ISHaha9
- Family IS200/IS605
- Group IS1341
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
HE717023 | ND | Halobacillus halophilus | Halobacillus halophilus DSM 2266 |
DNA section
IS Length : 1417 bp
Ends
Left end : ACGAAATTAGCAAGAAGTCCCCTTCCTCAAAAATGCGTTAGCATTTTAGGTGGGGGATGAATTGTTTCTTTTTTTGTTTTTCTTTTGATAATAAAAGACT II struct. : Yes
Right end : TGGGGTTAGCTCGGCAAATTTGGTTGGCTACTAGAAGCAACTACGACCCGAGAAGCCCCCACTTCAAATTTCGTTAGTAATTAAGTGGTGGGTAGTTCAC II struct. : Yes
Insertion site
Left flank | LE cleavage site | Right flank | RE cleavage site |
---|---|---|---|
AGCCTACTTT | TTTA | AGGGTCACAG | tcac |
AATTATAAAA | TTTA | CAAAGCCTTT | tcac |
ATTTCCACTT | TTTA | TAATGCTAGT | tcac |
DNA sequence
ACGAAATTAGCAAGAAGTCCCCTTCCTCAAAAATGCGTTAGCATTTTAGGTGGGGGATGAATTGTTTCTTTTTTTGTTTTTCTTTTGATAATAAAAGACT
TTCGAAGAATTTTTTGGTACTATTGAATTACGAACAAACATTCTGTTGAGAGGAGGTAATTTGATATGGTCAAAAAGAACAAAGCTTTCAAATTCAAAAC
AGAACCAAATTTTGAGCAACTAAACTTAATTAAAAGAACCTTCGGTTCTGCCCGCTTTATATTCAACAAAATGCTGGATGACCGCATTTTAGCTTATGAA
GATTACAAAAATGACCAAAGCGAACTGAAGAAAATGAAGTTTCCAACGCCAGCGAAATACAAAAAAGAATATCCTTTTTTGAAAGAAGTGGATAGTCTTG
CTTTGGCCAACACTCAAATGAACCTGGATAAAGCTTATAAGGCTTTTTTTACTGGTCAAAATAAATTCCCAAAACACAAAAGCCGTAAAGCTCGTAAGAG
CTATACGACAAATGTGGTTAACGGAAATATTATGGTCCAGGATGGCTATATCAAATTACCGAAACTCAAATGGGTGAAGTTGAAACAACATAGACAAATA
CCTGAAGGAAGCAAGTTGAAATCGGTCACGGTTTCAATGTCTGCGACAGGTAAAATTTATGTTTCTATTCTTACTGAATACGAAGTTGAACCTAAAGAGG
TTCAACCAGAAAATATTATTGGTCTAGATTATTCTATGAAGGAATTGTTTGTAGCAAACGAAGGCACGAGAGCCAAGTACCCTCGTTTCTACCGTCAATC
AGAGGATAGACTAGCCAAAGAGCAGCGCGTGTTATCACGCAGAAAGAAAGGCTCGAACCGTTGGTTCAAGCAGAAAAATAAAGTAGCGAAGCTACATGAA
AAAGTAGCAAACCAACGCAAAGATTTCTGCCACAAGTGGAGCCGTAATTTAGCTGATAACTTTGATGCCATAGCTATTGAAGACCTTAACATGAAAGATA
TGTCTAAGGCTCTTAAATTCGGCAAAAGCGTGCACGATAACGGATGGGGAATGTTCGCCTCATTTCTTTCTTACAAGCTCGAAGAGCTTGGAAAGAAGCT
TGTCAAGGTCGGCAAATGGTTCCCATCCTCTAAAACGTGCTCCAAATGCGGTGGTATTGATAAACAACTAACAATGAGCATACGAACTTACAAATGCGCT
TGTGGCCACGTTCAAGACCGCGATGTGAACGCGGCTATTAACATAAAAGTAGAAGGAAAAAGGCTCCTTTCGGAGCATCAGTAATCCTAATTTCCATAAT
ATAAACCGTTGGGACAATGGGGTTAGCTCGGCAAATTTGGTTGGCTACTAGAAGCAACTACGACCCGAGAAGCCCCCACTTCAAATTTCGTTAGTAATTA
AGTGGTGGGTAGTTCAC
TTCGAAGAATTTTTTGGTACTATTGAATTACGAACAAACATTCTGTTGAGAGGAGGTAATTTGATATGGTCAAAAAGAACAAAGCTTTCAAATTCAAAAC
AGAACCAAATTTTGAGCAACTAAACTTAATTAAAAGAACCTTCGGTTCTGCCCGCTTTATATTCAACAAAATGCTGGATGACCGCATTTTAGCTTATGAA
GATTACAAAAATGACCAAAGCGAACTGAAGAAAATGAAGTTTCCAACGCCAGCGAAATACAAAAAAGAATATCCTTTTTTGAAAGAAGTGGATAGTCTTG
CTTTGGCCAACACTCAAATGAACCTGGATAAAGCTTATAAGGCTTTTTTTACTGGTCAAAATAAATTCCCAAAACACAAAAGCCGTAAAGCTCGTAAGAG
CTATACGACAAATGTGGTTAACGGAAATATTATGGTCCAGGATGGCTATATCAAATTACCGAAACTCAAATGGGTGAAGTTGAAACAACATAGACAAATA
CCTGAAGGAAGCAAGTTGAAATCGGTCACGGTTTCAATGTCTGCGACAGGTAAAATTTATGTTTCTATTCTTACTGAATACGAAGTTGAACCTAAAGAGG
TTCAACCAGAAAATATTATTGGTCTAGATTATTCTATGAAGGAATTGTTTGTAGCAAACGAAGGCACGAGAGCCAAGTACCCTCGTTTCTACCGTCAATC
AGAGGATAGACTAGCCAAAGAGCAGCGCGTGTTATCACGCAGAAAGAAAGGCTCGAACCGTTGGTTCAAGCAGAAAAATAAAGTAGCGAAGCTACATGAA
AAAGTAGCAAACCAACGCAAAGATTTCTGCCACAAGTGGAGCCGTAATTTAGCTGATAACTTTGATGCCATAGCTATTGAAGACCTTAACATGAAAGATA
TGTCTAAGGCTCTTAAATTCGGCAAAAGCGTGCACGATAACGGATGGGGAATGTTCGCCTCATTTCTTTCTTACAAGCTCGAAGAGCTTGGAAAGAAGCT
TGTCAAGGTCGGCAAATGGTTCCCATCCTCTAAAACGTGCTCCAAATGCGGTGGTATTGATAAACAACTAACAATGAGCATACGAACTTACAAATGCGCT
TGTGGCCACGTTCAAGACCGCGATGTGAACGCGGCTATTAACATAAAAGTAGAAGGAAAAAGGCTCCTTTCGGAGCATCAGTAATCCTAATTTCCATAAT
ATAAACCGTTGGGACAATGGGGTTAGCTCGGCAAATTTGGTTGGCTACTAGAAGCAACTACGACCCGAGAAGCCCCCACTTCAAATTTCGTTAGTAATTA
AGTGGTGGGTAGTTCAC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1119 bp | 372 aa | 166 | 1284 | + | No |
AG : TnpB
ORF sequence :
MVKKNKAFKFKTEPNFEQLNLIKRTFGSARFIFNKMLDDRILAYEDYKNDQSELKKMKFPTPAKYKKEYPFLKEVDSLALANTQMNLDKAYKAFFTGQNK
FPKHKSRKARKSYTTNVVNGNIMVQDGYIKLPKLKWVKLKQHRQIPEGSKLKSVTVSMSATGKIYVSILTEYEVEPKEVQPENIIGLDYSMKELFVANEG
TRAKYPRFYRQSEDRLAKEQRVLSRRKKGSNRWFKQKNKVAKLHEKVANQRKDFCHKWSRNLADNFDAIAIEDLNMKDMSKALKFGKSVHDNGWGMFASF
LSYKLEELGKKLVKVGKWFPSSKTCSKCGGIDKQLTMSIRTYKCACGHVQDRDVNAAINIKVEGKRLLSEHQ
FPKHKSRKARKSYTTNVVNGNIMVQDGYIKLPKLKWVKLKQHRQIPEGSKLKSVTVSMSATGKIYVSILTEYEVEPKEVQPENIIGLDYSMKELFVANEG
TRAKYPRFYRQSEDRLAKEQRVLSRRKKGSNRWFKQKNKVAKLHEKVANQRKDFCHKWSRNLADNFDAIAIEDLNMKDMSKALKFGKSVHDNGWGMFASF
LSYKLEELGKKLVKVGKWFPSSKTCSKCGGIDKQLTMSIRTYKCACGHVQDRDVNAAINIKVEGKRLLSEHQ
Blast result :
Comments
ISHaha9 is 78% (TnpB) aa similar to ISBth16.
References