ISNma22
- Family IS200/IS605
- Group IS1341
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
CP001932 | ND | Natrialba magadii | Natrialba magadii ATCC 43099 |
DNA section
IS Length : 1417 bp
Ends
Left end : GAGCGGTACAGGAGAATACCCCGACCCTTGAGGTCGGGGATGAATCCGATAGGCGTAGCGATACTATCCATTAAGTAGATACATTCCAAACACGCAGACA II struct. : Yes
Right end : CGTTGAATCAGGAAGCCTCGGGGTCGACCGAGAGAGCAAAGCTCTCTCGTGATGACGAGAATCTTCAATTCTCGAACCACTTGACCCCGAGGCGATTCAC II struct. : Yes
Insertion site
Left flank | LE cleavage site | Right flank | RE cleavage site |
---|---|---|---|
CCTACGTCCTATT | TTAT | CGTCCCAGGCGC | tcac |
DNA sequence
GAGCGGTACAGGAGAATACCCCGACCCTTGAGGTCGGGGATGAATCCGATAGGCGTAGCGATACTATCCATTAAGTAGATACATTCCAAACACGCAGACA
GCGATGGAACACAGCCACCGTTACCGCGCTTACCCAAGCGACAAGGTAGCGATGGCTGCTGAACATCATCTCGACGTTCATCGCCAACTCTACAACCACG
TCCGATGGGACTACACGAACAGTCCCGACGACGACAAACCAAGCGAATACCAGCAGAACAACAAACTGCCAGAGTGGAAGCGCAAGTGGCCTGTATTCGC
GGAACTTCACTCGAAAGCCGCACAAGCCACCGTCGCACGCTTCCACGACAACCTCTCGAATCTTCGTAAAAAGAAAGAGAAAGGGTACAAGGTTGGTCGG
CTCAAACGGCAATCACCCGCCGAATACCGAAGCGTCACGTACAACCAGTCTGGCTTCGACCTCGATAACAAGAGGGGCCGCGACGGATACGCCTACGTGC
GCTTCAGCAAAATCGGCTGGGTGAAAATCCGCTACCACCGATCACTCCCCGAAAACGCAACGATCAAAGAAGTCACGCTGAAAAAGGAGACGACGGGTGA
GTGGTTCGTCTCGTTCAGTCTCGAAACCGACGACGAACACATCCCAGAGAAACCTGCGTTGGACACACTCGACGTGAGCAACAGCGTGGGAATCGACCTT
GGCATCCTCAACTACATCCACACGAGCGACGGCAAGACAGTGGATTGGCTCGATCTCGAAGACGAGTACGAGCGATTGCGCCGAGAGCAACGTAAACTCT
CCCGGAAAGAACACGGGTCGAACAACTACGAGAAACAGCGGCAAACGGTTGCCAAAGTCAAGCGCAAGATTCAGCGAAAAGTACTGGACTACCAGCACAA
AATCACAACGTGGCTCGTCCGTGAGTACGACGCCGTGTTCGTCGAAGACCTCGACGTAGCTGGAATGCTTCAGGGTGACGGCAACGCTCGGAATAAGCAG
GATGCAGCGTGGCGACAATTCATCACACTCCTCGAATACAAGGGAGACTTGTACGGTACGCACGTTGTCCAAGTGCCTGCTCGTGGCACGACGAAAGGGT
GTGCGAAGTGTGGCGTGGAGACAGCGAAACCCGTCTGGGTTCGTGAACACTCCTGTCCGTCTTGCGGGTTCGAGACGGATAGAGATGCGAACGCGGCGAT
GAACGTCCTTCAACGCGGCTTTTCTGAACTAGGGCTGGAATGGCCCGAATCAACGCCTGTGGAGACTGTGCTCCCTACGGACACCGCTGGCTTTCAGCGC
GTGTCTGCAAAGCGCGTCGTTGAATCAGGAAGCCTCGGGGTCGACCGAGAGAGCAAAGCTCTCTCGTGATGACGAGAATCTTCAATTCTCGAACCACTTG
ACCCCGAGGCGATTCAC
GCGATGGAACACAGCCACCGTTACCGCGCTTACCCAAGCGACAAGGTAGCGATGGCTGCTGAACATCATCTCGACGTTCATCGCCAACTCTACAACCACG
TCCGATGGGACTACACGAACAGTCCCGACGACGACAAACCAAGCGAATACCAGCAGAACAACAAACTGCCAGAGTGGAAGCGCAAGTGGCCTGTATTCGC
GGAACTTCACTCGAAAGCCGCACAAGCCACCGTCGCACGCTTCCACGACAACCTCTCGAATCTTCGTAAAAAGAAAGAGAAAGGGTACAAGGTTGGTCGG
CTCAAACGGCAATCACCCGCCGAATACCGAAGCGTCACGTACAACCAGTCTGGCTTCGACCTCGATAACAAGAGGGGCCGCGACGGATACGCCTACGTGC
GCTTCAGCAAAATCGGCTGGGTGAAAATCCGCTACCACCGATCACTCCCCGAAAACGCAACGATCAAAGAAGTCACGCTGAAAAAGGAGACGACGGGTGA
GTGGTTCGTCTCGTTCAGTCTCGAAACCGACGACGAACACATCCCAGAGAAACCTGCGTTGGACACACTCGACGTGAGCAACAGCGTGGGAATCGACCTT
GGCATCCTCAACTACATCCACACGAGCGACGGCAAGACAGTGGATTGGCTCGATCTCGAAGACGAGTACGAGCGATTGCGCCGAGAGCAACGTAAACTCT
CCCGGAAAGAACACGGGTCGAACAACTACGAGAAACAGCGGCAAACGGTTGCCAAAGTCAAGCGCAAGATTCAGCGAAAAGTACTGGACTACCAGCACAA
AATCACAACGTGGCTCGTCCGTGAGTACGACGCCGTGTTCGTCGAAGACCTCGACGTAGCTGGAATGCTTCAGGGTGACGGCAACGCTCGGAATAAGCAG
GATGCAGCGTGGCGACAATTCATCACACTCCTCGAATACAAGGGAGACTTGTACGGTACGCACGTTGTCCAAGTGCCTGCTCGTGGCACGACGAAAGGGT
GTGCGAAGTGTGGCGTGGAGACAGCGAAACCCGTCTGGGTTCGTGAACACTCCTGTCCGTCTTGCGGGTTCGAGACGGATAGAGATGCGAACGCGGCGAT
GAACGTCCTTCAACGCGGCTTTTCTGAACTAGGGCTGGAATGGCCCGAATCAACGCCTGTGGAGACTGTGCTCCCTACGGACACCGCTGGCTTTCAGCGC
GTGTCTGCAAAGCGCGTCGTTGAATCAGGAAGCCTCGGGGTCGACCGAGAGAGCAAAGCTCTCTCGTGATGACGAGAATCTTCAATTCTCGAACCACTTG
ACCCCGAGGCGATTCAC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1266 bp | 421 aa | 104 | 1369 | + | No |
AG : TnpB
ORF sequence :
MEHSHRYRAYPSDKVAMAAEHHLDVHRQLYNHVRWDYTNSPDDDKPSEYQQNNKLPEWKRKWPVFAELHSKAAQATVARFHDNLSNLRKKKEKGYKVGRL
KRQSPAEYRSVTYNQSGFDLDNKRGRDGYAYVRFSKIGWVKIRYHRSLPENATIKEVTLKKETTGEWFVSFSLETDDEHIPEKPALDTLDVSNSVGIDLG
ILNYIHTSDGKTVDWLDLEDEYERLRREQRKLSRKEHGSNNYEKQRQTVAKVKRKIQRKVLDYQHKITTWLVREYDAVFVEDLDVAGMLQGDGNARNKQD
AAWRQFITLLEYKGDLYGTHVVQVPARGTTKGCAKCGVETAKPVWVREHSCPSCGFETDRDANAAMNVLQRGFSELGLEWPESTPVETVLPTDTAGFQRV
SAKRVVESGSLGVDRESKALS
KRQSPAEYRSVTYNQSGFDLDNKRGRDGYAYVRFSKIGWVKIRYHRSLPENATIKEVTLKKETTGEWFVSFSLETDDEHIPEKPALDTLDVSNSVGIDLG
ILNYIHTSDGKTVDWLDLEDEYERLRREQRKLSRKEHGSNNYEKQRQTVAKVKRKIQRKVLDYQHKITTWLVREYDAVFVEDLDVAGMLQGDGNARNKQD
AAWRQFITLLEYKGDLYGTHVVQVPARGTTKGCAKCGVETAKPVWVREHSCPSCGFETDRDANAAMNVLQRGFSELGLEWPESTPVETVLPTDTAGFQRV
SAKRVVESGSLGVDRESKALS
Blast result :
Comments
ISNma22 is 88% (TnpB) aa similar to ISHli12.
References
1] Pfeiffer, F. (2015) Direct submission
2] Siddaramappa, S., Challacombe, J.F., Decastro, R.E., Pfeiffer, F., Sastre, D.E., Gimenez, M.I., Paggi, R.A., Detter, J.C., Davenport, K.W., Goodwin, L.A., Kyrpides, N., Tapia, R., Pitluck, S., Lucas, S., Woyke, T., Maupin-Furlow, J.A. BMC Genomics (2012) 13: 165
2] Siddaramappa, S., Challacombe, J.F., Decastro, R.E., Pfeiffer, F., Sastre, D.E., Gimenez, M.I., Paggi, R.A., Detter, J.C., Davenport, K.W., Goodwin, L.A., Kyrpides, N., Tapia, R., Pitluck, S., Lucas, S., Woyke, T., Maupin-Furlow, J.A. BMC Genomics (2012) 13: 165