ISAba26

  • Family IS256
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
CP007712 ND Acinetobacter baumannii
Acinetobacter baumannii MDR-ZJ06
Acinetobacter baumannii LAC-4
Acinetobacter baumannii AB0057
Acinetobacter baumannii AB031
Acinetobacter baumannii AC29
Acinetobacter baumannii AC30
Acinetobacter baumannii AC12
Acinetobacter baumannii PKAB07
Acinetobacter baumannii BJAB07104
Acinetobacter baumannii TYTH-1
Acinetobacter baumannii MDR-TJ
DNA section
IS Length : 1318 bp

Ends


IR Length : 19/26

IRL : GAGCCTGTAAATTATTTTGTGTAAGTTCCATTTTTTATAAATGATCTTTT
IRR : GGGACTGTTCTAAATTTTGTGTAAGTACTTAATTTTCATTTATCCTTCAG

Insertion site


Left flankDirect repeatRight flankDR Length
GTGAAAAAATAACAAATGAAAAAGGCCT8
CAGTTGGGCTAGCTGGTATGAAAATTTC8
ATCGGTTTTATGAATGAAAAATTTATTC8

DNA sequence

GAGCCTGTAAATTATTTTGTGTAAGTTCCATTTTTTATAAATGATCTTTTAATCGATCATCGAACTGAATCGTAAACCAATTCATTGCTAAACGCCAATT
TTGAATTGGCATCGTCCATTTCTTCGCAGCATTTGATGTTGCTAAGTAAATGACCTTCTTTACTGAGTCATCAGATGAAAAGATTTTCCTTTTCTTCGTT
GAATGGCGTATTACGCTATTCAACGACTCAATCGCATTTGTTGTATAAATAGCATGACGTATTTCGGCTGGATAGCTAAAGATCGTTCGGATATTTTCCC
AATTGGCCCGCCAGGATTCTCCAATTTTGGGATACTGGTGATTCCATTGATCACAGAAGATGTCTAGGGACTTTAAAGCATTTTCCTCTGTACTTGCCTG
ATAAATCGCTTTCAGACCCGACGTAACAGCCTTGTAGTCTTTCCAGCTTACAAATCTCAGGCTATTGCGTACAACATGCACAATACACAGTTGAATATCA
GTATGAGGGTAAACAGAGGCTATCGCGTCAGGAAAGCCTTTTAATCCATCTACACAGGCAACAAGAATGTCCTGTACTCCTCGATTTTTTAGCTCTGTCA
TGACTGACAGCCAGAATTTGGCACCTTCTGTCTGAGCAATCCACATACCCAGTAATTCTTTTTGCCCATCCATATTGATGCCTAAAGCAAGGTATACGGA
CTTGTTAATCACATTGGAGTGCTGACGGACTTTGACAACAATACAGTCAAGATAGACAACAGGATAAAGGCTATCTAAGGCTCTATTTTGCCACTCAGTC
ACTTGCTCAATCACAGCATCGGTAACTTTGCTGATGAGAGATGCTGACACATCGGCATCGTACATTTCTTTGAAGAAGGCTACAATTTCCCTATTAGTCA
TTCCTTTTGCATACAGTGAGAGGATTTGGTCATCCATACTGGTGATGCGTGTTTGGTGCTTTTTGATAATTTGTGGCTCAAATGAACCTTCTCGATCACG
GGGAATATCTAAAGCCAGTTGTCCATCTTGAGTTGTAATGGTTTTAGAACTAAACCCATTACGGCTATTTGAGCCTTTCTTGGGCTGATGCTTTTCATAA
CCGAGATGGTCTGAAAGTTCAGTATTGAGTGCAGTTTCAATCATGAATTTTTTAAAGACTGCTGTCATTTGGTTTAAGTCTTCTGGTGTTTTTAGACCTT
TAGCCAATTCGGCAGCCATACTTTTGATTGTTGCTTCATCCATGTGAAGTACCTTTTGTAATTATCCTCTGAAGGATAAATGAAAATTAAGTACTTACAC
AAAATTTAGAACAGTCCC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1209 bp402 aa761284+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MDEATIKSMAAELAKGLKTPEDLNQMTAVFKKFMIETALNTELSDHLGYEKHQPKKGSNSRNGFSSKTITTQDGQLALDIPRDREGSFEPQIIKKHQTRI
TSMDDQILSLYAKGMTNREIVAFFKEMYDADVSASLISKVTDAVIEQVTEWQNRALDSLYPVVYLDCIVVKVRQHSNVINKSVYLALGINMDGQKELLGM
WIAQTEGAKFWLSVMTELKNRGVQDILVACVDGLKGFPDAIASVYPHTDIQLCIVHVVRNSLRFVSWKDYKAVTSGLKAIYQASTEENALKSLDIFCDQW
NHQYPKIGESWRANWENIRTIFSYPAEIRHAIYTTNAIESLNSVIRHSTKKRKIFSSDDSVKKVIYLATSNAAKKWTMPIQNWRLAMNWFTIQFDDRLKD
HL

 

Blast result :
Comments
ISAba26 is 85% aa similar to ISEc39.


References
1] Ou HY, Kuang SN, He X, Molgora BM, Ewing PJ, Deng Z, Osby M, Chen W, Xu HH (2015) Sci Rep. 2015 Mar 2;5:8643