ISNma11

  • Family IS200/IS605
  • Group IS1341
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
CP001934 ND Natrialba magadii
Natrialba magadii ATCC 43099 pNMAG02
DNA section
IS Length : 1483 bp

Ends


Left end : GGGGAATCAAGGAGAAAGCCTCGCCCCTTCAGGGCGGGGATGAATCCGACAATACCCTACGCAAACCACTGCTCGATGCCACGGCAGGATATTCCACGCG II struct. : Yes
Right end : GAAACTGGCGTGTTCGCGCCTCAAGAACAGGTCACGTCGTAAACCACAATATCCCAACGCGGTCGGGAATCTTCGCCCTTCAGGGCGGAGAGGATGTCAA II struct. : Yes

Insertion site


Left flankLE cleavage siteRight flankRE cleavage site
CGCGACACTGTTTTACCGGGTGACCCGCtcaa

DNA sequence

GGGGAATCAAGGAGAAAGCCTCGCCCCTTCAGGGCGGGGATGAATCCGACAATACCCTACGCAAACCACTGCTCGATGCCACGGCAGGATATTCCACGCG
ACACAATCCATATATTCAAGTAGGTTTGTCTACATAGGTTACGTATGGCGAAACAGGTCGTCACCCGCACCTACACTGCTTCCATCAGGAATCAGCAACA
GGTGTCTGACGACCTCGATTCGCTCGGGTTCTCAGCCTCGAAACTCTGGAACGTCGGACGGTGGACAATCAGTCGAATTTGGGACGAAATCGGCTACATC
CCTGAACACGACGAACTCACCGCGTACCTCAAGAGCCACGAACGCTATGATGACCTGCATTCTCAGTCAAGTCAGCGAGTCCTTCAAGAACTCGCTGAGG
CGTTCAACGGCTGGTACGGCAAACGACGTAACGGAGACGTGAGCGCGAACCCGCCCGGCTACCGCAAACACGGCGACGACCACCCGCGTTCAACGGTCAC
GTTCAAAGCCGCTGGCTTCAAACTCGACACCCAGTACGAGCGCGTTCGACTCTCAAAAGGGTCGAACCTCAAGGAATACTGGTCAGACTTCACCCTCTGC
GAATACCAGACTTGCCCCGACGTTGACCTCTCCTCAGTCGAGAGCGTCCAACAAGTACGAGCGGTCTGGACGGGTGACGAGTGGGAACTGCACTTCGTGT
GCAAAGTCGAGGTCGACGTGGCCGACACACCGGGTGAGAAGACCGTTGGTGTCGATCTCGGCATCAACAACTTTGCAGCACTCGCCTACGAGGACGGCCA
CAGCGAGTTGTACCCGCTGAACTGCCTGAAGCAAGATGACTACTACTTCAGCAAGCGGATTGCTCGGTGCGACGACTCCGACTCTGAGCAGGCCACCCGG
CTGAACCAGAAAAAGTCTCGACGGCGTACTCACTACTTCCACACACTCTCCAAGCACATTGTTCGGCGGTGTGTTGCGGAAGGCGTTGGGACGATCGTGG
TGGGCGATCTCTCCGGAATCCGTGAGGATGAGGAGAACGGTGAGGCGAAGAACTGGGGGACACACGGCAACCTCGATCTGCACTCGTGGGCGTTCGACCG
CTTCACCGACCTGCTCGAATACAAAGCCGAGATGGAGGGAATCTCGATTGAGGAGGTATCCGAGCAGGATACCTCGAAGTCGTGTTCGTGTTGTGGTCGC
AAGCGTGACGCGAACCGTGTTGAACGCGGGTTGTACGTCTGCGACCAGTGCGGGATGACGGCGAACGCAGATGTGAACGGTGCGGAGAACATTCGACAGA
AAGTATCTCCGAGTCCCGCCACGGATGGGGGCGATAGGAGTAACGGCTGGTTGGCACAGCCATCGACGTTCCTGTTTGACAAGGAAACTGGCGTGTTCGC
GCCTCAAGAACAGGTCACGTCGTAAACCACAATATCCCAACGCGGTCGGGAATCTTCGCCCTTCAGGGCGGAGAGGATGTCAA
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1281 bp426 aa1451425+No
ORF function : Accessory Gene
AG : TnpB

ORF sequence :

MAKQVVTRTYTASIRNQQQVSDDLDSLGFSASKLWNVGRWTISRIWDEIGYIPEHDELTAYLKSHERYDDLHSQSSQRVLQELAEAFNGWYGKRRNGDVS
ANPPGYRKHGDDHPRSTVTFKAAGFKLDTQYERVRLSKGSNLKEYWSDFTLCEYQTCPDVDLSSVESVQQVRAVWTGDEWELHFVCKVEVDVADTPGEKT
VGVDLGINNFAALAYEDGHSELYPLNCLKQDDYYFSKRIARCDDSDSEQATRLNQKKSRRRTHYFHTLSKHIVRRCVAEGVGTIVVGDLSGIREDEENGE
AKNWGTHGNLDLHSWAFDRFTDLLEYKAEMEGISIEEVSEQDTSKSCSCCGRKRDANRVERGLYVCDQCGMTANADVNGAENIRQKVSPSPATDGGDRSN
GWLAQPSTFLFDKETGVFAPQEQVTS

 

Blast result :
Comments
ISNma11 is 93% (TnpB) aa similar to ISH39.
References
1] Pfeiffer, F. (2013) Direct submission
2] Siddaramappa, S., Challacombe, J.F., Decastro, R.E., Pfeiffer, F., Sastre, D.E., Gimenez, M.I., Paggi, R.A., Detter, J.C., Davenport, K.W., Goodwin, L.A., Kyrpides, N., Tapia, R., Pitluck, S., Lucas, S., Woyke, T., Maupin-Furlow, J.A. BMC Genomics (2012) 13: 165