ISHwa28

  • Family IS200/IS605
  • Group IS1341
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
AM180088 ND Haloquadratum walsbyi
Haloquadratum walsbyi DSM 16790
DNA section
IS Length : 1482 bp

Ends


Left end : CGTAATTCAAGGTGGAGCCTCCGTCCTCAAGGAGCGAACGGAGTGAGCGAGTAGGTCGGGGAGGAAACCGACAAGGGACGACACAACCGCCACACCCCGA II struct. : Yes
Right end : TTGCTGGAGACTGATTGCCGGGACCGGGAGTCCAGATTAAAGCCCTACCCTCAAGGACTGAGGCGCGTCTGCGCCGAAGGAGTAGGGTAGGGTAGTTTAC II struct. : Yes

Insertion site


Left flankLE cleavage siteRight flankRE cleavage site
AATCGTCGTTTCAGCCCACGGACG

DNA sequence

CGTAATTCAAGGTGGAGCCTCCGTCCTCAAGGAGCGAACGGAGTGAGCGAGTAGGTCGGGGAGGAAACCGACAAGGGACGACACAACCGCCACACCCCGA
CCGACCGACTCCCAAGCGTATAAGTACTGTTGAGTGCTCTCTGAAACTATGGACGTGCGTCGAACCGCCGTCGTGAAACTCGCCGTTTCCGACGAGCAAC
GCGACGCACTCCACCGAACCGCCGAGCAATACCTGTACTGCGCGAACCGAACCGCCGACTACTGTTGGTCCGACACCTCCTACGCCGAGTGTAAGACCAA
CAACCGAGAGGTTCGTGACGCGCTCTACGCCGAACTTCGAGAGGAGACAAACCTACAGGCCCAACTTGTCCAAGCCGCTATCAAACGCGGTGTCGAAGCC
GTCAAAGCGTGTGTCGAACGGTGGAAAAAGGGACAGCGCGTCTCTCAACCGACGTTCACCGCTGAAACGATGGACTACGATACGCGAAGCGCGACGTTCT
ACCGGAACAAGGTGTCGCTGGCAACTGTTGAGGGCCGAGTCGAACCGTCGTTTGTTCTCCCGGCAGACAGTCCGACGCCCTACGAGCGGTACGCACTCTC
AGAGGACTACGAGTTCCGCGAAAGTACGCTTCGGTACGACGCGACCACCGACGAGTTCTACCTTCACATCTCGACGCGGCGGATTGACAGCGACGACGAG
GTTTCGGAAGATACCGGGCACTCCGACCAAACAGTCCTCGGTATCGACCTCGGTGTCAACAGCCTTGCCGTCACCTCCACCGGCACGTTCTGGCAGGGTG
ACGACTACGACCACTGGTGCCGCGAGTTCGAGAAGCGACGTGGAGAGATGCAACAGCGCGGCACGCAAGCCGCGCACAACGCCCTGCTTCGACTCGGGAA
GCGAGAAGAAGCGTGGCGCAAACAGTACATCCACACGATCGCCAACGAACTCGTCACGGAGGCCGTCGAACACGACTGCGACGTTATCGCGTTCGAGGAT
TTAACCGACATACGCGAGCGACTTCCACACGCGAAGTGGCACCACGTGTGGGCGTTCCGACGCCTCTACGAGTACATTTCCTACAAGGCCCCCGAACAGG
GTGTCTCCGTGGAGCAAGTCGAACCGAACCACACGTCTCAACGCTGTTCTCGGACGGACTGCGGGTTCACGCACGAGAATAACCGCCACGGTGAACACTT
TGAGTGCCAGAAGTGTGGGTATGAGGTGAACGCGGACTACAACGGCGCGAAGAACGTCGGGCTACGCTACGCCCGGAAGCGGAGACATAGACTCCGTTCC
TCGCCCACGTCGGGGAGCGGAGACGCACCAGTAGACGTGCGTATAACTGGTGGGACGTTGAACGGCGAGAGTTACCAGCCTATTGCTGGAGACTGATTGC
CGGGACCGGGAGTCCAGATTAAAGCCCTACCCTCAAGGACTGAGGCGCGTCTGCGCCGAAGGAGTAGGGTAGGGTAGTTTAC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1248 bp415 aa1491396+No
ORF function : Accessory Gene
AG : TnpB

ORF sequence :

MDVRRTAVVKLAVSDEQRDALHRTAEQYLYCANRTADYCWSDTSYAECKTNNREVRDALYAELREETNLQAQLVQAAIKRGVEAVKACVERWKKGQRVSQ
PTFTAETMDYDTRSATFYRNKVSLATVEGRVEPSFVLPADSPTPYERYALSEDYEFRESTLRYDATTDEFYLHISTRRIDSDDEVSEDTGHSDQTVLGID
LGVNSLAVTSTGTFWQGDDYDHWCREFEKRRGEMQQRGTQAAHNALLRLGKREEAWRKQYIHTIANELVTEAVEHDCDVIAFEDLTDIRERLPHAKWHHV
WAFRRLYEYISYKAPEQGVSVEQVEPNHTSQRCSRTDCGFTHENNRHGEHFECQKCGYEVNADYNGAKNVGLRYARKRRHRLRSSPTSGSGDAPVDVRIT
GGTLNGESYQPIAGD

 

Blast result :
Comments
ISHwa28 is 70% (TnpB) aa similar to ISNph21.
References
1] Friedhelm Pfeiffer (2012) Direct submission.
2] Bolhuis, H., Palm, P., Wende, A., Falb, M., Rampp, M., Rodriguez-Valera, F., Pfeiffer, F., and Oesterhelt, D. (2006) BMC Genomics 7, 169.