ISNph23
- Family IS200/IS605
- Group IS1341
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
CR936257 | ND | Natronomonas pharaonis | Natronomonas pharaonis DSM 2160 |
DNA section
IS Length : 1615 bp
Ends
Left end : CATAAGATAGCGCGGAGCCCCCTTCCTCAACGAGCAGCGCAGTCCGTGTAGCGGACAAGCAGCGCAGTAGGGAGGAGAGGAGCGCGTCATGTCCCTCCAC II struct. : No
Right end : CCGTGCCACCGCTCGGTGGCTAGAACGGGAGTCCACGTCAAAGCCCCACCCTCAACGAGCGAGGTTGTCAGACCGAGCGAAGTAGGGTGGGGTAGTTTAC II struct. : Yes
Insertion site
Left flank | LE cleavage site | Right flank | RE cleavage site |
---|---|---|---|
TGCCGACCCGTG | TCAG | ACGAGTAGCTGG | TTAC |
GGCCGGCCGATG | TCAG | ACGAGGAAGCCA | TTAC |
DNA sequence
CATAAGATAGCGCGGAGCCCCCTTCCTCAACGAGCAGCGCAGTCCGTGTAGCGGACAAGCAGCGCAGTAGGGAGGAGAGGAGCGCGTCATGTCCCTCCAC
TAACACTGCTCTCTACACTCGGCCAACTCCCCTTCCCCCAACACCTAATAAAAATTTAACTGAATAGAAAACATTGAAAAACGTATGGAAGTGCGTCGGA
CGCTCCCTGTCAAACTCCTCGTGGCCGACAGCAACAGAGACGCACTTCTCGAAACCATCGACCAGTACAAAGACTGTGCGAACGAAACCAGCGACCACTG
CTGGGACGAAAACGACTACAAAAAAACAGCCAAGTACGCTGTCAAAGACGAACTGTACCACGACCTCAAAGCAGAGCACGACTTGACGGCGAATCTCGTC
CAGCAAGCCATCTTCCAAGCCGTCGAAGCCGTCAAAGCTGGTGTCGAACGACTCGAAAAGAACGAAGACACTAGCCAACCCGAGTTTACCGCTGACACCG
CTCGCTACGACAAACGTGCTGCGACCTTCCACGACGACCATGTTTCCTTGTCGACCGTGGACGGGCGTATCGAGGCTGACTATGTTCTCCCGGTAGACGA
GACAAACACACCGTTCGAAGAGTACCTCAACGGCGACGAGTGGGAGTTCCGCACCAGCACACTCCACTACAAGCCCTTCGACGACGAGTTCTGGCTGCAC
ATCGGCTTCAAACGGAACAAGGAAGCCACCGACAGCACCCAACCTGACGCCGCTGTCCCCGAGCACAACACAGTCCTCGGGATCGACCTCGGCGTCGAAA
ACCTCGCTGTCGCATCAACCGGGACGTTTTGGACGGGCGACGAGCTCGACCACTGGCACCGTGAGTTTCAACAGCGGCGGGGTAACCTCCAACAAGTCGG
CTCACAGGAGGCTCACCGCACGCTCCAACGTGTGAGCAAGAAAGAAACGGCCTACTACAAGCAGTATCTCCACGTCGTCGCCAACGAGATTGTCGAGGAG
GCGGTCGAACACGACTGTTCGGTAATCGCCTTCGAGGATTTAACTGACATCCGCAAACGAGCACAGGGAGCGACATGGCATCATCGCTGGCGGTTTAACC
GCCTGTATGAGTACGTCGAGTACAAAGCGAAGGCTTACGGGATCGACGTTGAGGAGTTAGAACGGAGCCCACAGGCGAAGACGGTGCCAGCCTACTACAC
ATCCCAGCGATGCAGCAGTTGTGGGCTTACCCACGAGGACAACCGCCCCACGCAAGCGCACTTCGAGTGCCAGAAGTGTGGCTACGAGAATCATGCCGAC
TACAACGCCGCCAAGAACGTGGCAGTACGCTGCTGTCGGCGGCTACTCCGTCGCAACCAGACTGGGGGCGACGGAGGCGCACCCGTAGACGTCGCGCTGA
ATGGCGGGACGATGACCGTGAACGTGTAAGCTGGGCGAGACCGACGGTCTCGCTAGCGATGCGGGCGGAACGCCCGCAGAGCACTGAAGCCCCTTGGACG
GGGAGCCGGGCCTCTCCGTGCCACCGCTCGGTGGCTAGAACGGGAGTCCACGTCAAAGCCCCACCCTCAACGAGCGAGGTTGTCAGACCGAGCGAAGTAG
GGTGGGGTAGTTTAC
TAACACTGCTCTCTACACTCGGCCAACTCCCCTTCCCCCAACACCTAATAAAAATTTAACTGAATAGAAAACATTGAAAAACGTATGGAAGTGCGTCGGA
CGCTCCCTGTCAAACTCCTCGTGGCCGACAGCAACAGAGACGCACTTCTCGAAACCATCGACCAGTACAAAGACTGTGCGAACGAAACCAGCGACCACTG
CTGGGACGAAAACGACTACAAAAAAACAGCCAAGTACGCTGTCAAAGACGAACTGTACCACGACCTCAAAGCAGAGCACGACTTGACGGCGAATCTCGTC
CAGCAAGCCATCTTCCAAGCCGTCGAAGCCGTCAAAGCTGGTGTCGAACGACTCGAAAAGAACGAAGACACTAGCCAACCCGAGTTTACCGCTGACACCG
CTCGCTACGACAAACGTGCTGCGACCTTCCACGACGACCATGTTTCCTTGTCGACCGTGGACGGGCGTATCGAGGCTGACTATGTTCTCCCGGTAGACGA
GACAAACACACCGTTCGAAGAGTACCTCAACGGCGACGAGTGGGAGTTCCGCACCAGCACACTCCACTACAAGCCCTTCGACGACGAGTTCTGGCTGCAC
ATCGGCTTCAAACGGAACAAGGAAGCCACCGACAGCACCCAACCTGACGCCGCTGTCCCCGAGCACAACACAGTCCTCGGGATCGACCTCGGCGTCGAAA
ACCTCGCTGTCGCATCAACCGGGACGTTTTGGACGGGCGACGAGCTCGACCACTGGCACCGTGAGTTTCAACAGCGGCGGGGTAACCTCCAACAAGTCGG
CTCACAGGAGGCTCACCGCACGCTCCAACGTGTGAGCAAGAAAGAAACGGCCTACTACAAGCAGTATCTCCACGTCGTCGCCAACGAGATTGTCGAGGAG
GCGGTCGAACACGACTGTTCGGTAATCGCCTTCGAGGATTTAACTGACATCCGCAAACGAGCACAGGGAGCGACATGGCATCATCGCTGGCGGTTTAACC
GCCTGTATGAGTACGTCGAGTACAAAGCGAAGGCTTACGGGATCGACGTTGAGGAGTTAGAACGGAGCCCACAGGCGAAGACGGTGCCAGCCTACTACAC
ATCCCAGCGATGCAGCAGTTGTGGGCTTACCCACGAGGACAACCGCCCCACGCAAGCGCACTTCGAGTGCCAGAAGTGTGGCTACGAGAATCATGCCGAC
TACAACGCCGCCAAGAACGTGGCAGTACGCTGCTGTCGGCGGCTACTCCGTCGCAACCAGACTGGGGGCGACGGAGGCGCACCCGTAGACGTCGCGCTGA
ATGGCGGGACGATGACCGTGAACGTGTAAGCTGGGCGAGACCGACGGTCTCGCTAGCGATGCGGGCGGAACGCCCGCAGAGCACTGAAGCCCCTTGGACG
GGGAGCCGGGCCTCTCCGTGCCACCGCTCGGTGGCTAGAACGGGAGTCCACGTCAAAGCCCCACCCTCAACGAGCGAGGTTGTCAGACCGAGCGAAGTAG
GGTGGGGTAGTTTAC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1245 bp | 414 aa | 185 | 1429 | + | No |
AG : TnpB
ORF sequence :
MEVRRTLPVKLLVADSNRDALLETIDQYKDCANETSDHCWDENDYKKTAKYAVKDELYHDLKAEHDLTANLVQQAIFQAVEAVKAGVERLEKNEDTSQPE
FTADTARYDKRAATFHDDHVSLSTVDGRIEADYVLPVDETNTPFEEYLNGDEWEFRTSTLHYKPFDDEFWLHIGFKRNKEATDSTQPDAAVPEHNTVLGI
DLGVENLAVASTGTFWTGDELDHWHREFQQRRGNLQQVGSQEAHRTLQRVSKKETAYYKQYLHVVANEIVEEAVEHDCSVIAFEDLTDIRKRAQGATWHH
RWRFNRLYEYVEYKAKAYGIDVEELERSPQAKTVPAYYTSQRCSSCGLTHEDNRPTQAHFECQKCGYENHADYNAAKNVAVRCCRRLLRRNQTGGDGGAP
VDVALNGGTMTVNV
FTADTARYDKRAATFHDDHVSLSTVDGRIEADYVLPVDETNTPFEEYLNGDEWEFRTSTLHYKPFDDEFWLHIGFKRNKEATDSTQPDAAVPEHNTVLGI
DLGVENLAVASTGTFWTGDELDHWHREFQQRRGNLQQVGSQEAHRTLQRVSKKETAYYKQYLHVVANEIVEEAVEHDCSVIAFEDLTDIRKRAQGATWHH
RWRFNRLYEYVEYKAKAYGIDVEELERSPQAKTVPAYYTSQRCSSCGLTHEDNRPTQAHFECQKCGYENHADYNAAKNVAVRCCRRLLRRNQTGGDGGAP
VDVALNGGTMTVNV
Blast result :
Comments
ISNph23 is 68% (TnpB) aa similar to ISHwa28.
References
1] Pfeiffer F. (2013) Direct submission to ISfinder
2] Falb M., Pfeiffer F., Palm P., Rodewald K., Hickmann V., Tittor J.,
Oesterhelt D. (2005) Genome Res. 15: 1336-1343
2] Falb M., Pfeiffer F., Palm P., Rodewald K., Hickmann V., Tittor J.,
Oesterhelt D. (2005) Genome Res. 15: 1336-1343