ISHsi1

  • Family IS1595
  • Group ISH4
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
AOLR01000080 ND Haloarcula sinaiiensis
Haloarcula sinaiiensis ATCC 33800
Halonotius sp. J07HN6
DNA section
IS Length : 1053 bp

Ends


IR Length : 26

IRL : CGCTCTTCGGTAGACTGGCGGAACTAAGAGCATTAGTGCCTCTAGCCGGG
IRR : CGCTCTTCGGTAGACTGGCGGAACTAGCGGAATACATTGACGGCGATGCA

Insertion site


Left flankDirect repeatRight flankDR Length
CTTCTCAGCAAGTGAAAATA0

DNA sequence

CGCTCTTCGGTAGACTGGCGGAACTAAGAGCATTAGTGCCTCTAGCCGGGCAGAAACGGATATGCACGAAGACCGCCCTGCCTTCGGTCAGAGGCTATCG
GAACTTGCGGAGCTTGGAGTAATAAAATTTCGGCCCGAGCCGCTCGACGCCATCGTCGAGCGGCGTCTCAAGACAATCTGGGAGGAACGATCCTGCCCGC
ACTGCGGTGCAGACAGTCTCCATGCTCTCAGCGGCTCTGACCGTATCTGGTGTGGCCGCTGTGACTGGAAAAGCACGTACACACGAGGGACACCCTTCTA
CCATTCGGAACTCACCCCCGGTGAGTTCCTCATCGCGTTCATTCTCTACGCTGACACACTGCTCAGCATTACCCAAATCGCCGGTCTCCTCTCACCGTGT
TACACGACGCTTCACGACCAGCTCAGAGGGTTTGAAACCGCGTTCTGTCGGGGATTTCCGACTGTCTGGGAGCGCATATCCCAGACAGTCGATGGGCCAA
CACAGGTCGATGAAACACAGCAGATGTGTTCGAGCTTCAAAGGCCAAGACCCGCCGCGGGAGGGACTCGACCGCGGCGGGTCGCCCGAGGGCGGACGCAC
CCGCTGGACAGGGGATCAGGGAGACAAAATAACGCTCGTCGCGGCTTGCCGCGACGTGCTTCGCGTGGTCTCAGCCCAAGAGGGAAGCGACTACGAAGAT
GATCTCGGGCCAGTTATCGAGGAAGCAGACGACCTCTCCCAGCCGCTGGGAGAGGTCTGGACTGATGGATTGCCAGCATACCGAGGCATGGAGCACGATC
ACCGATACGTTGTCCACGACGACCGGTACGTCTCCGACGAAGGCGTCCACACAAACCAGGTGGAGTGTCTCTGGCCACTGCTCCAGCCGTGGTTGGCGAA
GTTCCGCGGCCTGTCCAAGCAGGGCTTGGAGCAGGCCGCTCGGACCTACGGCTTCCTCCGGTCACTGAACCTTACTGGGGCACCGATCCACGGTCTCGTT
GATTGCATCGCCGTCAATGTATTCCGCTAGTTCCGCCAGTCTACCGAAGAGCG
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
969 bp322 aa621030+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MHEDRPAFGQRLSELAELGVIKFRPEPLDAIVERRLKTIWEERSCPHCGADSLHALSGSDRIWCGRCDWKSTYTRGTPFYHSELTPGEFLIAFILYADTL
LSITQIAGLLSPCYTTLHDQLRGFETAFCRGFPTVWERISQTVDGPTQVDETQQMCSSFKGQDPPREGLDRGGSPEGGRTRWTGDQGDKITLVAACRDVL
RVVSAQEGSDYEDDLGPVIEEADDLSQPLGEVWTDGLPAYRGMEHDHRYVVHDDRYVSDEGVHTNQVECLWPLLQPWLAKFRGLSKQGLEQAARTYGFLR
SLNLTGAPIHGLVDCIAVNVFR

 

Blast result :
Comments
ISHsi1 is 70% aa similar to ISHli6.
References
1] Pfeiffer F. (2015) Direct submission
2] Becker,E.A., Seitzer,P., Tritt,A., Larsen,D., Yao,A., Wu,D., Darling,A., Eisen,J.A. and Facciotti,M.T. (2012) Direct submission to GenBanK