ISHarch7
- Family IS1595
- Group ISH4
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
CP002988 | ND | Halophilic archaeon | Halophilic archaeon DL31 |
DNA section
IS Length : 945 bp
Ends
IR Length : 20/24
IRL : CGCTCTTCTCGATAGATCGTAACATCAATTCTGCTGGCGAACCAAGCGTC
IRR : CGCTCATCCCGATACATTGTAACACAGGAGTTTCTCAAACCACTCGGTCG
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
ATTAGTATTA | CGTCGGGAAC | 0 |
DNA sequence
CGCTCTTCTCGATAGATCGTAACATCAATTCTGCTGGCGAACCAAGCGTCGGGTAACGATGGACGAGCAGTCAGCGCAGGTCTTCCTCCCACCGCGTGAG
CGATGCTTTGAGCGTCTCCGTCTCGCCCGGTTCGGCGAGACGGTGACGTGTGTCCATTGCGAGAGTAACGACGTTGTCAAGCGGGGGACGACCGACAAAG
ACGCTCAACAGTACTGGTGCAAGAACTGCGAGACGTACTTTAACGACCTTACCGAGACGATCTTCGGTCAACATCGCTTCAGCCTCGAAGAAATGTTCTA
CATCGTCAAGGAGATGCGATCTGAGCCGACCGCTCAGATCGCTCGTGATCTTGATCGGGACTACGAAGCGGTTCTCAATTTTGTCCACAAAGTACAGGAC
GTGAGTGGTAAATCGACGAGTTTGACCTCTACGACGTGTGTGAAGCCGACGAGGTCTACGTAACTGCTGGTGAGAAGGGAATCGAAGATGAAGATGAGAG
TCCGCGCGAGCGTGGACTCAAAAAAAAGGGACGCGGAGACTTCGACTCGGACAAACCGCCAGTCCTGACATTCGTCCGTCGGGATGACGGACGAGTTCTG
TTTCTCGTGTGTAAGGATCTCCAAGACGGTGATGAAGACATCGCGGAGTACGGTGACGGAAGCGTCATCCTCTGCACCGACGGCTACACGATCTACAACG
ACATCGAGAACGAGGAGGGGGTGGACGGCCATCTGGCCATCACCCACTCCGACACCTACGTCATCGGTGACGCCCACACAAACATCTGCGAGAACCGCCA
CAGCTTCCTTCGCCAGTGGCTGGCGAAGTTCCGTGGCGTCTCGAAGCATCATCTCCAGAAATACCTTGACTTCCTTGCGCTGAAACTCAACTCACCGACC
GAGTGGTTTGAGAAACTCCTGTGTTACAATGTATCGGGATGAGCG
CGATGCTTTGAGCGTCTCCGTCTCGCCCGGTTCGGCGAGACGGTGACGTGTGTCCATTGCGAGAGTAACGACGTTGTCAAGCGGGGGACGACCGACAAAG
ACGCTCAACAGTACTGGTGCAAGAACTGCGAGACGTACTTTAACGACCTTACCGAGACGATCTTCGGTCAACATCGCTTCAGCCTCGAAGAAATGTTCTA
CATCGTCAAGGAGATGCGATCTGAGCCGACCGCTCAGATCGCTCGTGATCTTGATCGGGACTACGAAGCGGTTCTCAATTTTGTCCACAAAGTACAGGAC
GTGAGTGGTAAATCGACGAGTTTGACCTCTACGACGTGTGTGAAGCCGACGAGGTCTACGTAACTGCTGGTGAGAAGGGAATCGAAGATGAAGATGAGAG
TCCGCGCGAGCGTGGACTCAAAAAAAAGGGACGCGGAGACTTCGACTCGGACAAACCGCCAGTCCTGACATTCGTCCGTCGGGATGACGGACGAGTTCTG
TTTCTCGTGTGTAAGGATCTCCAAGACGGTGATGAAGACATCGCGGAGTACGGTGACGGAAGCGTCATCCTCTGCACCGACGGCTACACGATCTACAACG
ACATCGAGAACGAGGAGGGGGTGGACGGCCATCTGGCCATCACCCACTCCGACACCTACGTCATCGGTGACGCCCACACAAACATCTGCGAGAACCGCCA
CAGCTTCCTTCGCCAGTGGCTGGCGAAGTTCCGTGGCGTCTCGAAGCATCATCTCCAGAAATACCTTGACTTCCTTGCGCTGAAACTCAACTCACCGACC
GAGTGGTTTGAGAAACTCCTGTGTTACAATGTATCGGGATGAGCG
Recoding section
- Recoding by frameshift
- Frame
- Type
- Experimentally demonstrated
Stimulators :
- Shine-Dalgarno sequence :
- Secondary structure :
Recoding motif :
Protein section
ORF number : 3
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
405 bp | 134 aa | 59 | 463 | + | No |
Description : First part of the transposase
ORF sequence :
MDEQSAQVFLPPRERCFERLRLARFGETVTCVHCESNDVVKRGTTDKDAQQYWCKNCETYFNDLTETIFGQHRFSLEEMFYIVKEMRSEPTAQIARDLDR
DYEAVLNFVHKVQDVSGKSTSLTSTTCVKPTRST
DYEAVLNFVHKVQDVSGKSTSLTSTTCVKPTRST
Blast result :ORF 2
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
531 bp | 176 aa | 412 | 942 | + | No |
Description : Second part of the transposase
ORF sequence :
IDEFDLYDVCEADEVYVTAGEKGIEDEDESPRERGLKKKGRGDFDSDKPPVLTFVRRDDGRVLFLVCKDLQDGDEDIAEYGDGSVILCTDGYTIYNDIEN
EEGVDGHLAITHSDTYVIGDAHTNICENRHSFLRQWLAKFRGVSKHHLQKYLDFLALKLNSPTEWFEKLLCYNVSG
EEGVDGHLAITHSDTYVIGDAHTNICENRHSFLRQWLAKFRGVSKHHLQKYLDFLALKLNSPTEWFEKLLCYNVSG
Blast result :ORF 3
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
884 bp | 294 aa | 59 | 942 | + | Yes |
Chemistry : DDE
ORF sequence :
MDEQSAQVFLPPRERCFERLRLARFGETVTCVHCESNDVVKRGTTDKDAQQYWCKNCETYFNDLTETIFGQHRFSLEEMFYIVKEMRSEPTAQIARDLDR
DYEAVLNFVHKVQDVSGKIDEFDLYDVCEADEVYVTAGEKGIEDEDESPRERGLKKKGRGDFDSDKPPVLTFVRRDDGRVLFLVCKDLQDGDEDIAEYGD
GSVILCTDGYTIYNDIENEEGVDGHLAITHSDTYVIGDAHTNICENRHSFLRQWLAKFRGVSKHHLQKYLDFLALKLNSPTEWFEKLLCYNVSG
DYEAVLNFVHKVQDVSGKIDEFDLYDVCEADEVYVTAGEKGIEDEDESPRERGLKKKGRGDFDSDKPPVLTFVRRDDGRVLFLVCKDLQDGDEDIAEYGD
GSVILCTDGYTIYNDIENEEGVDGHLAITHSDTYVIGDAHTNICENRHSFLRQWLAKFRGVSKHHLQKYLDFLALKLNSPTEWFEKLLCYNVSG
Blast result :
Comments
ISHarch7 is 50% aa similar to ISNagr10.
The third ORF is a putative ORFAB transposase reconstructed in silico by possible -1 frameshift.
The third ORF is a putative ORFAB transposase reconstructed in silico by possible -1 frameshift.
References
1] Pfeiffer F. (2015 Direct submission
2] Lucas,S., Han,J., Lapidus,A., Cheng,J.-F., Goodwin,L., Pitluck,S., Peters,L., Mikhailova,N., Teshima,H., Detter,J.C., Han,C., Tapia,R., Land,M., Hauser,L., Kyrpides,N., Ivanova,N., Pagani,I., Dyall-Smith,M., Cavicchioli,R. and Woyke,T. (2011) Direct submission to GenBank
2] Lucas,S., Han,J., Lapidus,A., Cheng,J.-F., Goodwin,L., Pitluck,S., Peters,L., Mikhailova,N., Teshima,H., Detter,J.C., Han,C., Tapia,R., Land,M., Hauser,L., Kyrpides,N., Ivanova,N., Pagani,I., Dyall-Smith,M., Cavicchioli,R. and Woyke,T. (2011) Direct submission to GenBank