ISHsi1
- Family IS1595
- Group ISH4
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
AOLR01000080 | ND | Haloarcula sinaiiensis | Haloarcula sinaiiensis ATCC 33800 Halonotius sp. J07HN6 |
DNA section
IS Length : 1053 bp
Ends
IR Length : 26
IRL : CGCTCTTCGGTAGACTGGCGGAACTAAGAGCATTAGTGCCTCTAGCCGGG
IRR : CGCTCTTCGGTAGACTGGCGGAACTAGCGGAATACATTGACGGCGATGCA
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
CTTCTCAGCA | AGTGAAAATA | 0 |
DNA sequence
CGCTCTTCGGTAGACTGGCGGAACTAAGAGCATTAGTGCCTCTAGCCGGGCAGAAACGGATATGCACGAAGACCGCCCTGCCTTCGGTCAGAGGCTATCG
GAACTTGCGGAGCTTGGAGTAATAAAATTTCGGCCCGAGCCGCTCGACGCCATCGTCGAGCGGCGTCTCAAGACAATCTGGGAGGAACGATCCTGCCCGC
ACTGCGGTGCAGACAGTCTCCATGCTCTCAGCGGCTCTGACCGTATCTGGTGTGGCCGCTGTGACTGGAAAAGCACGTACACACGAGGGACACCCTTCTA
CCATTCGGAACTCACCCCCGGTGAGTTCCTCATCGCGTTCATTCTCTACGCTGACACACTGCTCAGCATTACCCAAATCGCCGGTCTCCTCTCACCGTGT
TACACGACGCTTCACGACCAGCTCAGAGGGTTTGAAACCGCGTTCTGTCGGGGATTTCCGACTGTCTGGGAGCGCATATCCCAGACAGTCGATGGGCCAA
CACAGGTCGATGAAACACAGCAGATGTGTTCGAGCTTCAAAGGCCAAGACCCGCCGCGGGAGGGACTCGACCGCGGCGGGTCGCCCGAGGGCGGACGCAC
CCGCTGGACAGGGGATCAGGGAGACAAAATAACGCTCGTCGCGGCTTGCCGCGACGTGCTTCGCGTGGTCTCAGCCCAAGAGGGAAGCGACTACGAAGAT
GATCTCGGGCCAGTTATCGAGGAAGCAGACGACCTCTCCCAGCCGCTGGGAGAGGTCTGGACTGATGGATTGCCAGCATACCGAGGCATGGAGCACGATC
ACCGATACGTTGTCCACGACGACCGGTACGTCTCCGACGAAGGCGTCCACACAAACCAGGTGGAGTGTCTCTGGCCACTGCTCCAGCCGTGGTTGGCGAA
GTTCCGCGGCCTGTCCAAGCAGGGCTTGGAGCAGGCCGCTCGGACCTACGGCTTCCTCCGGTCACTGAACCTTACTGGGGCACCGATCCACGGTCTCGTT
GATTGCATCGCCGTCAATGTATTCCGCTAGTTCCGCCAGTCTACCGAAGAGCG
GAACTTGCGGAGCTTGGAGTAATAAAATTTCGGCCCGAGCCGCTCGACGCCATCGTCGAGCGGCGTCTCAAGACAATCTGGGAGGAACGATCCTGCCCGC
ACTGCGGTGCAGACAGTCTCCATGCTCTCAGCGGCTCTGACCGTATCTGGTGTGGCCGCTGTGACTGGAAAAGCACGTACACACGAGGGACACCCTTCTA
CCATTCGGAACTCACCCCCGGTGAGTTCCTCATCGCGTTCATTCTCTACGCTGACACACTGCTCAGCATTACCCAAATCGCCGGTCTCCTCTCACCGTGT
TACACGACGCTTCACGACCAGCTCAGAGGGTTTGAAACCGCGTTCTGTCGGGGATTTCCGACTGTCTGGGAGCGCATATCCCAGACAGTCGATGGGCCAA
CACAGGTCGATGAAACACAGCAGATGTGTTCGAGCTTCAAAGGCCAAGACCCGCCGCGGGAGGGACTCGACCGCGGCGGGTCGCCCGAGGGCGGACGCAC
CCGCTGGACAGGGGATCAGGGAGACAAAATAACGCTCGTCGCGGCTTGCCGCGACGTGCTTCGCGTGGTCTCAGCCCAAGAGGGAAGCGACTACGAAGAT
GATCTCGGGCCAGTTATCGAGGAAGCAGACGACCTCTCCCAGCCGCTGGGAGAGGTCTGGACTGATGGATTGCCAGCATACCGAGGCATGGAGCACGATC
ACCGATACGTTGTCCACGACGACCGGTACGTCTCCGACGAAGGCGTCCACACAAACCAGGTGGAGTGTCTCTGGCCACTGCTCCAGCCGTGGTTGGCGAA
GTTCCGCGGCCTGTCCAAGCAGGGCTTGGAGCAGGCCGCTCGGACCTACGGCTTCCTCCGGTCACTGAACCTTACTGGGGCACCGATCCACGGTCTCGTT
GATTGCATCGCCGTCAATGTATTCCGCTAGTTCCGCCAGTCTACCGAAGAGCG
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
969 bp | 322 aa | 62 | 1030 | + | No |
Chemistry : DDE
ORF sequence :
MHEDRPAFGQRLSELAELGVIKFRPEPLDAIVERRLKTIWEERSCPHCGADSLHALSGSDRIWCGRCDWKSTYTRGTPFYHSELTPGEFLIAFILYADTL
LSITQIAGLLSPCYTTLHDQLRGFETAFCRGFPTVWERISQTVDGPTQVDETQQMCSSFKGQDPPREGLDRGGSPEGGRTRWTGDQGDKITLVAACRDVL
RVVSAQEGSDYEDDLGPVIEEADDLSQPLGEVWTDGLPAYRGMEHDHRYVVHDDRYVSDEGVHTNQVECLWPLLQPWLAKFRGLSKQGLEQAARTYGFLR
SLNLTGAPIHGLVDCIAVNVFR
LSITQIAGLLSPCYTTLHDQLRGFETAFCRGFPTVWERISQTVDGPTQVDETQQMCSSFKGQDPPREGLDRGGSPEGGRTRWTGDQGDKITLVAACRDVL
RVVSAQEGSDYEDDLGPVIEEADDLSQPLGEVWTDGLPAYRGMEHDHRYVVHDDRYVSDEGVHTNQVECLWPLLQPWLAKFRGLSKQGLEQAARTYGFLR
SLNLTGAPIHGLVDCIAVNVFR
Blast result :
Comments
ISHsi1 is 70% aa similar to ISHli6.
References
1] Pfeiffer F. (2015) Direct submission
2] Becker,E.A., Seitzer,P., Tritt,A., Larsen,D., Yao,A., Wu,D., Darling,A., Eisen,J.A. and Facciotti,M.T. (2012) Direct submission to GenBanK
2] Becker,E.A., Seitzer,P., Tritt,A., Larsen,D., Yao,A., Wu,D., Darling,A., Eisen,J.A. and Facciotti,M.T. (2012) Direct submission to GenBanK