ISNamo25

  • Family IS200/IS605
  • Group IS1341
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
HF582854 ND Natronomonas moolapensis
Natronomonas moolapensis 8.8.11
DNA section
IS Length : 1529 bp

Ends


Left end : CTGGAATTAGGCGCTAAGTCCCCTTCCTCAAGGAGCAACGCAAGGAGCGAAGCGACCGAGTAGCGCAGTAGGGAGGGGATACAGCGCCGCACGGTTCTCA II struct. : Yes
Right end : TCCCTGTGGACACCGTTGTGTCTGCAAAGTGCGTCGTGGAAGCAGGAAGCCCCTGCCTCAAGGAGCAGCCGAAGGCGGCGAGTAGGCAGGGGTAGTTCAC II struct. : Yes

Insertion site


Left flankLE cleavage siteRight flankRE cleavage site
GCCTGCGTTCAATTAAAAGGTCTATAGGtcac

DNA sequence

CTGGAATTAGGCGCTAAGTCCCCTTCCTCAAGGAGCAACGCAAGGAGCGAAGCGACCGAGTAGCGCAGTAGGGAGGGGATACAGCGCCGCACGGTTCTCA
AACACGTTCGTCGCCCGGCCCACGTAATCACAACTCTTATTTGTGTATTTTGTGTATAATATGTTGTGACAACGCGCAAGAACATCTCCATCCGAGACGA
CCAAGAGGAGTGGATACAGGAGAACCACCTGAATCTCTCCTCGTTCGTCCAAGAGAAACTGGACGAACTTATCGAGGAACGAGACTCATAGATGCACTAC
AACTACAAGTATCGGCTCGACCCACCGGAAGCCCTCGCGGAGACGCTTCTGCACCACGTCGATACTTGTAGGCAACTCTATAACCACGTCCTCTACAAAC
TCAACGAGTCAGACGAGATTCCCGCCCGCTACAAGGTACAGGGCACACTCCCCGACCTCAAATCGTGGTGGGACGACCTCGGAGACGTTCACTCGAAGGT
GTTGCAGATGGTCGTCAAGCGCGTTTACGATAATCTCTCCACACTCAAGGCGAAGAAGGAGAACGGACGTGCCGTGAGAATGCTCAAGTGGAAACCGCCT
CGGGATTACCAGTCGTTCACCTACAACCAGTCCGGCTTCAAACTCAAGAATACGAGTGGTCGGCCTGTCCTGTGGTTGAGCAAAATCGGAGAAATACCGA
TTCACCTCCACCGAGACATTCCTGAGAACGCGACCATCAAACAGGTCACAGTCAAGCAGGAACCGACGGGTGAGTGGTTCGCCACATTCGGTATCAACGT
GGACGAAGCAACGCCTGAGAAACCGGAGACACCCGAGAAAGTCGTCGGGATTGACGTAGGCATCCTGAAGTACGCTCACGACACCGACGGGTACGCTATC
GAGAGTCCTGACTTCAGCGACGAGCGTGAGCGGTTGGAACGCGCACAGCGCACCCTCTCGCGGAAACAGCACGGCTCAGCGAATTGGGAGAAACAACGCC
GGGTCGTGGCCGAACGACACGTCGAATTGAAGAACAAGCGCCGTGACTTCCTCCACAAACTCTCGAACTACTACGCCCGCGAATACGACCTTGTGGCCGT
AGAGAATTTGGACGCGAAGGGTTTGGTGGAACTACCGGGCAACTCGCGCAACCGTGCGGGTGCGGCGTGGGGGACGTTCCTGCGGATGCTCGAATACAAG
TGTGAACGCGAAGGAACGCATTTCGTCGCCGTGACCCCTCGTGGAACGACGAAAGAGTGTGCATCCTGCGGCGTTTCGACTGACAAACCGCTTTGGGTGC
GCGAACATTCATGTCCGTCGTGTGGGTTCGAGATGGACAGAGATGCGAACGCGGCGTGGAACATTCTTTCTCGCGGCCTCGAAGACGTAGGAGTGGGATA
CTCCGAATCAACGCCTGTGGAGACTGCGCTCCCTGTGGACACCGTTGTGTCTGCAAAGTGCGTCGTGGAAGCAGGAAGCCCCTGCCTCAAGGAGCAGCCG
AAGGCGGCGAGTAGGCAGGGGTAGTTCAC
Protein section
ORF number : 2

 

ORF 1
LengthBeginEndStrandFusion ORF
126 bp41 aa166291+No
ORF function : Passenger Gene
Annotation : Hypothetical proteinDescription :

ORF sequence :

MTTRKNISIRDDQEEWIQENHLNLSSFVQEKLDELIEERDS

 

Blast result :
ORF 2
LengthBeginEndStrandFusion ORF
1233 bp410 aa2921524+No
ORF function : Accessory Gene
AG : TnpB

ORF sequence :

MHYNYKYRLDPPEALAETLLHHVDTCRQLYNHVLYKLNESDEIPARYKVQGTLPDLKSWWDDLGDVHSKVLQMVVKRVYDNLSTLKAKKENGRAVRMLKW
KPPRDYQSFTYNQSGFKLKNTSGRPVLWLSKIGEIPIHLHRDIPENATIKQVTVKQEPTGEWFATFGINVDEATPEKPETPEKVVGIDVGILKYAHDTDG
YAIESPDFSDERERLERAQRTLSRKQHGSANWEKQRRVVAERHVELKNKRRDFLHKLSNYYAREYDLVAVENLDAKGLVELPGNSRNRAGAAWGTFLRML
EYKCEREGTHFVAVTPRGTTKECASCGVSTDKPLWVREHSCPSCGFEMDRDANAAWNILSRGLEDVGVGYSESTPVETALPVDTVVSAKCVVEAGSPCLK
EQPKAASRQG

 

Blast result :
Comments
ISNamo25 is 80% (TnpB) aa similar to ISHbo4. The first ORF is a passenger gene annotated as uncharacterized protein.
References
1] Dyall-Smith, M.L., Pfeiffer, F., Oberwinkler, T., Klee, K., Rampp, M., Palm, P., Gross, K., Schuster, S.C., Oesterhelt, D. Genome Announc. (2013) 1: e0009513