TnAs1
- Family Tn3
- Group
Isoform Synonym(s)
| Accession number | Transposition | Origin | Host |
|---|---|---|---|
| CP022426 | ND | Aeromonas salmonicida | Aeromonas salmonicida Aeromonas salmonicida subsp. pectinolytica 34mel |
DNA section
IS Length : 6694 bp
Ends
IR Length : 34/41
IRL : GGGGACGATAGAGAATTCGGAAAAAATCGTACGCTAAGCTTCGCGAGTTC
IRR : GGGGAGCCCGCAGAATTCGGAAAAAATCGTACGCTAAGGTTTTCCGGGCA
Insertion site
| Left flank | Direct repeat | Right flank | DR Length |
|---|---|---|---|
| TCTCGCTGAA | TATTAGCGTA | 0 |
DNA sequence
GGGGACGATAGAGAATTCGGAAAAAATCGTACGCTAAGCTTCGCGAGTTCTTGTAACCAATTCATTGTTTTTTCAATGGATGAAAGAAAATGGCGAAAGC
TATTTGACAAACAAATCGGGATCTTATAACTTACCTACCAAGTAGTCGGTAGATGAAATAAAGCCATGAAACTCAATTCAGATCTTTCGCAGCGTGTTGT
CGTCGAGCCTTCAAGCTTACAGTGGGTCGATTCGCCAGCGACCGGGATTCAACGCCAGTTACTGGAGCGTGATGGCGACGAAGTGGCGCGTGCCACCTCG
ATCGTGCGATACGCGCCGGGCTCCGCTTTTGAAAATCATAAGCACGACTTGGGCGAGGAGATTCTGGTCCTGGACGGCGAATTCAGCGACGAATCCGGGA
CCTTCGGGCCTGGGACTTACATCAAGAATCCACCAGGTTCTTCGCATGCACCGAGCTCCGCGACGGGTTGCACGTTGTTCGTCAAGCTGCGCCATCTTGA
TCTAGCCGACAGCCAACGCACCGTGGTCGACACCCGTAACGGCCCCTGGTTTCCAGGCCTCGTGCCGGGTCTGTCGGTGATGCCACTTTCTGAGTTCGAC
ACACAACATACGGCTTTGGTGCGCTGGGCCCCGGGGACACGATTCAATTCGCATCGTCACTACGGCGGTGAAGAAATCTATGTGTTGGAAGGCGTCTTTG
AGGATGAGTTCGGAAGCTACCCTACCGGCACATGGATGCGCAGTCCGCATTTGAGTGCTCACCGTCCCTTCAGCAATACAGGCTGCACCATCCTGGTCAA
GACAGGCCACCTGCCAGTCGCCGAATCAAATGAGGCGCTTGCATGAAGCATTTCTCCGAAATCTCGCCGACCGCCGAGCGGGTGGTCGATGCCGCTGAAG
GGTTGGTACAGCAGCACGGCTACAACGGCTTCTCATACGATGACGTGGCCCAGTTGGTAGGCATCAAAAAACCAAGTATCCACCACCACTTTCCCAAGAA
GGGTGAACTCGTGGCCGTGGTCGCACAGCGCTACACGCACCGGTTTCGTGAGGAGTTGCTGAGCATCGAAGGGCAGCATGCGAAAGCGCCTGACAGGCTA
ACTGCGTATGCGGCACTTTTCGAACGCACCTTCGCCAAGGACCGGCGCCTTTGTGTCTGCGGCATGTTGGGTGCCGAGTCGGACTCGCTGCCGGACGCCG
TTGTGAGCGAGGTCGAGCGATTCTTTAAAGTCAATCTCGACTGGTTGACTCTTGTCGTTGCCGATGGTCAGCGTGCCGCGCTGATCACCTCGAATTCCAC
CCCAGAGGCTCTCGCAGAGGCATTCTTGTGCGCGTTGGAAGGCTCGATGATGGTGGGCCGTGGCATGCGGTCGTCACGCGGACCGGCCGAAGTTGGAAAC
ACTTTTCTTTCCACCGTGTTGACCTGAGGTCGGCACTTTTTTTGCAACACAACCCTACCATTTAGTTGGTAGTTAAGGAGATTATTATGAGTACTGAATT
TAATGGCAAGAAGTTGTTGGTCATCGGCGGCACTAGCGGGATGGGACTGCAAACTGCCCGCATGGTTCTTGAGCAAGGCGGAAGCGTCGTCATCGTCGGT
CACCGTGAAGACAAGGCCGAAGAGGCCCGCAAGGCGCTGTCGTCGTTGGGCACCGTGACCGCCCTGACTGCCGATCTCTCGCGAGCCGAAGATGTGAAGC
GACTCCTGCATACCATCGATGAACACCACAAGGACATCAATCTTCTGGTCAACGCGGCTGGGGTGTTCTTCCCGAAGGCGTTTCTTGAGCACACGGAAAG
TGATTACGAACAATATTTGACGTTGAATAAAGCGTTCTTCTTCATCACACAAAAAGTCGTGGCCAATCTCGTGGCCAGCGAGCGTCCCGGCGCCATTGTG
AACATCGGCTCGATGTGGGGCAAGCAGGCGATTGCGGCTACGCCGTCGTCCGCGTATTCGATGGCAAAAGCAGGTTTGCATTCGCTGACCCAGCACCTTG
CGATGGAGCTGGCATCCAAACAAATCAGGGTCAATGCCGTTTCTCCGGCGGTTGTCGAAACGCCGATTTACGAGGGATTCATACCCAAGGCCGAGGTTCA
TGGCGCCTTACAGGGATTCAACAGCTTCCACCCAATCGGCAGGGTTGGGACGCCACAAGACGTCGCCGAGGTCATCCTCTTCCTGTTGTCGGACAAGGCA
GCATGGGTGACGGGCGCAATCTGGGACGTTGACGGCGGCGTGATGGCCGGGCGTAACACATAATGGGGGAACGAGAAATGAACACAAACATTAAAGGAAC
TCCCGGCAACGGGATCAACGTCGGCGCATTGCGTGAGTTTGCAGATCAGGTCGCAGCAAAGCCCGCCGCAGGCATCGCGACGTTCGGCGTCGTGACAACC
TGGGAGGGTGGCACCCGGACGCGTGCGCGAACCATGCCGCTCGTACTAGGTGACACGGCCTTGGCGCGCGGCTTTGTCATCGACGCGGACGAACCGGCAG
AATTGCTCGGTACCGACACGGCCGCTAATCCACAAGAATTGATCCTGGCTGCGTTGAACGCATGCATGACTGCAACCTACGCGGCAAATGCGGCGGCAAT
GAACATCGAGTTGCAATCGCTGACTATCCGCACGAAGGGAAGCCTCGATCTGAGAGGTTTTCTTGGAATCGATCCTGGGATCAATCCAGGGTACGACCAG
GTCGAGTATGAGGTCGAAATGGAGTCGTCGGCGGATTCGGCGGCGCTGAAAGCATTGCACGCGCAGGTGCAGCGAACATCGCCGAATTACCACAACTTCG
CGAGAGCCATTGATCTCAAGGCCAAGCTGACCATTCTCCAATGATCGAGTCAGTGTTTCCCGTGGTTGGCTGACGGGAGGCCAAACCAGATGCGCTATGA
CGGAAGGTTCAACCTTCCGTCATCACGTTCTCTGGAATACGCAGTGTCAATTTGAGGTATACCCTAACTTGATGTCAGGCAGGGCCGCGCCGCTTCGTCA
GAATAGAGTCTGCTTTCCCATTTTTTGACACATGCCCGCGAAGGTTATAGATTTCAGCCTGACAGAAATGGGCTTTGAGGCACAACGGAACAGAAAGTGC
ACTTAAGCCGCCTTCAACCAAGGAGACATCGTGCAGGGGCACCGCATCGGCTACGTCCGGGTCAGCAGCTTTGACCAGAACCCGGAACGCCAGCTGGAAC
AAACCCAGGTGAGCAAGGTGTTCACCGACAAGGCATCGGGCAAGGACACCCAGCGCCCCCAGCTCGAAGCGCTGCTGAGCTTCGTCCGCGAAGGCGATAC
AGTGGTGGTGCACAGCATGGATCGGCTGGCCCGCAACCTCGATGACCTGCGTCGCTTGGTACAGAAGCTGACTCAGCGCGGCGTGCGCATCGAGTTCCTG
AAGGAGGGCCTGGTGTTCACTGGCGAGGACTCGCCGATGGCCAACCTGATGCTGTCGGTGATGGGGGCCTTCGCTGAGTTCGAGCGCGCCCTGATCCGCG
AGCGGCAGCGTGAGGGCATCGCCTTGGCCAAGCAGCGTGGCGCGTACCGGGGCCGCAAGAAAGCCCTGTCCGATGAGCAGGCTGCTACCCTGCGGCAGCG
AGCGACGGCCGGCGAGCCCAAGGCGCAGCTTGCCCGCGAGTTCAACATCAGCCGGGAAACCCTCTACCAGTACCTCCGCACGGACGACTGACACATGCCG
CGTCGCTTGATCCTCTCGGCCACGGAGCGGGACACCCTGCTTGCGCTGCCGGAAAGCCAGGATGACCTGATCCGCTACTACACCTTCAACGACTCCGACC
TGTCGCTGATCCGCCAGCGACGCGGCGACGCCAACCGCCTCGGCTTCGCCGTGCAGCTCTGCCTGCTGCGCTACCCCGGTTACGCGCTGGGAACCGACAG
CGAGCTGCCCGAGCCGGTCATCCTGTGGGTGGCGAAGCAAGTCCAGGCCGAGCCGGCGAGCTGGGCAAAGTACGGCGAGCGCGACGTGACCCGTCGCGAG
CATGCCCAGGAACTGCGCACCTACCTGCAACTGGCCCCGTTCGGCCTGTCCGACTTCCGCGCCCTGGTGCGCGAGCTAACCGAGCTGGCCCAGCAGACCG
ACAAAGGCTTGCTGCTGGCCGGTCAGGCCCTGGAGAGCCTACGGCAGAAACGACGCATCCTGCCGGCGCTGAGCGTGATTGACCGGGCCTGCTCGGAAGC
CATTGCGCGAGCCAATCGGCGGGTCTACCGCGCCCTGGTCGAACCACTCACGGACTCGCATCGGGCCAAGCTGGACGAGCTGTTGAAGCTCAAGGCCGGC
AGCAGCATCACCTGGTTGACCTGGCTGCGCCAGGCACCGCTGAAACCCAACTCTCGGCACATGCTGGAACACATCGAGCGGCTGAAGACATTTCAGTTGG
TGGACTTGCCCGAAGGCCTGGGCCGGCACATCCACCAGAACCGCCTGCTCAAGCTGGCCCGCGAGGGTGGGCAGATGACGCCCAAAGACCTCGGTAAGTT
CGAGCCGCAGCGCCGCTACGCGACCCTGGCCGCCGTGGTGCTGGAGAGCACCGCGACCGTGATCGATGAGCTGGTCGATCTGCATGACCGCATCCTGGTC
AAGCTGTTCAGCGGCGCGAAGCACAAGCATCAGCAGCAGTTCCAGAAGCAGGGCAAGGCGATCAACGACAAGGTGCGCCTGTACTCCAGGATCGGCCAGG
CGCTGCTGGAAGCGAAGGAAAGCGGCAGCGACCCCTATGCCGCCATCGAGGCGGTGATTCCCTGGGACGAGTTCACCGAGAGCGTCAGCGAGGCCGAGCT
GCTGGCCCGGCCGGAAGGCTTCGACCACCTGCACCTGGTCGGCGAGAACTTCGCCACCCTGCGCCGTTACACGCCGGCCTTGCTGGAGGTGCTGGAACTG
CGCGCCGCGCCGGCCGCGCAAGGCGTGCTGGCAGCCGTGCAGACCCTGCGTGAGATGAACGCCGACAACCTGCGCAAGGTGCCGGCCGATGCACCCACGG
CCTTCATCAAGCCGCGCTGGAAGCCGCTGGTGATCACCCCGGAAGGCCTCGACCGGAAATTCTACGAAATCTGCGCCCTGTCCGAGCTGAAGAACGCCCT
GCGCTCCGGCGACATCTGGGTCAAGGGCTCGCGGCAGTTCCGCGACTTCGACGACTACCTGCTGCCGGCCGAGAAGTTCGCCGCACTCAAGCGCGAGCAG
GCCCTGCCCCTGGCGATCAACCCGAACAGCGACCAGTACCTGGAAGAGCGTTTGCAGCTGCTGGACGAGCAGTTGGCCACCGTCACCCGCCTGGCCAAGG
ACAACGAGCTGCCCGATGCCATCCTCACCGAGTCAGGGCTGAAAATCACCCCGCTGGATGCGGCGGTGCCGGATCGGGCGCAGGCGCTGATCGACCAAAC
CAGCCAGTTACTGCCGCGCATCAAGATCACCGAACTGCTGATGGACGTGGACGACTGGACGGGCTTCAGCCGCCACTTCACCCACTTGAAGGACGGGGCC
GAGGCCAAAGACAGGACGTTGCTGCTGTCCGCAATCCTCGGTGATGCGATCAACCTCGGGCTGACCAAGATGGCCGAGTCGAGCCCCGGCCTGACCTACG
CCAAGCTGTCCTGGCTGCAAGCCTGGCACATCCGCGACGAAACCTATTCGGCGGCCTTGGCCGAGCTGGTCAACCACCAGTATCGCCACGCCTTTGCCGC
CCACTGGGGCGACGGCACGACCTCATCCTCCGATGGCCAGCGCTTCCGCGCGGGTGGCCGGGGCGAGAGCACCGGGCACGTCAACCCGAAGTACGGTAGC
GAGCCGGGACGGCTGTTCTATACCCATATCTCCGACCAGTACGCGCCGTTCAGCACCCGCGTGGTGAATGTCGGCGTCCGCGATTCCACCTATGTGCTCG
ACGGCCTGCTGTACCACGAGTCCGACCTGCGGATCGAGGAGCACTACACCGACACGGCCGGCTTCACCGATCACGTCTTTGCCCTGATGCACCTGCTAGG
CTTCCGCTTCGCGCCGCGCATCCGCGACCTCGGCGAAACCAAGCTGTACGTGCCGCAGGGCGTGCAAGCCTACCCGACGTTGCGCCCGCTGATCGGCGGC
ACCCTGAACATCAAGCACGTGCGTGCCCACTGGGACGACATCCTGCGCCTGGCCAGCTCGATCAAGCAGGGCACCGTCACCGCCTCGCTGATGCTGCGCA
AGCTCGGCAGCTACCCGCGCCAGAACGGACTGGCCGTGGCCCTGCGCGAGCTGGGCCGGATCGAGCGCACGCTGTTCATCCTGGACTGGCTGCAAAGTGT
TGAACTGCGCCGCCGCGTGCATGCCGGCCTGAACAAAGGTGAGGCGCGCAACTCGCTGGCCAGGGCGGTGTTCTTCAACCGCCTTGGGGAAATCAGGGAT
CGGAGCTTCGAGCAGCAGCGCTACCGGGCCAGCGGCCTCAACCTGGTGACGGCGGCTATCGTGCTGTGGAACACGGTGTACCTGGAACGCGCCACCCAGG
GGTTGGTCGAGGCCGGCAAGCCGGTGGACGGCGAGCTGCTGCAATTCCTGTCGCCGCTGGGCTGGGAGCACATCAACCTAACCGGCGATTACGTCTGGCG
GCAGAGCCGCAGACTGGAAGACGGGAAGTTTCGGCCCTTACGGATGCCCGGAAAACCTTAGCGTACGATTTTTTCCGAATTCTGCGGGCTCCCC
TATTTGACAAACAAATCGGGATCTTATAACTTACCTACCAAGTAGTCGGTAGATGAAATAAAGCCATGAAACTCAATTCAGATCTTTCGCAGCGTGTTGT
CGTCGAGCCTTCAAGCTTACAGTGGGTCGATTCGCCAGCGACCGGGATTCAACGCCAGTTACTGGAGCGTGATGGCGACGAAGTGGCGCGTGCCACCTCG
ATCGTGCGATACGCGCCGGGCTCCGCTTTTGAAAATCATAAGCACGACTTGGGCGAGGAGATTCTGGTCCTGGACGGCGAATTCAGCGACGAATCCGGGA
CCTTCGGGCCTGGGACTTACATCAAGAATCCACCAGGTTCTTCGCATGCACCGAGCTCCGCGACGGGTTGCACGTTGTTCGTCAAGCTGCGCCATCTTGA
TCTAGCCGACAGCCAACGCACCGTGGTCGACACCCGTAACGGCCCCTGGTTTCCAGGCCTCGTGCCGGGTCTGTCGGTGATGCCACTTTCTGAGTTCGAC
ACACAACATACGGCTTTGGTGCGCTGGGCCCCGGGGACACGATTCAATTCGCATCGTCACTACGGCGGTGAAGAAATCTATGTGTTGGAAGGCGTCTTTG
AGGATGAGTTCGGAAGCTACCCTACCGGCACATGGATGCGCAGTCCGCATTTGAGTGCTCACCGTCCCTTCAGCAATACAGGCTGCACCATCCTGGTCAA
GACAGGCCACCTGCCAGTCGCCGAATCAAATGAGGCGCTTGCATGAAGCATTTCTCCGAAATCTCGCCGACCGCCGAGCGGGTGGTCGATGCCGCTGAAG
GGTTGGTACAGCAGCACGGCTACAACGGCTTCTCATACGATGACGTGGCCCAGTTGGTAGGCATCAAAAAACCAAGTATCCACCACCACTTTCCCAAGAA
GGGTGAACTCGTGGCCGTGGTCGCACAGCGCTACACGCACCGGTTTCGTGAGGAGTTGCTGAGCATCGAAGGGCAGCATGCGAAAGCGCCTGACAGGCTA
ACTGCGTATGCGGCACTTTTCGAACGCACCTTCGCCAAGGACCGGCGCCTTTGTGTCTGCGGCATGTTGGGTGCCGAGTCGGACTCGCTGCCGGACGCCG
TTGTGAGCGAGGTCGAGCGATTCTTTAAAGTCAATCTCGACTGGTTGACTCTTGTCGTTGCCGATGGTCAGCGTGCCGCGCTGATCACCTCGAATTCCAC
CCCAGAGGCTCTCGCAGAGGCATTCTTGTGCGCGTTGGAAGGCTCGATGATGGTGGGCCGTGGCATGCGGTCGTCACGCGGACCGGCCGAAGTTGGAAAC
ACTTTTCTTTCCACCGTGTTGACCTGAGGTCGGCACTTTTTTTGCAACACAACCCTACCATTTAGTTGGTAGTTAAGGAGATTATTATGAGTACTGAATT
TAATGGCAAGAAGTTGTTGGTCATCGGCGGCACTAGCGGGATGGGACTGCAAACTGCCCGCATGGTTCTTGAGCAAGGCGGAAGCGTCGTCATCGTCGGT
CACCGTGAAGACAAGGCCGAAGAGGCCCGCAAGGCGCTGTCGTCGTTGGGCACCGTGACCGCCCTGACTGCCGATCTCTCGCGAGCCGAAGATGTGAAGC
GACTCCTGCATACCATCGATGAACACCACAAGGACATCAATCTTCTGGTCAACGCGGCTGGGGTGTTCTTCCCGAAGGCGTTTCTTGAGCACACGGAAAG
TGATTACGAACAATATTTGACGTTGAATAAAGCGTTCTTCTTCATCACACAAAAAGTCGTGGCCAATCTCGTGGCCAGCGAGCGTCCCGGCGCCATTGTG
AACATCGGCTCGATGTGGGGCAAGCAGGCGATTGCGGCTACGCCGTCGTCCGCGTATTCGATGGCAAAAGCAGGTTTGCATTCGCTGACCCAGCACCTTG
CGATGGAGCTGGCATCCAAACAAATCAGGGTCAATGCCGTTTCTCCGGCGGTTGTCGAAACGCCGATTTACGAGGGATTCATACCCAAGGCCGAGGTTCA
TGGCGCCTTACAGGGATTCAACAGCTTCCACCCAATCGGCAGGGTTGGGACGCCACAAGACGTCGCCGAGGTCATCCTCTTCCTGTTGTCGGACAAGGCA
GCATGGGTGACGGGCGCAATCTGGGACGTTGACGGCGGCGTGATGGCCGGGCGTAACACATAATGGGGGAACGAGAAATGAACACAAACATTAAAGGAAC
TCCCGGCAACGGGATCAACGTCGGCGCATTGCGTGAGTTTGCAGATCAGGTCGCAGCAAAGCCCGCCGCAGGCATCGCGACGTTCGGCGTCGTGACAACC
TGGGAGGGTGGCACCCGGACGCGTGCGCGAACCATGCCGCTCGTACTAGGTGACACGGCCTTGGCGCGCGGCTTTGTCATCGACGCGGACGAACCGGCAG
AATTGCTCGGTACCGACACGGCCGCTAATCCACAAGAATTGATCCTGGCTGCGTTGAACGCATGCATGACTGCAACCTACGCGGCAAATGCGGCGGCAAT
GAACATCGAGTTGCAATCGCTGACTATCCGCACGAAGGGAAGCCTCGATCTGAGAGGTTTTCTTGGAATCGATCCTGGGATCAATCCAGGGTACGACCAG
GTCGAGTATGAGGTCGAAATGGAGTCGTCGGCGGATTCGGCGGCGCTGAAAGCATTGCACGCGCAGGTGCAGCGAACATCGCCGAATTACCACAACTTCG
CGAGAGCCATTGATCTCAAGGCCAAGCTGACCATTCTCCAATGATCGAGTCAGTGTTTCCCGTGGTTGGCTGACGGGAGGCCAAACCAGATGCGCTATGA
CGGAAGGTTCAACCTTCCGTCATCACGTTCTCTGGAATACGCAGTGTCAATTTGAGGTATACCCTAACTTGATGTCAGGCAGGGCCGCGCCGCTTCGTCA
GAATAGAGTCTGCTTTCCCATTTTTTGACACATGCCCGCGAAGGTTATAGATTTCAGCCTGACAGAAATGGGCTTTGAGGCACAACGGAACAGAAAGTGC
ACTTAAGCCGCCTTCAACCAAGGAGACATCGTGCAGGGGCACCGCATCGGCTACGTCCGGGTCAGCAGCTTTGACCAGAACCCGGAACGCCAGCTGGAAC
AAACCCAGGTGAGCAAGGTGTTCACCGACAAGGCATCGGGCAAGGACACCCAGCGCCCCCAGCTCGAAGCGCTGCTGAGCTTCGTCCGCGAAGGCGATAC
AGTGGTGGTGCACAGCATGGATCGGCTGGCCCGCAACCTCGATGACCTGCGTCGCTTGGTACAGAAGCTGACTCAGCGCGGCGTGCGCATCGAGTTCCTG
AAGGAGGGCCTGGTGTTCACTGGCGAGGACTCGCCGATGGCCAACCTGATGCTGTCGGTGATGGGGGCCTTCGCTGAGTTCGAGCGCGCCCTGATCCGCG
AGCGGCAGCGTGAGGGCATCGCCTTGGCCAAGCAGCGTGGCGCGTACCGGGGCCGCAAGAAAGCCCTGTCCGATGAGCAGGCTGCTACCCTGCGGCAGCG
AGCGACGGCCGGCGAGCCCAAGGCGCAGCTTGCCCGCGAGTTCAACATCAGCCGGGAAACCCTCTACCAGTACCTCCGCACGGACGACTGACACATGCCG
CGTCGCTTGATCCTCTCGGCCACGGAGCGGGACACCCTGCTTGCGCTGCCGGAAAGCCAGGATGACCTGATCCGCTACTACACCTTCAACGACTCCGACC
TGTCGCTGATCCGCCAGCGACGCGGCGACGCCAACCGCCTCGGCTTCGCCGTGCAGCTCTGCCTGCTGCGCTACCCCGGTTACGCGCTGGGAACCGACAG
CGAGCTGCCCGAGCCGGTCATCCTGTGGGTGGCGAAGCAAGTCCAGGCCGAGCCGGCGAGCTGGGCAAAGTACGGCGAGCGCGACGTGACCCGTCGCGAG
CATGCCCAGGAACTGCGCACCTACCTGCAACTGGCCCCGTTCGGCCTGTCCGACTTCCGCGCCCTGGTGCGCGAGCTAACCGAGCTGGCCCAGCAGACCG
ACAAAGGCTTGCTGCTGGCCGGTCAGGCCCTGGAGAGCCTACGGCAGAAACGACGCATCCTGCCGGCGCTGAGCGTGATTGACCGGGCCTGCTCGGAAGC
CATTGCGCGAGCCAATCGGCGGGTCTACCGCGCCCTGGTCGAACCACTCACGGACTCGCATCGGGCCAAGCTGGACGAGCTGTTGAAGCTCAAGGCCGGC
AGCAGCATCACCTGGTTGACCTGGCTGCGCCAGGCACCGCTGAAACCCAACTCTCGGCACATGCTGGAACACATCGAGCGGCTGAAGACATTTCAGTTGG
TGGACTTGCCCGAAGGCCTGGGCCGGCACATCCACCAGAACCGCCTGCTCAAGCTGGCCCGCGAGGGTGGGCAGATGACGCCCAAAGACCTCGGTAAGTT
CGAGCCGCAGCGCCGCTACGCGACCCTGGCCGCCGTGGTGCTGGAGAGCACCGCGACCGTGATCGATGAGCTGGTCGATCTGCATGACCGCATCCTGGTC
AAGCTGTTCAGCGGCGCGAAGCACAAGCATCAGCAGCAGTTCCAGAAGCAGGGCAAGGCGATCAACGACAAGGTGCGCCTGTACTCCAGGATCGGCCAGG
CGCTGCTGGAAGCGAAGGAAAGCGGCAGCGACCCCTATGCCGCCATCGAGGCGGTGATTCCCTGGGACGAGTTCACCGAGAGCGTCAGCGAGGCCGAGCT
GCTGGCCCGGCCGGAAGGCTTCGACCACCTGCACCTGGTCGGCGAGAACTTCGCCACCCTGCGCCGTTACACGCCGGCCTTGCTGGAGGTGCTGGAACTG
CGCGCCGCGCCGGCCGCGCAAGGCGTGCTGGCAGCCGTGCAGACCCTGCGTGAGATGAACGCCGACAACCTGCGCAAGGTGCCGGCCGATGCACCCACGG
CCTTCATCAAGCCGCGCTGGAAGCCGCTGGTGATCACCCCGGAAGGCCTCGACCGGAAATTCTACGAAATCTGCGCCCTGTCCGAGCTGAAGAACGCCCT
GCGCTCCGGCGACATCTGGGTCAAGGGCTCGCGGCAGTTCCGCGACTTCGACGACTACCTGCTGCCGGCCGAGAAGTTCGCCGCACTCAAGCGCGAGCAG
GCCCTGCCCCTGGCGATCAACCCGAACAGCGACCAGTACCTGGAAGAGCGTTTGCAGCTGCTGGACGAGCAGTTGGCCACCGTCACCCGCCTGGCCAAGG
ACAACGAGCTGCCCGATGCCATCCTCACCGAGTCAGGGCTGAAAATCACCCCGCTGGATGCGGCGGTGCCGGATCGGGCGCAGGCGCTGATCGACCAAAC
CAGCCAGTTACTGCCGCGCATCAAGATCACCGAACTGCTGATGGACGTGGACGACTGGACGGGCTTCAGCCGCCACTTCACCCACTTGAAGGACGGGGCC
GAGGCCAAAGACAGGACGTTGCTGCTGTCCGCAATCCTCGGTGATGCGATCAACCTCGGGCTGACCAAGATGGCCGAGTCGAGCCCCGGCCTGACCTACG
CCAAGCTGTCCTGGCTGCAAGCCTGGCACATCCGCGACGAAACCTATTCGGCGGCCTTGGCCGAGCTGGTCAACCACCAGTATCGCCACGCCTTTGCCGC
CCACTGGGGCGACGGCACGACCTCATCCTCCGATGGCCAGCGCTTCCGCGCGGGTGGCCGGGGCGAGAGCACCGGGCACGTCAACCCGAAGTACGGTAGC
GAGCCGGGACGGCTGTTCTATACCCATATCTCCGACCAGTACGCGCCGTTCAGCACCCGCGTGGTGAATGTCGGCGTCCGCGATTCCACCTATGTGCTCG
ACGGCCTGCTGTACCACGAGTCCGACCTGCGGATCGAGGAGCACTACACCGACACGGCCGGCTTCACCGATCACGTCTTTGCCCTGATGCACCTGCTAGG
CTTCCGCTTCGCGCCGCGCATCCGCGACCTCGGCGAAACCAAGCTGTACGTGCCGCAGGGCGTGCAAGCCTACCCGACGTTGCGCCCGCTGATCGGCGGC
ACCCTGAACATCAAGCACGTGCGTGCCCACTGGGACGACATCCTGCGCCTGGCCAGCTCGATCAAGCAGGGCACCGTCACCGCCTCGCTGATGCTGCGCA
AGCTCGGCAGCTACCCGCGCCAGAACGGACTGGCCGTGGCCCTGCGCGAGCTGGGCCGGATCGAGCGCACGCTGTTCATCCTGGACTGGCTGCAAAGTGT
TGAACTGCGCCGCCGCGTGCATGCCGGCCTGAACAAAGGTGAGGCGCGCAACTCGCTGGCCAGGGCGGTGTTCTTCAACCGCCTTGGGGAAATCAGGGAT
CGGAGCTTCGAGCAGCAGCGCTACCGGGCCAGCGGCCTCAACCTGGTGACGGCGGCTATCGTGCTGTGGAACACGGTGTACCTGGAACGCGCCACCCAGG
GGTTGGTCGAGGCCGGCAAGCCGGTGGACGGCGAGCTGCTGCAATTCCTGTCGCCGCTGGGCTGGGAGCACATCAACCTAACCGGCGATTACGTCTGGCG
GCAGAGCCGCAGACTGGAAGACGGGAAGTTTCGGCCCTTACGGATGCCCGGAAAACCTTAGCGTACGATTTTTTCCGAATTCTGCGGGCTCCCC
Recoding section
- Recoding by frameshift
- Frame
- Type
- Experimentally demonstrated
Stimulators :
- Shine-Dalgarno sequence :
- Secondary structure :
Recoding motif :
Protein section
ORF number : 6
ORF 1
| Length | Begin | End | Strand | Fusion ORF | |
|---|---|---|---|---|---|
| 678 bp | 225 aa | 166 | 843 | + | No |
Annotation : Description :
ORF sequence :
MKLNSDLSQRVVVEPSSLQWVDSPATGIQRQLLERDGDEVARATSIVRYAPGSAFENHKHDLGEEILVLDGEFSDESGTFGPGTYIKNPPGSSHAPSSAT
GCTLFVKLRHLDLADSQRTVVDTRNGPWFPGLVPGLSVMPLSEFDTQHTALVRWAPGTRFNSHRHYGGEEIYVLEGVFEDEFGSYPTGTWMRSPHLSAHR
PFSNTGCTILVKTGHLPVAESNEALA
GCTLFVKLRHLDLADSQRTVVDTRNGPWFPGLVPGLSVMPLSEFDTQHTALVRWAPGTRFNSHRHYGGEEIYVLEGVFEDEFGSYPTGTWMRSPHLSAHR
PFSNTGCTILVKTGHLPVAESNEALA
Blast result :ORF 2
| Length | Begin | End | Strand | Fusion ORF | |
|---|---|---|---|---|---|
| 582 bp | 193 aa | 843 | 1424 | + | No |
Annotation : Description :
ORF sequence :
MKHFSEISPTAERVVDAAEGLVQQHGYNGFSYDDVAQLVGIKKPSIHHHFPKKGELVAVVAQRYTHRFREELLSIEGQHAKAPDRLTAYAALFERTFAKD
RRLCVCGMLGAESDSLPDAVVSEVERFFKVNLDWLTLVVADGQRAALITSNSTPEALAEAFLCALEGSMMVGRGMRSSRGPAEVGNTFLSTVLT
RRLCVCGMLGAESDSLPDAVVSEVERFFKVNLDWLTLVVADGQRAALITSNSTPEALAEAFLCALEGSMMVGRGMRSSRGPAEVGNTFLSTVLT
Blast result :ORF 3
| Length | Begin | End | Strand | Fusion ORF | |
|---|---|---|---|---|---|
| 774 bp | 257 aa | 1487 | 2260 | + | No |
Annotation : Description :
ORF sequence :
MSTEFNGKKLLVIGGTSGMGLQTARMVLEQGGSVVIVGHREDKAEEARKALSSLGTVTALTADLSRAEDVKRLLHTIDEHHKDINLLVNAAGVFFPKAFL
EHTESDYEQYLTLNKAFFFITQKVVANLVASERPGAIVNIGSMWGKQAIAATPSSAYSMAKAGLHSLTQHLAMELASKQIRVNAVSPAVVETPIYEGFIP
KAEVHGALQGFNSFHPIGRVGTPQDVAEVILFLLSDKAAWVTGAIWDVDGGVMAGRNT
EHTESDYEQYLTLNKAFFFITQKVVANLVASERPGAIVNIGSMWGKQAIAATPSSAYSMAKAGLHSLTQHLAMELASKQIRVNAVSPAVVETPIYEGFIP
KAEVHGALQGFNSFHPIGRVGTPQDVAEVILFLLSDKAAWVTGAIWDVDGGVMAGRNT
Blast result :ORF 4
| Length | Begin | End | Strand | Fusion ORF | |
|---|---|---|---|---|---|
| 579 bp | 192 aa | 2263 | 2841 | + | No |
Annotation : Description :
ORF sequence :
MGEREMNTNIKGTPGNGINVGALREFADQVAAKPAAGIATFGVVTTWEGGTRTRARTMPLVLGDTALARGFVIDADEPAELLGTDTAANPQELILAALNA
CMTATYAANAAAMNIELQSLTIRTKGSLDLRGFLGIDPGINPGYDQVEYEVEMESSADSAALKALHAQVQRTSPNYHNFARAIDLKAKLTILQ
CMTATYAANAAAMNIELQSLTIRTKGSLDLRGFLGIDPGINPGYDQVEYEVEMESSADSAALKALHAQVQRTSPNYHNFARAIDLKAKLTILQ
Blast result :ORF 5
| Length | Begin | End | Strand | Fusion ORF | |
|---|---|---|---|---|---|
| 558 bp | 185 aa | 3131 | 3688 | + | No |
AG : Tn3 resolvase
ORF sequence :
MQGHRIGYVRVSSFDQNPERQLEQTQVSKVFTDKASGKDTQRPQLEALLSFVREGDTVVVHSMDRLARNLDDLRRLVQKLTQRGVRIEFLKEGLVFTGED
SPMANLMLSVMGAFAEFERALIRERQREGIALAKQRGAYRGRKKALSDEQAATLRQRATAGEPKAQLAREFNISRETLYQYLRTDD
SPMANLMLSVMGAFAEFERALIRERQREGIALAKQRGAYRGRKKALSDEQAATLRQRATAGEPKAQLAREFNISRETLYQYLRTDD
Blast result :ORF 6
| Length | Begin | End | Strand | Fusion ORF | |
|---|---|---|---|---|---|
| 2964 bp | 987 aa | 3695 | 6658 | + | No |
Chemistry : DDE
ORF sequence :
MPRRLILSATERDTLLALPESQDDLIRYYTFNDSDLSLIRQRRGDANRLGFAVQLCLLRYPGYALGTDSELPEPVILWVAKQVQAEPASWAKYGERDVTR
REHAQELRTYLQLAPFGLSDFRALVRELTELAQQTDKGLLLAGQALESLRQKRRILPALSVIDRACSEAIARANRRVYRALVEPLTDSHRAKLDELLKLK
AGSSITWLTWLRQAPLKPNSRHMLEHIERLKTFQLVDLPEGLGRHIHQNRLLKLAREGGQMTPKDLGKFEPQRRYATLAAVVLESTATVIDELVDLHDRI
LVKLFSGAKHKHQQQFQKQGKAINDKVRLYSRIGQALLEAKESGSDPYAAIEAVIPWDEFTESVSEAELLARPEGFDHLHLVGENFATLRRYTPALLEVL
ELRAAPAAQGVLAAVQTLREMNADNLRKVPADAPTAFIKPRWKPLVITPEGLDRKFYEICALSELKNALRSGDIWVKGSRQFRDFDDYLLPAEKFAALKR
EQALPLAINPNSDQYLEERLQLLDEQLATVTRLAKDNELPDAILTESGLKITPLDAAVPDRAQALIDQTSQLLPRIKITELLMDVDDWTGFSRHFTHLKD
GAEAKDRTLLLSAILGDAINLGLTKMAESSPGLTYAKLSWLQAWHIRDETYSAALAELVNHQYRHAFAAHWGDGTTSSSDGQRFRAGGRGESTGHVNPKY
GSEPGRLFYTHISDQYAPFSTRVVNVGVRDSTYVLDGLLYHESDLRIEEHYTDTAGFTDHVFALMHLLGFRFAPRIRDLGETKLYVPQGVQAYPTLRPLI
GGTLNIKHVRAHWDDILRLASSIKQGTVTASLMLRKLGSYPRQNGLAVALRELGRIERTLFILDWLQSVELRRRVHAGLNKGEARNSLARAVFFNRLGEI
RDRSFEQQRYRASGLNLVTAAIVLWNTVYLERATQGLVEAGKPVDGELLQFLSPLGWEHINLTGDYVWRQSRRLEDGKFRPLRMPGKP
REHAQELRTYLQLAPFGLSDFRALVRELTELAQQTDKGLLLAGQALESLRQKRRILPALSVIDRACSEAIARANRRVYRALVEPLTDSHRAKLDELLKLK
AGSSITWLTWLRQAPLKPNSRHMLEHIERLKTFQLVDLPEGLGRHIHQNRLLKLAREGGQMTPKDLGKFEPQRRYATLAAVVLESTATVIDELVDLHDRI
LVKLFSGAKHKHQQQFQKQGKAINDKVRLYSRIGQALLEAKESGSDPYAAIEAVIPWDEFTESVSEAELLARPEGFDHLHLVGENFATLRRYTPALLEVL
ELRAAPAAQGVLAAVQTLREMNADNLRKVPADAPTAFIKPRWKPLVITPEGLDRKFYEICALSELKNALRSGDIWVKGSRQFRDFDDYLLPAEKFAALKR
EQALPLAINPNSDQYLEERLQLLDEQLATVTRLAKDNELPDAILTESGLKITPLDAAVPDRAQALIDQTSQLLPRIKITELLMDVDDWTGFSRHFTHLKD
GAEAKDRTLLLSAILGDAINLGLTKMAESSPGLTYAKLSWLQAWHIRDETYSAALAELVNHQYRHAFAAHWGDGTTSSSDGQRFRAGGRGESTGHVNPKY
GSEPGRLFYTHISDQYAPFSTRVVNVGVRDSTYVLDGLLYHESDLRIEEHYTDTAGFTDHVFALMHLLGFRFAPRIRDLGETKLYVPQGVQAYPTLRPLI
GGTLNIKHVRAHWDDILRLASSIKQGTVTASLMLRKLGSYPRQNGLAVALRELGRIERTLFILDWLQSVELRRRVHAGLNKGEARNSLARAVFFNRLGEI
RDRSFEQQRYRASGLNLVTAAIVLWNTVYLERATQGLVEAGKPVDGELLQFLSPLGWEHINLTGDYVWRQSRRLEDGKFRPLRMPGKP
Blast result :
Comments
TnAs1 ORF6 (transposase) is 96% aa similar to ISPa40 (TnPa40).
In the genome, this element is targetted by a cassette consisting of oppositely oriented terminal copies of the related elements ISApu1 and ISApu2 with an inverting 640 bp sequence.
ORFs 5 (resolvase) and 6 (transposase) are closely related to ORFs 4 and 5 of ISPa40.
ORFs 1-4 are passenger genes.
In the genome, this element is targetted by a cassette consisting of oppositely oriented terminal copies of the related elements ISApu1 and ISApu2 with an inverting 640 bp sequence.
ORFs 5 (resolvase) and 6 (transposase) are closely related to ORFs 4 and 5 of ISPa40.
ORFs 1-4 are passenger genes.
References
1] F. Pfeiffer (2015) Direct submission
2] F. Pfeiffer, M.A. Zamora-Lagos, M. Blettinger, A. Yeroslaviz, A. Dahl, S. Gruber, B.H. Habermann (2018) BMC Genomics 19 (1), 20
2] F. Pfeiffer, M.A. Zamora-Lagos, M. Blettinger, A. Yeroslaviz, A. Dahl, S. Gruber, B.H. Habermann (2018) BMC Genomics 19 (1), 20