ISNma16
- Family IS200/IS605
- Group IS1341
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
CP001934 | ND | Natrialba magadii | Natrialba magadii ATCC 43099 pNMAG02 |
DNA section
IS Length : 1384 bp
Ends
Left end : ACGATATACAGGAGAAAACCCACGGCTTTAGCCGTGGGATGAATCTGTCACTGCTGAATCAAACCACGCTACAGTGACAGGCCGACCCCCTAATGTTTAA II struct. : Yes
Right end : GCGGGATGGTGAACGTGAACGGAGGCTATTCTTCTGCCTCACCTGAGGCCAGAACGGGAGTCCACGCTGAATCCCACCGCTTTAGCGGTGGGTAGCTCAA II struct. : Yes
Insertion site
Left flank | LE cleavage site | Right flank | RE cleavage site |
---|---|---|---|
TGATCGGTCAGT | TTAT | TAATCGGTAGAA | TCAA |
DNA sequence
ACGATATACAGGAGAAAACCCACGGCTTTAGCCGTGGGATGAATCTGTCACTGCTGAATCAAACCACGCTACAGTGACAGGCCGACCCCCTAATGTTTAA
GAAATACTAGTTCTACATATGACATATGGAGGTACGGCGCACCGTCCCCGTTGCACTCGACGTGGACAGCGACGACGCCGTACTCCTCGAAGACACCGTA
GACACGTTCCTCTGGTCGGCACAGTACGTCGTTGACCACGCCTTCGAAGGCGAGTCCGTCACCAGCAGCAAAACCACGTTGGACGACGAAACCTACGACG
ACGTACGCGAGAAAACGGACGGGTTCAACGGCGGGTTGGTGCAAGCCGCTCGGAACAAGGCCGCCGAAGCCTGCAAAAGCGTCGTCACACGCTGGAAACA
CGGCAAGAAAGCGTCGAAACCCACGTTCACCAGCCCACACGTCGTTTACGACCACCGAACAGCCACCTTCCACGACGACCACGTGAGCCTCGCCACCACA
GACGGTCGCATCGAAGCCGACTACGTACTGCCTGACGAGGATAGTGACACGCCGCACTCGGAGTACCTCTTCTCTGACGAGTACGAAACGACGGGTGCGG
AACTACACTACCGTGACGGCAACTGGGTGCTTCACATCCACTGCAAGAAGGGGGTGGAGGCTGACACGTCGGAACAGGAAACCACTGGGAACGGAACGGT
TCTCGGGGTTGACCTCGGCGTGAACAACCTCGCCGTCACCTCGACGGGCACGTTCTGGACGGGCGATGAGTTCGACCACTGGCGGCGCGAGTATGAAAAG
CGACGTGGTTCACTCCAGCAGTGCGGGACGCGCTGGGCGCACGAGAACATCCAGTCAGTCGGACGGAAGGAAGAAGGACGATTCAAACTGATGATGCACC
GCATCAGCAACGAACTCGTCGCTGAAGCTCGTGAAAACGAGTGTGCAGTCATCGCGTTTGAAGACTTAACCGACATCCGTGAGCGGACTGGCGCGTCGTG
GGGGCACAAGTGGGCGTTCGACCGTCTGTACGAGTACGTCGAGTACAAAGCCGAGGAATACGGCATCGATGTGAAGCAGGTTAACCCTGAGAACACGTCA
CGACGTTGCTCGCACTGCGGGTTCACGCACCCTGACAACCGTGCTGGCGAGGAGTTCGAGTGCCTGAAGTGTGGGTACGAAAACCACGCGGATTACAACG
CCGCGAAGAACATCGGCTTGCGGTATCTCCGTCGCAACCAAACTGGCAGCGATGGAGGCGCACCCTTGGGCGTGCGCTTGAACAGCGGGATGGTGAACGT
GAACGGAGGCTATTCTTCTGCCTCACCTGAGGCCAGAACGGGAGTCCACGCTGAATCCCACCGCTTTAGCGGTGGGTAGCTCAA
GAAATACTAGTTCTACATATGACATATGGAGGTACGGCGCACCGTCCCCGTTGCACTCGACGTGGACAGCGACGACGCCGTACTCCTCGAAGACACCGTA
GACACGTTCCTCTGGTCGGCACAGTACGTCGTTGACCACGCCTTCGAAGGCGAGTCCGTCACCAGCAGCAAAACCACGTTGGACGACGAAACCTACGACG
ACGTACGCGAGAAAACGGACGGGTTCAACGGCGGGTTGGTGCAAGCCGCTCGGAACAAGGCCGCCGAAGCCTGCAAAAGCGTCGTCACACGCTGGAAACA
CGGCAAGAAAGCGTCGAAACCCACGTTCACCAGCCCACACGTCGTTTACGACCACCGAACAGCCACCTTCCACGACGACCACGTGAGCCTCGCCACCACA
GACGGTCGCATCGAAGCCGACTACGTACTGCCTGACGAGGATAGTGACACGCCGCACTCGGAGTACCTCTTCTCTGACGAGTACGAAACGACGGGTGCGG
AACTACACTACCGTGACGGCAACTGGGTGCTTCACATCCACTGCAAGAAGGGGGTGGAGGCTGACACGTCGGAACAGGAAACCACTGGGAACGGAACGGT
TCTCGGGGTTGACCTCGGCGTGAACAACCTCGCCGTCACCTCGACGGGCACGTTCTGGACGGGCGATGAGTTCGACCACTGGCGGCGCGAGTATGAAAAG
CGACGTGGTTCACTCCAGCAGTGCGGGACGCGCTGGGCGCACGAGAACATCCAGTCAGTCGGACGGAAGGAAGAAGGACGATTCAAACTGATGATGCACC
GCATCAGCAACGAACTCGTCGCTGAAGCTCGTGAAAACGAGTGTGCAGTCATCGCGTTTGAAGACTTAACCGACATCCGTGAGCGGACTGGCGCGTCGTG
GGGGCACAAGTGGGCGTTCGACCGTCTGTACGAGTACGTCGAGTACAAAGCCGAGGAATACGGCATCGATGTGAAGCAGGTTAACCCTGAGAACACGTCA
CGACGTTGCTCGCACTGCGGGTTCACGCACCCTGACAACCGTGCTGGCGAGGAGTTCGAGTGCCTGAAGTGTGGGTACGAAAACCACGCGGATTACAACG
CCGCGAAGAACATCGGCTTGCGGTATCTCCGTCGCAACCAAACTGGCAGCGATGGAGGCGCACCCTTGGGCGTGCGCTTGAACAGCGGGATGGTGAACGT
GAACGGAGGCTATTCTTCTGCCTCACCTGAGGCCAGAACGGGAGTCCACGCTGAATCCCACCGCTTTAGCGGTGGGTAGCTCAA
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1254 bp | 417 aa | 126 | 1379 | + | No |
AG : TnpB
ORF sequence :
MEVRRTVPVALDVDSDDAVLLEDTVDTFLWSAQYVVDHAFEGESVTSSKTTLDDETYDDVREKTDGFNGGLVQAARNKAAEACKSVVTRWKHGKKASKPT
FTSPHVVYDHRTATFHDDHVSLATTDGRIEADYVLPDEDSDTPHSEYLFSDEYETTGAELHYRDGNWVLHIHCKKGVEADTSEQETTGNGTVLGVDLGVN
NLAVTSTGTFWTGDEFDHWRREYEKRRGSLQQCGTRWAHENIQSVGRKEEGRFKLMMHRISNELVAEARENECAVIAFEDLTDIRERTGASWGHKWAFDR
LYEYVEYKAEEYGIDVKQVNPENTSRRCSHCGFTHPDNRAGEEFECLKCGYENHADYNAAKNIGLRYLRRNQTGSDGGAPLGVRLNSGMVNVNGGYSSAS
PEARTGVHAESHRFSGG
FTSPHVVYDHRTATFHDDHVSLATTDGRIEADYVLPDEDSDTPHSEYLFSDEYETTGAELHYRDGNWVLHIHCKKGVEADTSEQETTGNGTVLGVDLGVN
NLAVTSTGTFWTGDEFDHWRREYEKRRGSLQQCGTRWAHENIQSVGRKEEGRFKLMMHRISNELVAEARENECAVIAFEDLTDIRERTGASWGHKWAFDR
LYEYVEYKAEEYGIDVKQVNPENTSRRCSHCGFTHPDNRAGEEFECLKCGYENHADYNAAKNIGLRYLRRNQTGSDGGAPLGVRLNSGMVNVNGGYSSAS
PEARTGVHAESHRFSGG
Blast result :
Comments
ISNma16 is 94% (TnpB) aa similar to ISNph22.
References
1] Pfeiffer, F. (2015) Direct submission
2] Siddaramappa, S., Challacombe, J.F., Decastro, R.E., Pfeiffer, F., Sastre, D.E., Gimenez, M.I., Paggi, R.A., Detter, J.C., Davenport, K.W., Goodwin, L.A., Kyrpides, N., Tapia, R., Pitluck, S., Lucas, S., Woyke, T., Maupin-Furlow, J.A. BMC Genomics (2012) 13: 165
2] Siddaramappa, S., Challacombe, J.F., Decastro, R.E., Pfeiffer, F., Sastre, D.E., Gimenez, M.I., Paggi, R.A., Detter, J.C., Davenport, K.W., Goodwin, L.A., Kyrpides, N., Tapia, R., Pitluck, S., Lucas, S., Woyke, T., Maupin-Furlow, J.A. BMC Genomics (2012) 13: 165