ISNph23

  • Family IS200/IS605
  • Group IS1341
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
CR936257 ND Natronomonas pharaonis
Natronomonas pharaonis DSM 2160
DNA section
IS Length : 1615 bp

Ends


Left end : CATAAGATAGCGCGGAGCCCCCTTCCTCAACGAGCAGCGCAGTCCGTGTAGCGGACAAGCAGCGCAGTAGGGAGGAGAGGAGCGCGTCATGTCCCTCCAC II struct. : No
Right end : CCGTGCCACCGCTCGGTGGCTAGAACGGGAGTCCACGTCAAAGCCCCACCCTCAACGAGCGAGGTTGTCAGACCGAGCGAAGTAGGGTGGGGTAGTTTAC II struct. : Yes

Insertion site


Left flankLE cleavage siteRight flankRE cleavage site
TGCCGACCCGTGTCAGACGAGTAGCTGGTTAC
GGCCGGCCGATGTCAGACGAGGAAGCCATTAC

DNA sequence

CATAAGATAGCGCGGAGCCCCCTTCCTCAACGAGCAGCGCAGTCCGTGTAGCGGACAAGCAGCGCAGTAGGGAGGAGAGGAGCGCGTCATGTCCCTCCAC
TAACACTGCTCTCTACACTCGGCCAACTCCCCTTCCCCCAACACCTAATAAAAATTTAACTGAATAGAAAACATTGAAAAACGTATGGAAGTGCGTCGGA
CGCTCCCTGTCAAACTCCTCGTGGCCGACAGCAACAGAGACGCACTTCTCGAAACCATCGACCAGTACAAAGACTGTGCGAACGAAACCAGCGACCACTG
CTGGGACGAAAACGACTACAAAAAAACAGCCAAGTACGCTGTCAAAGACGAACTGTACCACGACCTCAAAGCAGAGCACGACTTGACGGCGAATCTCGTC
CAGCAAGCCATCTTCCAAGCCGTCGAAGCCGTCAAAGCTGGTGTCGAACGACTCGAAAAGAACGAAGACACTAGCCAACCCGAGTTTACCGCTGACACCG
CTCGCTACGACAAACGTGCTGCGACCTTCCACGACGACCATGTTTCCTTGTCGACCGTGGACGGGCGTATCGAGGCTGACTATGTTCTCCCGGTAGACGA
GACAAACACACCGTTCGAAGAGTACCTCAACGGCGACGAGTGGGAGTTCCGCACCAGCACACTCCACTACAAGCCCTTCGACGACGAGTTCTGGCTGCAC
ATCGGCTTCAAACGGAACAAGGAAGCCACCGACAGCACCCAACCTGACGCCGCTGTCCCCGAGCACAACACAGTCCTCGGGATCGACCTCGGCGTCGAAA
ACCTCGCTGTCGCATCAACCGGGACGTTTTGGACGGGCGACGAGCTCGACCACTGGCACCGTGAGTTTCAACAGCGGCGGGGTAACCTCCAACAAGTCGG
CTCACAGGAGGCTCACCGCACGCTCCAACGTGTGAGCAAGAAAGAAACGGCCTACTACAAGCAGTATCTCCACGTCGTCGCCAACGAGATTGTCGAGGAG
GCGGTCGAACACGACTGTTCGGTAATCGCCTTCGAGGATTTAACTGACATCCGCAAACGAGCACAGGGAGCGACATGGCATCATCGCTGGCGGTTTAACC
GCCTGTATGAGTACGTCGAGTACAAAGCGAAGGCTTACGGGATCGACGTTGAGGAGTTAGAACGGAGCCCACAGGCGAAGACGGTGCCAGCCTACTACAC
ATCCCAGCGATGCAGCAGTTGTGGGCTTACCCACGAGGACAACCGCCCCACGCAAGCGCACTTCGAGTGCCAGAAGTGTGGCTACGAGAATCATGCCGAC
TACAACGCCGCCAAGAACGTGGCAGTACGCTGCTGTCGGCGGCTACTCCGTCGCAACCAGACTGGGGGCGACGGAGGCGCACCCGTAGACGTCGCGCTGA
ATGGCGGGACGATGACCGTGAACGTGTAAGCTGGGCGAGACCGACGGTCTCGCTAGCGATGCGGGCGGAACGCCCGCAGAGCACTGAAGCCCCTTGGACG
GGGAGCCGGGCCTCTCCGTGCCACCGCTCGGTGGCTAGAACGGGAGTCCACGTCAAAGCCCCACCCTCAACGAGCGAGGTTGTCAGACCGAGCGAAGTAG
GGTGGGGTAGTTTAC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1245 bp414 aa1851429+No
ORF function : Accessory Gene
AG : TnpB

ORF sequence :

MEVRRTLPVKLLVADSNRDALLETIDQYKDCANETSDHCWDENDYKKTAKYAVKDELYHDLKAEHDLTANLVQQAIFQAVEAVKAGVERLEKNEDTSQPE
FTADTARYDKRAATFHDDHVSLSTVDGRIEADYVLPVDETNTPFEEYLNGDEWEFRTSTLHYKPFDDEFWLHIGFKRNKEATDSTQPDAAVPEHNTVLGI
DLGVENLAVASTGTFWTGDELDHWHREFQQRRGNLQQVGSQEAHRTLQRVSKKETAYYKQYLHVVANEIVEEAVEHDCSVIAFEDLTDIRKRAQGATWHH
RWRFNRLYEYVEYKAKAYGIDVEELERSPQAKTVPAYYTSQRCSSCGLTHEDNRPTQAHFECQKCGYENHADYNAAKNVAVRCCRRLLRRNQTGGDGGAP
VDVALNGGTMTVNV

 

Blast result :
Comments
ISNph23 is 68% (TnpB) aa similar to ISHwa28.
References
1] Pfeiffer F. (2013) Direct submission to ISfinder
2] Falb M., Pfeiffer F., Palm P., Rodewald K., Hickmann V., Tittor J.,
Oesterhelt D. (2005) Genome Res. 15: 1336-1343