ISHwa19
- Family IS200/IS605
- Group IS1341
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
AM180088 | ND | Haloquadratum walsbyi | Haloquadratum walsbyi DSM 16790 |
DNA section
IS Length : 1482 bp
Ends
Left end : CAGGCGGTCAAGGCGACTGCCCCGGGGCTTGACCCCGGGGTTGAAGCCGACAACACCCAACCTTTATTACGATTGAGTATGAATAAATAACAATGAGTTC II struct. : Yes
Right end : AGACTGCGCTCCCTACGTTTACCCCTCGCAGTGAGGCGGTAGATGCAAAGCGCGTCGTTGAAGCAGGAAGCCCCGGGGCTTGACCCCGGGGTGAGTTCAC II struct. : Yes
Insertion site
Left flank | LE cleavage site | Right flank | RE cleavage site |
---|---|---|---|
GCATTCTCCT | TGTA | CTCTGTAAAT | tcac |
DNA sequence
CAGGCGGTCAAGGCGACTGCCCCGGGGCTTGACCCCGGGGTTGAAGCCGACAACACCCAACCTTTATTACGATTGAGTATGAATAAATAACAATGAGTTC
GATGGAGTGCTACCCAAAACTCAGAGAACGCGGGCAAGTTACAATCCCAGAAGAAGTCCGAGACGGGCTTAATCTGGAAGAAGGCGACCAGTTGAAACTC
ACTGTCGAAAAACTCGACTAACACCGATGAAACACACGCTTCGCTTCCGTGCGTACCTGTCCGACGACGTGGCAAGCGAAGCGTGGCGGCACATCGACAT
TCTCCGCCAGATTCGTAATCACGCTGTCCGGGGCTACTACAACTCGGACTACAACGATAAGCCATCTGACTACGACCAACACAGCAAACTCAAAGACTGG
ACAGACCAGTGGCCGACCTTTGCCGACCCGTCACAACACGCCGCACAACAGGCTATCAGCCAGATTCACAGCGACCTTGAGACGCTGAAAGAACGCCGAA
ACGAAGGCTACGATGTTGGGCGGTTGCAGTGGCAAGGCAACGGCGAATTTCGGTCGGTGTCGTACAATCAATCCCGTCGCTGGAACGTGGATTACAACGC
GGGCGACGACCGATTCGTGCGACTCCGACTCGAAAAGATTGGCTGGTTCAACATCCGTGCAGACCGCGACGTACCACCAGCAGAGAATATTGACGAGGTT
ATCCTGAAAAAAGAGACGACTGGCGAATGGTACGTCTCACTCGTCACCACTGTCGAAGACACACCCGAGAAACCACCACTCAGTGAGATTGAACCCGAAG
ATTGTGTGGGCGTTGACCTTGGTATCACGAGCTACATCCACACTTCGGAGAACCTGTCCGTTGATACACTCGACCTGTCCGAGGAGTACGACCGCTACGC
ACGCGAACAGCGGAAACTCGACCGGAAAGAACACGGTTCCGCTAACTGGGAGAAACAACGCCGCAAGGTGGCCCAAGCGAAACGAACAATTAAGCGGAAG
GTGCGAGACTACCAGCACAAACTCACGACGTGGCTAGTCACAGAGTACGATGTTGTGGCCGTGGAAGACTTGGATGTGAAACCGATGATGGAAACCAGCC
AGAACGCGAAGAACAAGCAGGATGCCGCGTGGTCACGGTTTATCGAGCTACTGGAGTACAAGGCTGACCTGCACGGTACGCACGTTGAGAAGGTGAAGCC
GGAAGGGACGACCAAAGAGTGCGCTGTGTGTGGTGTTGAGACAGCTAAGCCAATCTGGGTACGCGAACACTCCTGTCCAGCGTGCGGCCATACGGAAGAC
CGCGACCTCAACGCGGCGAAGAATATTCTCTATCGCGGACTCACGCAGTTAGGGGCGGGACGCTCCGAATCAACGCCTGTGCAGACTGCGCTCCCTACGT
TTACCCCTCGCAGTGAGGCGGTAGATGCAAAGCGCGTCGTTGAAGCAGGAAGCCCCGGGGCTTGACCCCGGGGTGAGTTCAC
GATGGAGTGCTACCCAAAACTCAGAGAACGCGGGCAAGTTACAATCCCAGAAGAAGTCCGAGACGGGCTTAATCTGGAAGAAGGCGACCAGTTGAAACTC
ACTGTCGAAAAACTCGACTAACACCGATGAAACACACGCTTCGCTTCCGTGCGTACCTGTCCGACGACGTGGCAAGCGAAGCGTGGCGGCACATCGACAT
TCTCCGCCAGATTCGTAATCACGCTGTCCGGGGCTACTACAACTCGGACTACAACGATAAGCCATCTGACTACGACCAACACAGCAAACTCAAAGACTGG
ACAGACCAGTGGCCGACCTTTGCCGACCCGTCACAACACGCCGCACAACAGGCTATCAGCCAGATTCACAGCGACCTTGAGACGCTGAAAGAACGCCGAA
ACGAAGGCTACGATGTTGGGCGGTTGCAGTGGCAAGGCAACGGCGAATTTCGGTCGGTGTCGTACAATCAATCCCGTCGCTGGAACGTGGATTACAACGC
GGGCGACGACCGATTCGTGCGACTCCGACTCGAAAAGATTGGCTGGTTCAACATCCGTGCAGACCGCGACGTACCACCAGCAGAGAATATTGACGAGGTT
ATCCTGAAAAAAGAGACGACTGGCGAATGGTACGTCTCACTCGTCACCACTGTCGAAGACACACCCGAGAAACCACCACTCAGTGAGATTGAACCCGAAG
ATTGTGTGGGCGTTGACCTTGGTATCACGAGCTACATCCACACTTCGGAGAACCTGTCCGTTGATACACTCGACCTGTCCGAGGAGTACGACCGCTACGC
ACGCGAACAGCGGAAACTCGACCGGAAAGAACACGGTTCCGCTAACTGGGAGAAACAACGCCGCAAGGTGGCCCAAGCGAAACGAACAATTAAGCGGAAG
GTGCGAGACTACCAGCACAAACTCACGACGTGGCTAGTCACAGAGTACGATGTTGTGGCCGTGGAAGACTTGGATGTGAAACCGATGATGGAAACCAGCC
AGAACGCGAAGAACAAGCAGGATGCCGCGTGGTCACGGTTTATCGAGCTACTGGAGTACAAGGCTGACCTGCACGGTACGCACGTTGAGAAGGTGAAGCC
GGAAGGGACGACCAAAGAGTGCGCTGTGTGTGGTGTTGAGACAGCTAAGCCAATCTGGGTACGCGAACACTCCTGTCCAGCGTGCGGCCATACGGAAGAC
CGCGACCTCAACGCGGCGAAGAATATTCTCTATCGCGGACTCACGCAGTTAGGGGCGGGACGCTCCGAATCAACGCCTGTGCAGACTGCGCTCCCTACGT
TTACCCCTCGCAGTGAGGCGGTAGATGCAAAGCGCGTCGTTGAAGCAGGAAGCCCCGGGGCTTGACCCCGGGGTGAGTTCAC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1239 bp | 412 aa | 227 | 1465 | + | No |
AG : TnpB
ORF sequence :
MKHTLRFRAYLSDDVASEAWRHIDILRQIRNHAVRGYYNSDYNDKPSDYDQHSKLKDWTDQWPTFADPSQHAAQQAISQIHSDLETLKERRNEGYDVGRL
QWQGNGEFRSVSYNQSRRWNVDYNAGDDRFVRLRLEKIGWFNIRADRDVPPAENIDEVILKKETTGEWYVSLVTTVEDTPEKPPLSEIEPEDCVGVDLGI
TSYIHTSENLSVDTLDLSEEYDRYAREQRKLDRKEHGSANWEKQRRKVAQAKRTIKRKVRDYQHKLTTWLVTEYDVVAVEDLDVKPMMETSQNAKNKQDA
AWSRFIELLEYKADLHGTHVEKVKPEGTTKECAVCGVETAKPIWVREHSCPACGHTEDRDLNAAKNILYRGLTQLGAGRSESTPVQTALPTFTPRSEAVD
AKRVVEAGSPGA
QWQGNGEFRSVSYNQSRRWNVDYNAGDDRFVRLRLEKIGWFNIRADRDVPPAENIDEVILKKETTGEWYVSLVTTVEDTPEKPPLSEIEPEDCVGVDLGI
TSYIHTSENLSVDTLDLSEEYDRYAREQRKLDRKEHGSANWEKQRRKVAQAKRTIKRKVRDYQHKLTTWLVTEYDVVAVEDLDVKPMMETSQNAKNKQDA
AWSRFIELLEYKADLHGTHVEKVKPEGTTKECAVCGVETAKPIWVREHSCPACGHTEDRDLNAAKNILYRGLTQLGAGRSESTPVQTALPTFTPRSEAVD
AKRVVEAGSPGA
Blast result :
Comments
ISHwa19 is 95% aa similar to ISNph15.
References
1] Bolhuis, H., Palm, P., Wende, A., Falb, M., Rampp, M., Rodriguez-Valera, F., Pfeiffer, F., and Oesterhelt, D. (2006) BMC Genomics 7, 169
2] Dyall-Smith,M.L., Pfeiffer,F., Klee,K., Palm,P., Gross,K., Schuster,S.C., Rampp, M., and Oesterhelt,D. (2011) PLoS One 6: e20968
2] Dyall-Smith,M.L., Pfeiffer,F., Klee,K., Palm,P., Gross,K., Schuster,S.C., Rampp, M., and Oesterhelt,D. (2011) PLoS One 6: e20968