ISNph29

  • Family IS200/IS605
  • Group IS1341
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
CR936257 ND Natronomonas pharaonis
Natronomonas pharaonis DSM 2160
DNA section
IS Length : 1558 bp

Ends


Left end : CTTGATTCAGCGAGGGAATCCCGGCGTTTACGCCGGGAGGGAATCGCGTAAGCTCCGGGCGACAACCGCCGGGACTGACGCCTGATTGAATACCAGACGT II struct. : Yes
Right end : CAGATGACGCTCGGTGAGGTCGGGTCGAAACCCACTGCCAGTAATTAGCTGGTATTCCCACGCAGGGAAGCCGCGCCGTTCACGGCGCGGAGGATGTCAC II struct. : Yes

Insertion site


Left flankLE cleavage siteRight flankRE cleavage site
CCGCGGCGGCGGCCATTAGCAAAAAGAAtcac

DNA sequence

CTTGATTCAGCGAGGGAATCCCGGCGTTTACGCCGGGAGGGAATCGCGTAAGCTCCGGGCGACAACCGCCGGGACTGACGCCTGATTGAATACCAGACGT
AAGAGTTTAGTTACATGGATGCTTACATAGCTCTGTGCGAACCGACGTAGACATGGAGCGGGATGGCGACCTCCACGAACGGGTTAAAGAGTATGCCCGT
GAGAACGGTATCCGCCACCCGCGAGCATACCGCGAGCTAATCGAAAAGGGATTAGAAGCCACTGATGCCGACTAAGACGCTCGAAGCGACACTCGCGCCG
CCGACAGCTCACAAAGAGCGAAAGCTACAGCAACTCCACGACCTGTATCACGAGGGGCTGCACGAAGCGTTCGAGGCTGGCGCTGATACGCAGTCGGCAG
TCAACGACATTGTGACGCCCTACGACCTGCCGTATCAGGTCAAAGACGCACTCAAAAACTACGTGCCGTCGTTGGACGATGCACAGGAATTGAGTGACGA
CCACCCGACACGGATGGTCAACCGTGCCGCCAGCTTCGACTACTCAGAGGAGCGAACACACAGTTACGTGTGGGAAGTCCCGCAACCCGGACGTGGGACG
AATTTCTGGGTACCGCTTCGCATCAATCCTGAACAGGAGCAACTGTGGGCCGACCTACTGGACGGGAACGTGTCGCCCGGTCAACTCCAACTGATACAGA
ATCGCACATCATGGAAGCTACACGTCGCCGTCGAGTATTCCGTCGAGGACGCCGACTACGATACCGACAGCGACGACGTGACGCACATCGGTCTGGACAT
TGGTGAATCGTCGCTTATCATGGGCTGTGCCCTCAGAGACGGTTCACCGACCCGCCCGCTTGTGTGTGACGGGAGCCGTGCGAAGCATCTCCGCAAAGAG
ATGCACACCACCCTCAAACGCCTGCAAGAGCGTGACGCCGCCGAGTGGCGCATAGACGAGCGATTCGACCACTACCAGAACGCCCTCACGGATATTGTCG
AGAAGGCGTCTCGGCAGGCTGTCGAGTACGCCCGTGGATTCGAGAAGCCGGTGCTGGTGATGGAGGATCTGACGTACATCCGCGAATCGTTGGACTGCGG
CAAATTCATGAACCGGCGACTCCACGCATGGGCGTTCGCTCGGTTACAGGACCGAATTGAGGACAAAGCGCGAGCCGCTGGTATCCCGGTCGAATACGTG
AACGCCGCATACACCTCGCAAACGTGCCACGAGTGCGGTCACATCGGCTATCGAGACAGTGGCGGAGCGTTCCACTGTACGAACGACGGGTGCCACATCA
CGACGTTTGAGGGTGATATAAACGGCGCTATCAATATCGCACAGCGGGCAGACCCGTGGGGAGAGAGCGTGCCGCTGAAACCGGCAGGCAATGACTCGCC
TCGGGATGGGAGTGCCTGTGACAGCACCACGACCCACACCGAACAGAGCCAATCAGAGCAGATGACGCTCGGTGAGGTCGGGTCGAAACCCACTGCCAGT
AATTAGCTGGTATTCCCACGCAGGGAAGCCGCGCCGTTCACGGCGCGGAGGATGTCAC
Protein section
ORF number : 2

 

ORF 1
LengthBeginEndStrandFusion ORF
218 bp46 aa58275+No
ORF function : Passenger Gene
Annotation : Hypothetical proteinDescription :

ORF sequence :

MRTDVDMERDGDLHERVKEYARENGIRHPRAYRELIEKGLEATDAD

 

Blast result :
ORF 2
LengthBeginEndStrandFusion ORF
1242 bp413 aa2651506+No
ORF function : Accessory Gene
AG : TnpB

ORF sequence :

MPTKTLEATLAPPTAHKERKLQQLHDLYHEGLHEAFEAGADTQSAVNDIVTPYDLPYQVKDALKNYVPSLDDAQELSDDHPTRMVNRAASFDYSEERTHS
YVWEVPQPGRGTNFWVPLRINPEQEQLWADLLDGNVSPGQLQLIQNRTSWKLHVAVEYSVEDADYDTDSDDVTHIGLDIGESSLIMGCALRDGSPTRPLV
CDGSRAKHLRKEMHTTLKRLQERDAAEWRIDERFDHYQNALTDIVEKASRQAVEYARGFEKPVLVMEDLTYIRESLDCGKFMNRRLHAWAFARLQDRIED
KARAAGIPVEYVNAAYTSQTCHECGHIGYRDSGGAFHCTNDGCHITTFEGDINGAINIAQRADPWGESVPLKPAGNDSPRDGSACDSTTTHTEQSQSEQM
TLGEVGSKPTASN

 

Blast result :
Comments
ISNph29 is 84% (TnpB) aa similar to ISHmu4. The first ORF is a passenger gene annotated as hypothetical protein.
References
1] Pfeiffer F. (2013) Direct submission to ISfinder
2] Falb M., Pfeiffer F., Palm P., Rodewald K., Hickmann V., Tittor J., Oesterhelt D. (2005) Genome Res. 15: 1336-1343