTACAGACACGCTAATCC II struct. : Yes
Right end : TTCATCGTCCATCGTCGTGGATGCAAGTCGCGTCACAGAAACAGGAAGCCCCGTCCTCAAGGAAGCCGCGTCAGCGGCTGAGTAGGGCGGGGTAGTTCAC II struct. : Yes

Insertion site


Left flankLE cleavage siteRight flankRE cleavage site
GCAGACTGGGTGTTAGTTGCTGTTCGCCtcac

DNA sequence

CTGAAAGAGAGGGCGCTAAGCCCCCTTCCTCAAGGAGCGACCGAAGGGAGCGAGTAGGGAGGGGATACAGCGCCCGCACGCCTTACAGACACGCTAATCC
GTGCGATTAATACACCGCACTTCGTACGAGTTGACACGTCGCATGAATTACAGCCCACGCTTCCGTTTGTTCCCCACCACGGAGCAACGCGAAGCGATGG
ACTGGCAACGAAACACCGTGCGACAACTGTACAACCACGCTCTCAACGAGTTTGACCAGATACCCGAAGACGCGGGCACGCTCCGCCAGCGCGTCTGGAT
GGTCCGAGACACGCTCCCGGCGCTCAAAGGCTGGTGGACCGACCTCAAACTGGTCTACTCGACCGTTCTCCAGAAAGCTGTCGAGCGTATCCGAGACAAC
ATCCAGAACCTCGGGAAGCTCAAAGCGAAAGGATACGACGTGGGGTCGTTGAACTGGAAGAAACCGCGTGAGTACCGGAGTTTCACGTACCGGCAATCGG
GCTTCGAACTCGACAAGAAGAGTGGCCCGAATGGTCGCGGACTCCTCATCCTCAAGAAACTCAAAGGCGAAACCCGCGAGATTCCAATTCGCATCCATCG
TGACCTTCCAGACCACGAGAAAGTCAAAGAAGTCACGCTCAAAAAAGAACCCACGGGAGCGTGGTACGTATCATTCTGCATCGAAACAGAAACTCCCGAG
AAACCTGCCGTCGAAGCCATCGGCTCTGACGATGCGGTGGGTCTCGACCTCGGTGTTCTCAACTTCGCCCACGATTCGGACGGGCGTTCGATAGGGCGAC
TCGACTTGTCTAACGACCGAGAACGCCTCGAACGAGAGCAACGTTCGCTCTCTCGAAAGGACTACGAGTCCAACAATTGGGAGAGACAACGGCGTCGCGT
CGCGGAAATCCATGCACGAATGTCGAACAAGAAGCGTGATTTCAAACACAAGCTAGCACACTTCTACACCACTGAGTACGATGCCGTATTCGTTGAAGAC
CTCAATGTCAAGGGGATGCTCGAATCCCCGCAAAACGCTCGTAACAAGGCCGAAGTCGGCTGGCGAGACTTCATCACCATCCTCGAACACCACGGTGAGA
AGAACGGCTGTCACGTCGTGCAGGTTAACCCGCGCGGGACGACCACAGAGTGTGCGAGCTGTGGCGTTTCGACTGGCAAGCCGTTGTGGGTGCGCGAGCA
TTCGTGCCCGTCGTGTGGGTTCGAACTCGATAGGGATTGGAATGCGGCTCTTAACGTCCTCTCACGAGGACTCGACAAACTAGGAGTGGTTCACTCCGAA
GACACGCCTGTGGAGACTGCGACCGCTGTGTCCACTGATGGTGGTGATTCATCGTCCATCGTCGTGGATGCAAGTCGCGTCACAGAAACAGGAAGCCCCG
TCCTCAAGGAAGCCGCGTCAGCGGCTGAGTAGGGCGGGGTAGTTCAC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1290 bp429 aa1431432+No
ORF function : Accessory Gene
AG : TnpB

ORF sequence :

MNYSPRFRLFPTTEQREAMDWQRNTVRQLYNHALNEFDQIPEDAGTLRQRVWMVRDTLPALKGWWTDLKLVYSTVLQKAVERIRDNIQNLGKLKAKGYDV
GSLNWKKPREYRSFTYRQSGFELDKKSGPNGRGLLILKKLKGETREIPIRIHRDLPDHEKVKEVTLKKEPTGAWYVSFCIETETPEKPAVEAIGSDDAVG
LDLGVLNFAHDSDGRSIGRLDLSNDRERLEREQRSLSRKDYESNNWERQRRRVAEIHARMSNKKRDFKHKLAHFYTTEYDAVFVEDLNVKGMLESPQNAR
NKAEVGWRDFITILEHHGEKNGCHVVQVNPRGTTTECASCGVSTGKPLWVREHSCPSCGFELDRDWNAALNVLSRGLDKLGVVHSEDTPVETATAVSTDG
GDSSSIVVDASRVTETGSPVLKEAASAAE

 

Blast result :
Comments
ISHal2 is 89% (TnpB) aa similar to ISHarch10.
References
1] Friedhelm Pfeiffer (2015) Direct submission.
2] Khelaifia,S., Croce,O., Lagier,J.C. and Raoult,D. (2014) Direct submission GenBank.