ISNph29
- Family IS200/IS605
- Group IS1341
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
CR936257 | ND | Natronomonas pharaonis | Natronomonas pharaonis DSM 2160 |
DNA section
IS Length : 1558 bp
Ends
Left end : CTTGATTCAGCGAGGGAATCCCGGCGTTTACGCCGGGAGGGAATCGCGTAAGCTCCGGGCGACAACCGCCGGGACTGACGCCTGATTGAATACCAGACGT II struct. : Yes
Right end : CAGATGACGCTCGGTGAGGTCGGGTCGAAACCCACTGCCAGTAATTAGCTGGTATTCCCACGCAGGGAAGCCGCGCCGTTCACGGCGCGGAGGATGTCAC II struct. : Yes
Insertion site
Left flank | LE cleavage site | Right flank | RE cleavage site |
---|---|---|---|
CCGCGGCGGCGG | CCAT | TAGCAAAAAGAA | tcac |
DNA sequence
CTTGATTCAGCGAGGGAATCCCGGCGTTTACGCCGGGAGGGAATCGCGTAAGCTCCGGGCGACAACCGCCGGGACTGACGCCTGATTGAATACCAGACGT
AAGAGTTTAGTTACATGGATGCTTACATAGCTCTGTGCGAACCGACGTAGACATGGAGCGGGATGGCGACCTCCACGAACGGGTTAAAGAGTATGCCCGT
GAGAACGGTATCCGCCACCCGCGAGCATACCGCGAGCTAATCGAAAAGGGATTAGAAGCCACTGATGCCGACTAAGACGCTCGAAGCGACACTCGCGCCG
CCGACAGCTCACAAAGAGCGAAAGCTACAGCAACTCCACGACCTGTATCACGAGGGGCTGCACGAAGCGTTCGAGGCTGGCGCTGATACGCAGTCGGCAG
TCAACGACATTGTGACGCCCTACGACCTGCCGTATCAGGTCAAAGACGCACTCAAAAACTACGTGCCGTCGTTGGACGATGCACAGGAATTGAGTGACGA
CCACCCGACACGGATGGTCAACCGTGCCGCCAGCTTCGACTACTCAGAGGAGCGAACACACAGTTACGTGTGGGAAGTCCCGCAACCCGGACGTGGGACG
AATTTCTGGGTACCGCTTCGCATCAATCCTGAACAGGAGCAACTGTGGGCCGACCTACTGGACGGGAACGTGTCGCCCGGTCAACTCCAACTGATACAGA
ATCGCACATCATGGAAGCTACACGTCGCCGTCGAGTATTCCGTCGAGGACGCCGACTACGATACCGACAGCGACGACGTGACGCACATCGGTCTGGACAT
TGGTGAATCGTCGCTTATCATGGGCTGTGCCCTCAGAGACGGTTCACCGACCCGCCCGCTTGTGTGTGACGGGAGCCGTGCGAAGCATCTCCGCAAAGAG
ATGCACACCACCCTCAAACGCCTGCAAGAGCGTGACGCCGCCGAGTGGCGCATAGACGAGCGATTCGACCACTACCAGAACGCCCTCACGGATATTGTCG
AGAAGGCGTCTCGGCAGGCTGTCGAGTACGCCCGTGGATTCGAGAAGCCGGTGCTGGTGATGGAGGATCTGACGTACATCCGCGAATCGTTGGACTGCGG
CAAATTCATGAACCGGCGACTCCACGCATGGGCGTTCGCTCGGTTACAGGACCGAATTGAGGACAAAGCGCGAGCCGCTGGTATCCCGGTCGAATACGTG
AACGCCGCATACACCTCGCAAACGTGCCACGAGTGCGGTCACATCGGCTATCGAGACAGTGGCGGAGCGTTCCACTGTACGAACGACGGGTGCCACATCA
CGACGTTTGAGGGTGATATAAACGGCGCTATCAATATCGCACAGCGGGCAGACCCGTGGGGAGAGAGCGTGCCGCTGAAACCGGCAGGCAATGACTCGCC
TCGGGATGGGAGTGCCTGTGACAGCACCACGACCCACACCGAACAGAGCCAATCAGAGCAGATGACGCTCGGTGAGGTCGGGTCGAAACCCACTGCCAGT
AATTAGCTGGTATTCCCACGCAGGGAAGCCGCGCCGTTCACGGCGCGGAGGATGTCAC
AAGAGTTTAGTTACATGGATGCTTACATAGCTCTGTGCGAACCGACGTAGACATGGAGCGGGATGGCGACCTCCACGAACGGGTTAAAGAGTATGCCCGT
GAGAACGGTATCCGCCACCCGCGAGCATACCGCGAGCTAATCGAAAAGGGATTAGAAGCCACTGATGCCGACTAAGACGCTCGAAGCGACACTCGCGCCG
CCGACAGCTCACAAAGAGCGAAAGCTACAGCAACTCCACGACCTGTATCACGAGGGGCTGCACGAAGCGTTCGAGGCTGGCGCTGATACGCAGTCGGCAG
TCAACGACATTGTGACGCCCTACGACCTGCCGTATCAGGTCAAAGACGCACTCAAAAACTACGTGCCGTCGTTGGACGATGCACAGGAATTGAGTGACGA
CCACCCGACACGGATGGTCAACCGTGCCGCCAGCTTCGACTACTCAGAGGAGCGAACACACAGTTACGTGTGGGAAGTCCCGCAACCCGGACGTGGGACG
AATTTCTGGGTACCGCTTCGCATCAATCCTGAACAGGAGCAACTGTGGGCCGACCTACTGGACGGGAACGTGTCGCCCGGTCAACTCCAACTGATACAGA
ATCGCACATCATGGAAGCTACACGTCGCCGTCGAGTATTCCGTCGAGGACGCCGACTACGATACCGACAGCGACGACGTGACGCACATCGGTCTGGACAT
TGGTGAATCGTCGCTTATCATGGGCTGTGCCCTCAGAGACGGTTCACCGACCCGCCCGCTTGTGTGTGACGGGAGCCGTGCGAAGCATCTCCGCAAAGAG
ATGCACACCACCCTCAAACGCCTGCAAGAGCGTGACGCCGCCGAGTGGCGCATAGACGAGCGATTCGACCACTACCAGAACGCCCTCACGGATATTGTCG
AGAAGGCGTCTCGGCAGGCTGTCGAGTACGCCCGTGGATTCGAGAAGCCGGTGCTGGTGATGGAGGATCTGACGTACATCCGCGAATCGTTGGACTGCGG
CAAATTCATGAACCGGCGACTCCACGCATGGGCGTTCGCTCGGTTACAGGACCGAATTGAGGACAAAGCGCGAGCCGCTGGTATCCCGGTCGAATACGTG
AACGCCGCATACACCTCGCAAACGTGCCACGAGTGCGGTCACATCGGCTATCGAGACAGTGGCGGAGCGTTCCACTGTACGAACGACGGGTGCCACATCA
CGACGTTTGAGGGTGATATAAACGGCGCTATCAATATCGCACAGCGGGCAGACCCGTGGGGAGAGAGCGTGCCGCTGAAACCGGCAGGCAATGACTCGCC
TCGGGATGGGAGTGCCTGTGACAGCACCACGACCCACACCGAACAGAGCCAATCAGAGCAGATGACGCTCGGTGAGGTCGGGTCGAAACCCACTGCCAGT
AATTAGCTGGTATTCCCACGCAGGGAAGCCGCGCCGTTCACGGCGCGGAGGATGTCAC
Protein section
ORF number : 2
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
218 bp | 46 aa | 58 | 275 | + | No |
Annotation : Hypothetical proteinDescription :
ORF sequence :
MRTDVDMERDGDLHERVKEYARENGIRHPRAYRELIEKGLEATDAD
Blast result :ORF 2
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1242 bp | 413 aa | 265 | 1506 | + | No |
AG : TnpB
ORF sequence :
MPTKTLEATLAPPTAHKERKLQQLHDLYHEGLHEAFEAGADTQSAVNDIVTPYDLPYQVKDALKNYVPSLDDAQELSDDHPTRMVNRAASFDYSEERTHS
YVWEVPQPGRGTNFWVPLRINPEQEQLWADLLDGNVSPGQLQLIQNRTSWKLHVAVEYSVEDADYDTDSDDVTHIGLDIGESSLIMGCALRDGSPTRPLV
CDGSRAKHLRKEMHTTLKRLQERDAAEWRIDERFDHYQNALTDIVEKASRQAVEYARGFEKPVLVMEDLTYIRESLDCGKFMNRRLHAWAFARLQDRIED
KARAAGIPVEYVNAAYTSQTCHECGHIGYRDSGGAFHCTNDGCHITTFEGDINGAINIAQRADPWGESVPLKPAGNDSPRDGSACDSTTTHTEQSQSEQM
TLGEVGSKPTASN
YVWEVPQPGRGTNFWVPLRINPEQEQLWADLLDGNVSPGQLQLIQNRTSWKLHVAVEYSVEDADYDTDSDDVTHIGLDIGESSLIMGCALRDGSPTRPLV
CDGSRAKHLRKEMHTTLKRLQERDAAEWRIDERFDHYQNALTDIVEKASRQAVEYARGFEKPVLVMEDLTYIRESLDCGKFMNRRLHAWAFARLQDRIED
KARAAGIPVEYVNAAYTSQTCHECGHIGYRDSGGAFHCTNDGCHITTFEGDINGAINIAQRADPWGESVPLKPAGNDSPRDGSACDSTTTHTEQSQSEQM
TLGEVGSKPTASN
Blast result :
Comments
ISNph29 is 84% (TnpB) aa similar to ISHmu4. The first ORF is a passenger gene annotated as hypothetical protein.
References
1] Pfeiffer F. (2013) Direct submission to ISfinder
2] Falb M., Pfeiffer F., Palm P., Rodewald K., Hickmann V., Tittor J., Oesterhelt D. (2005) Genome Res. 15: 1336-1343
2] Falb M., Pfeiffer F., Palm P., Rodewald K., Hickmann V., Tittor J., Oesterhelt D. (2005) Genome Res. 15: 1336-1343