ISHwa28
- Family IS200/IS605
- Group IS1341
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
AM180088 | ND | Haloquadratum walsbyi | Haloquadratum walsbyi DSM 16790 |
DNA section
IS Length : 1482 bp
Ends
Left end : CGTAATTCAAGGTGGAGCCTCCGTCCTCAAGGAGCGAACGGAGTGAGCGAGTAGGTCGGGGAGGAAACCGACAAGGGACGACACAACCGCCACACCCCGA II struct. : Yes
Right end : TTGCTGGAGACTGATTGCCGGGACCGGGAGTCCAGATTAAAGCCCTACCCTCAAGGACTGAGGCGCGTCTGCGCCGAAGGAGTAGGGTAGGGTAGTTTAC II struct. : Yes
Insertion site
Left flank | LE cleavage site | Right flank | RE cleavage site |
---|---|---|---|
AATCGTCGTT | TCAG | CCCACGGACG |
DNA sequence
CGTAATTCAAGGTGGAGCCTCCGTCCTCAAGGAGCGAACGGAGTGAGCGAGTAGGTCGGGGAGGAAACCGACAAGGGACGACACAACCGCCACACCCCGA
CCGACCGACTCCCAAGCGTATAAGTACTGTTGAGTGCTCTCTGAAACTATGGACGTGCGTCGAACCGCCGTCGTGAAACTCGCCGTTTCCGACGAGCAAC
GCGACGCACTCCACCGAACCGCCGAGCAATACCTGTACTGCGCGAACCGAACCGCCGACTACTGTTGGTCCGACACCTCCTACGCCGAGTGTAAGACCAA
CAACCGAGAGGTTCGTGACGCGCTCTACGCCGAACTTCGAGAGGAGACAAACCTACAGGCCCAACTTGTCCAAGCCGCTATCAAACGCGGTGTCGAAGCC
GTCAAAGCGTGTGTCGAACGGTGGAAAAAGGGACAGCGCGTCTCTCAACCGACGTTCACCGCTGAAACGATGGACTACGATACGCGAAGCGCGACGTTCT
ACCGGAACAAGGTGTCGCTGGCAACTGTTGAGGGCCGAGTCGAACCGTCGTTTGTTCTCCCGGCAGACAGTCCGACGCCCTACGAGCGGTACGCACTCTC
AGAGGACTACGAGTTCCGCGAAAGTACGCTTCGGTACGACGCGACCACCGACGAGTTCTACCTTCACATCTCGACGCGGCGGATTGACAGCGACGACGAG
GTTTCGGAAGATACCGGGCACTCCGACCAAACAGTCCTCGGTATCGACCTCGGTGTCAACAGCCTTGCCGTCACCTCCACCGGCACGTTCTGGCAGGGTG
ACGACTACGACCACTGGTGCCGCGAGTTCGAGAAGCGACGTGGAGAGATGCAACAGCGCGGCACGCAAGCCGCGCACAACGCCCTGCTTCGACTCGGGAA
GCGAGAAGAAGCGTGGCGCAAACAGTACATCCACACGATCGCCAACGAACTCGTCACGGAGGCCGTCGAACACGACTGCGACGTTATCGCGTTCGAGGAT
TTAACCGACATACGCGAGCGACTTCCACACGCGAAGTGGCACCACGTGTGGGCGTTCCGACGCCTCTACGAGTACATTTCCTACAAGGCCCCCGAACAGG
GTGTCTCCGTGGAGCAAGTCGAACCGAACCACACGTCTCAACGCTGTTCTCGGACGGACTGCGGGTTCACGCACGAGAATAACCGCCACGGTGAACACTT
TGAGTGCCAGAAGTGTGGGTATGAGGTGAACGCGGACTACAACGGCGCGAAGAACGTCGGGCTACGCTACGCCCGGAAGCGGAGACATAGACTCCGTTCC
TCGCCCACGTCGGGGAGCGGAGACGCACCAGTAGACGTGCGTATAACTGGTGGGACGTTGAACGGCGAGAGTTACCAGCCTATTGCTGGAGACTGATTGC
CGGGACCGGGAGTCCAGATTAAAGCCCTACCCTCAAGGACTGAGGCGCGTCTGCGCCGAAGGAGTAGGGTAGGGTAGTTTAC
CCGACCGACTCCCAAGCGTATAAGTACTGTTGAGTGCTCTCTGAAACTATGGACGTGCGTCGAACCGCCGTCGTGAAACTCGCCGTTTCCGACGAGCAAC
GCGACGCACTCCACCGAACCGCCGAGCAATACCTGTACTGCGCGAACCGAACCGCCGACTACTGTTGGTCCGACACCTCCTACGCCGAGTGTAAGACCAA
CAACCGAGAGGTTCGTGACGCGCTCTACGCCGAACTTCGAGAGGAGACAAACCTACAGGCCCAACTTGTCCAAGCCGCTATCAAACGCGGTGTCGAAGCC
GTCAAAGCGTGTGTCGAACGGTGGAAAAAGGGACAGCGCGTCTCTCAACCGACGTTCACCGCTGAAACGATGGACTACGATACGCGAAGCGCGACGTTCT
ACCGGAACAAGGTGTCGCTGGCAACTGTTGAGGGCCGAGTCGAACCGTCGTTTGTTCTCCCGGCAGACAGTCCGACGCCCTACGAGCGGTACGCACTCTC
AGAGGACTACGAGTTCCGCGAAAGTACGCTTCGGTACGACGCGACCACCGACGAGTTCTACCTTCACATCTCGACGCGGCGGATTGACAGCGACGACGAG
GTTTCGGAAGATACCGGGCACTCCGACCAAACAGTCCTCGGTATCGACCTCGGTGTCAACAGCCTTGCCGTCACCTCCACCGGCACGTTCTGGCAGGGTG
ACGACTACGACCACTGGTGCCGCGAGTTCGAGAAGCGACGTGGAGAGATGCAACAGCGCGGCACGCAAGCCGCGCACAACGCCCTGCTTCGACTCGGGAA
GCGAGAAGAAGCGTGGCGCAAACAGTACATCCACACGATCGCCAACGAACTCGTCACGGAGGCCGTCGAACACGACTGCGACGTTATCGCGTTCGAGGAT
TTAACCGACATACGCGAGCGACTTCCACACGCGAAGTGGCACCACGTGTGGGCGTTCCGACGCCTCTACGAGTACATTTCCTACAAGGCCCCCGAACAGG
GTGTCTCCGTGGAGCAAGTCGAACCGAACCACACGTCTCAACGCTGTTCTCGGACGGACTGCGGGTTCACGCACGAGAATAACCGCCACGGTGAACACTT
TGAGTGCCAGAAGTGTGGGTATGAGGTGAACGCGGACTACAACGGCGCGAAGAACGTCGGGCTACGCTACGCCCGGAAGCGGAGACATAGACTCCGTTCC
TCGCCCACGTCGGGGAGCGGAGACGCACCAGTAGACGTGCGTATAACTGGTGGGACGTTGAACGGCGAGAGTTACCAGCCTATTGCTGGAGACTGATTGC
CGGGACCGGGAGTCCAGATTAAAGCCCTACCCTCAAGGACTGAGGCGCGTCTGCGCCGAAGGAGTAGGGTAGGGTAGTTTAC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1248 bp | 415 aa | 149 | 1396 | + | No |
AG : TnpB
ORF sequence :
MDVRRTAVVKLAVSDEQRDALHRTAEQYLYCANRTADYCWSDTSYAECKTNNREVRDALYAELREETNLQAQLVQAAIKRGVEAVKACVERWKKGQRVSQ
PTFTAETMDYDTRSATFYRNKVSLATVEGRVEPSFVLPADSPTPYERYALSEDYEFRESTLRYDATTDEFYLHISTRRIDSDDEVSEDTGHSDQTVLGID
LGVNSLAVTSTGTFWQGDDYDHWCREFEKRRGEMQQRGTQAAHNALLRLGKREEAWRKQYIHTIANELVTEAVEHDCDVIAFEDLTDIRERLPHAKWHHV
WAFRRLYEYISYKAPEQGVSVEQVEPNHTSQRCSRTDCGFTHENNRHGEHFECQKCGYEVNADYNGAKNVGLRYARKRRHRLRSSPTSGSGDAPVDVRIT
GGTLNGESYQPIAGD
PTFTAETMDYDTRSATFYRNKVSLATVEGRVEPSFVLPADSPTPYERYALSEDYEFRESTLRYDATTDEFYLHISTRRIDSDDEVSEDTGHSDQTVLGID
LGVNSLAVTSTGTFWQGDDYDHWCREFEKRRGEMQQRGTQAAHNALLRLGKREEAWRKQYIHTIANELVTEAVEHDCDVIAFEDLTDIRERLPHAKWHHV
WAFRRLYEYISYKAPEQGVSVEQVEPNHTSQRCSRTDCGFTHENNRHGEHFECQKCGYEVNADYNGAKNVGLRYARKRRHRLRSSPTSGSGDAPVDVRIT
GGTLNGESYQPIAGD
Blast result :
Comments
ISHwa28 is 70% (TnpB) aa similar to ISNph21.
References
1] Friedhelm Pfeiffer (2012) Direct submission.
2] Bolhuis, H., Palm, P., Wende, A., Falb, M., Rampp, M., Rodriguez-Valera, F., Pfeiffer, F., and Oesterhelt, D. (2006) BMC Genomics 7, 169.
2] Bolhuis, H., Palm, P., Wende, A., Falb, M., Rampp, M., Rodriguez-Valera, F., Pfeiffer, F., and Oesterhelt, D. (2006) BMC Genomics 7, 169.