ISNamo25
- Family IS200/IS605
- Group IS1341
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
HF582854 | ND | Natronomonas moolapensis | Natronomonas moolapensis 8.8.11 |
DNA section
IS Length : 1529 bp
Ends
Left end : CTGGAATTAGGCGCTAAGTCCCCTTCCTCAAGGAGCAACGCAAGGAGCGAAGCGACCGAGTAGCGCAGTAGGGAGGGGATACAGCGCCGCACGGTTCTCA II struct. : Yes
Right end : TCCCTGTGGACACCGTTGTGTCTGCAAAGTGCGTCGTGGAAGCAGGAAGCCCCTGCCTCAAGGAGCAGCCGAAGGCGGCGAGTAGGCAGGGGTAGTTCAC II struct. : Yes
Insertion site
Left flank | LE cleavage site | Right flank | RE cleavage site |
---|---|---|---|
GCCTGCGTTCAA | TTAA | AAGGTCTATAGG | tcac |
DNA sequence
CTGGAATTAGGCGCTAAGTCCCCTTCCTCAAGGAGCAACGCAAGGAGCGAAGCGACCGAGTAGCGCAGTAGGGAGGGGATACAGCGCCGCACGGTTCTCA
AACACGTTCGTCGCCCGGCCCACGTAATCACAACTCTTATTTGTGTATTTTGTGTATAATATGTTGTGACAACGCGCAAGAACATCTCCATCCGAGACGA
CCAAGAGGAGTGGATACAGGAGAACCACCTGAATCTCTCCTCGTTCGTCCAAGAGAAACTGGACGAACTTATCGAGGAACGAGACTCATAGATGCACTAC
AACTACAAGTATCGGCTCGACCCACCGGAAGCCCTCGCGGAGACGCTTCTGCACCACGTCGATACTTGTAGGCAACTCTATAACCACGTCCTCTACAAAC
TCAACGAGTCAGACGAGATTCCCGCCCGCTACAAGGTACAGGGCACACTCCCCGACCTCAAATCGTGGTGGGACGACCTCGGAGACGTTCACTCGAAGGT
GTTGCAGATGGTCGTCAAGCGCGTTTACGATAATCTCTCCACACTCAAGGCGAAGAAGGAGAACGGACGTGCCGTGAGAATGCTCAAGTGGAAACCGCCT
CGGGATTACCAGTCGTTCACCTACAACCAGTCCGGCTTCAAACTCAAGAATACGAGTGGTCGGCCTGTCCTGTGGTTGAGCAAAATCGGAGAAATACCGA
TTCACCTCCACCGAGACATTCCTGAGAACGCGACCATCAAACAGGTCACAGTCAAGCAGGAACCGACGGGTGAGTGGTTCGCCACATTCGGTATCAACGT
GGACGAAGCAACGCCTGAGAAACCGGAGACACCCGAGAAAGTCGTCGGGATTGACGTAGGCATCCTGAAGTACGCTCACGACACCGACGGGTACGCTATC
GAGAGTCCTGACTTCAGCGACGAGCGTGAGCGGTTGGAACGCGCACAGCGCACCCTCTCGCGGAAACAGCACGGCTCAGCGAATTGGGAGAAACAACGCC
GGGTCGTGGCCGAACGACACGTCGAATTGAAGAACAAGCGCCGTGACTTCCTCCACAAACTCTCGAACTACTACGCCCGCGAATACGACCTTGTGGCCGT
AGAGAATTTGGACGCGAAGGGTTTGGTGGAACTACCGGGCAACTCGCGCAACCGTGCGGGTGCGGCGTGGGGGACGTTCCTGCGGATGCTCGAATACAAG
TGTGAACGCGAAGGAACGCATTTCGTCGCCGTGACCCCTCGTGGAACGACGAAAGAGTGTGCATCCTGCGGCGTTTCGACTGACAAACCGCTTTGGGTGC
GCGAACATTCATGTCCGTCGTGTGGGTTCGAGATGGACAGAGATGCGAACGCGGCGTGGAACATTCTTTCTCGCGGCCTCGAAGACGTAGGAGTGGGATA
CTCCGAATCAACGCCTGTGGAGACTGCGCTCCCTGTGGACACCGTTGTGTCTGCAAAGTGCGTCGTGGAAGCAGGAAGCCCCTGCCTCAAGGAGCAGCCG
AAGGCGGCGAGTAGGCAGGGGTAGTTCAC
AACACGTTCGTCGCCCGGCCCACGTAATCACAACTCTTATTTGTGTATTTTGTGTATAATATGTTGTGACAACGCGCAAGAACATCTCCATCCGAGACGA
CCAAGAGGAGTGGATACAGGAGAACCACCTGAATCTCTCCTCGTTCGTCCAAGAGAAACTGGACGAACTTATCGAGGAACGAGACTCATAGATGCACTAC
AACTACAAGTATCGGCTCGACCCACCGGAAGCCCTCGCGGAGACGCTTCTGCACCACGTCGATACTTGTAGGCAACTCTATAACCACGTCCTCTACAAAC
TCAACGAGTCAGACGAGATTCCCGCCCGCTACAAGGTACAGGGCACACTCCCCGACCTCAAATCGTGGTGGGACGACCTCGGAGACGTTCACTCGAAGGT
GTTGCAGATGGTCGTCAAGCGCGTTTACGATAATCTCTCCACACTCAAGGCGAAGAAGGAGAACGGACGTGCCGTGAGAATGCTCAAGTGGAAACCGCCT
CGGGATTACCAGTCGTTCACCTACAACCAGTCCGGCTTCAAACTCAAGAATACGAGTGGTCGGCCTGTCCTGTGGTTGAGCAAAATCGGAGAAATACCGA
TTCACCTCCACCGAGACATTCCTGAGAACGCGACCATCAAACAGGTCACAGTCAAGCAGGAACCGACGGGTGAGTGGTTCGCCACATTCGGTATCAACGT
GGACGAAGCAACGCCTGAGAAACCGGAGACACCCGAGAAAGTCGTCGGGATTGACGTAGGCATCCTGAAGTACGCTCACGACACCGACGGGTACGCTATC
GAGAGTCCTGACTTCAGCGACGAGCGTGAGCGGTTGGAACGCGCACAGCGCACCCTCTCGCGGAAACAGCACGGCTCAGCGAATTGGGAGAAACAACGCC
GGGTCGTGGCCGAACGACACGTCGAATTGAAGAACAAGCGCCGTGACTTCCTCCACAAACTCTCGAACTACTACGCCCGCGAATACGACCTTGTGGCCGT
AGAGAATTTGGACGCGAAGGGTTTGGTGGAACTACCGGGCAACTCGCGCAACCGTGCGGGTGCGGCGTGGGGGACGTTCCTGCGGATGCTCGAATACAAG
TGTGAACGCGAAGGAACGCATTTCGTCGCCGTGACCCCTCGTGGAACGACGAAAGAGTGTGCATCCTGCGGCGTTTCGACTGACAAACCGCTTTGGGTGC
GCGAACATTCATGTCCGTCGTGTGGGTTCGAGATGGACAGAGATGCGAACGCGGCGTGGAACATTCTTTCTCGCGGCCTCGAAGACGTAGGAGTGGGATA
CTCCGAATCAACGCCTGTGGAGACTGCGCTCCCTGTGGACACCGTTGTGTCTGCAAAGTGCGTCGTGGAAGCAGGAAGCCCCTGCCTCAAGGAGCAGCCG
AAGGCGGCGAGTAGGCAGGGGTAGTTCAC
Protein section
ORF number : 2
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
126 bp | 41 aa | 166 | 291 | + | No |
Annotation : Hypothetical proteinDescription :
ORF sequence :
MTTRKNISIRDDQEEWIQENHLNLSSFVQEKLDELIEERDS
Blast result :ORF 2
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1233 bp | 410 aa | 292 | 1524 | + | No |
AG : TnpB
ORF sequence :
MHYNYKYRLDPPEALAETLLHHVDTCRQLYNHVLYKLNESDEIPARYKVQGTLPDLKSWWDDLGDVHSKVLQMVVKRVYDNLSTLKAKKENGRAVRMLKW
KPPRDYQSFTYNQSGFKLKNTSGRPVLWLSKIGEIPIHLHRDIPENATIKQVTVKQEPTGEWFATFGINVDEATPEKPETPEKVVGIDVGILKYAHDTDG
YAIESPDFSDERERLERAQRTLSRKQHGSANWEKQRRVVAERHVELKNKRRDFLHKLSNYYAREYDLVAVENLDAKGLVELPGNSRNRAGAAWGTFLRML
EYKCEREGTHFVAVTPRGTTKECASCGVSTDKPLWVREHSCPSCGFEMDRDANAAWNILSRGLEDVGVGYSESTPVETALPVDTVVSAKCVVEAGSPCLK
EQPKAASRQG
KPPRDYQSFTYNQSGFKLKNTSGRPVLWLSKIGEIPIHLHRDIPENATIKQVTVKQEPTGEWFATFGINVDEATPEKPETPEKVVGIDVGILKYAHDTDG
YAIESPDFSDERERLERAQRTLSRKQHGSANWEKQRRVVAERHVELKNKRRDFLHKLSNYYAREYDLVAVENLDAKGLVELPGNSRNRAGAAWGTFLRML
EYKCEREGTHFVAVTPRGTTKECASCGVSTDKPLWVREHSCPSCGFEMDRDANAAWNILSRGLEDVGVGYSESTPVETALPVDTVVSAKCVVEAGSPCLK
EQPKAASRQG
Blast result :
Comments
ISNamo25 is 80% (TnpB) aa similar to ISHbo4. The first ORF is a passenger gene annotated as uncharacterized protein.
References
1] Dyall-Smith, M.L., Pfeiffer, F., Oberwinkler, T., Klee, K., Rampp, M., Palm, P., Gross, K., Schuster, S.C., Oesterhelt, D. Genome Announc. (2013) 1: e0009513