TnAs2
- Family Tn3
- Group
Isoform Synonym(s)
| Accession number | Transposition | Origin | Host |
|---|---|---|---|
| CP022426 | ND | Aeromonas salmonicida | Aeromonas salmonicida Aeromonas salmonicida subsp. pectinolytica 34mel |
DNA section
IS Length : 8654 bp
Ends
IR Length : 37/38
IRL : GGGGTCGTCTCAGAAAACGGAAAATAAAGCACGCTAAGGCATAGCCGACC
IRR : GGGGTCGCCTCAGAAAACGGAAAATAAAGCACGCTAAGCCGGTTGCAGCG
Insertion site
| Left flank | Direct repeat | Right flank | DR Length |
|---|---|---|---|
| CTGGCGGATC | TGCAT | GGCCGACGGC | 5 |
DNA sequence
GGGGTCGTCTCAGAAAACGGAAAATAAAGCACGCTAAGGCATAGCCGACCCTGCCAGGCTTGTTCCGCCCTGTAGCGACGCGATCAGCGGGCAGGAAACA
TTCCCCTTCCGCGCATGGCAGGCGCACACCAGTTCAGACAGCACGGTTTCCATGCGCGCCAGGTCGGCCATCTTTTCGCGCACGTTCTGAAGCTTGTGCT
CGGCCAGGCTGCTGGCTTCCTCGCAGTGGGTGCCGTCGTCGAGCCGCAGCAGATCGGCTATTTCATCCAGGCTGAAGCCCAGCCGCTGGGCCGATTTCAC
GAATCGCACTCGCGTCACATCCGCCGCGCCATAGCGGCGAATGCTGCCGTAAGGCTTATCCGGTTCCGGCAGCAAGCCCTTACGCTGATAGAAGCGGATC
GTTTCCACATTGACGCCGGCCGCCTTGGCAAAAACGCCAATGGTCAGGTTCTCTAAATTGTTTTCCATATCGCTTGACTCCGTACATGAGTACGGAAGTA
AGGTTACGCTATCCAATTTAAATCCAAAAGGACAAGCGCATGTCTGAACCACAAACTGGGCGCGGCGCGCTCTTCGCCGGCGGGCTGGCCGCCATCCTCG
CCTCCGCTTGCTGCCTCGGGCCGCTGGTTCTGATCGCCTTGGGCTTCAGCGGGGCTTGGATCGGCAACCTGACCGTGCTGGAGCCGTATCGCCCGATTTT
CATCGGCGCAGCGCTGGTGGCGTTGTTCTTCGCCTGGCGGCGCATCTACCGCCCTGCGCAAGCCTGTAGGCCGGGTGAGGTCTGCGCGATTCCCCAAGTG
CGAGCGACCTACAAGCTCATTTTCTGGGTCGTGGCCGTACTGGTTCTGGTCGCGCTCGGATTTCCCTATGTCATGCCATTTTTCTACTGATCGGAGTTCA
CCATGAAGAAACTGTTTGCCTCCCTCGCCCTCGCCGCCGTTGTTGCCCCCGTGTGGGCCGCTACCCAGACCGTCACGCTGTCCGTACCGGGCATGACGTG
CTCGGCCTGTCCGATCACCGTCAAGAAGGCGATTTCCAAGGTCGATGGCGTCAGTAAAGTTGCCGTGACCTTCGAGACCCGCGAAGCGGTGGTCACCTTC
GATGATGCCAAGACCAGTGTGCAGAAGCTGACCAAGGCAACCGGGGACGCGGGCTATCCCTCCAGCGTCAAGCAGTGAGCCACTGAACCCGACCCTGGGG
CGATCATGGGACTGATCACACGCATTGCCGACAAGGCCGGCGCGCTTGGCAGTGTGGTTTCCGCGATGGGCTGCGCCGCCTGTTTTCCGGCCATCGCCAG
CTTGGGCGCGGCCATCGGGCTGGGCTTTCTACAGGAATACGAAGGCTTGTTCATTTTCACGCTGCTGCCGCTGTTCGCCGTCGTCGCTTTGCTGGCGAAT
GCACTGGGCTGGCTCAGTCATCGGCAATGGCACCGCAGCCTGCTCGGCATGATCGGGCCAGCCATCGTGTTCGCCGGAACCGTCTGGTTGCTTGGCAACT
GGTGGACAGCGCGCCTCGTATACACCGGCCTGGCCCTGATGATCGGCGTGTCGATCTGGGACTTGGTTTCACCGGCAAATCGCCGCTGCGGGCCGGATGG
CTGCGAACTCCCAGCAAAACACGGCTGACGGCGTGAGCCAGCGGCCAACACAGAAAAGGAACGATGAATGACCACCCTCAAAATCACCGGCATGACTTGC
GACTCGTGCGCAGTGCATGTCAAGGAAGCCCTGGAGAAAGTGCCAGGCGTGCAGTCGGCGAATGTCTCATATACCAAGGGCAGCGCCAAGCTCGCCGTCG
AGACCGGCACATCGCCGGACGCGTTGACTGCCGCCGTGGCCGGACTCGGTTATCGGGCCACGCTCGCCGACGCGCTCGTGCCTCCGGTGGGCGGCGGCTT
GCTCGTCAAGATGCGCGAATGGCTAGGTAGCGGCGACAAGGCTGGTGATGATGGTGGCGGATTGCATATTGCCGTTATCGGCAGCGGCGGCGCGGCGATG
GCGGCGGCGCTGAAGGCCGTCGAGCAAGGCGCGCACGTCACCCTGATCGAGCGCGGCACTATTGGCGGCACCTGCGTCAATATCGGCTGCGTGCCGTCCA
AGATCATGATCCGCGCTGCTCACATCGCCCACTTGCGTCGAGAAAGCCCGTTCGATGGCGGCATGCCGCCCACACCGCCGACGATCTTGCGCGAGCGGCT
GCTGGCCCAGCAGCAGGCGCGCGTCGATGAACTGCGCCACGCCAAATACGAAGGCATCCTGGATGACAATCCCGCCATCTCCGTGCTGCACGGCGAAGCC
CGTTTCAAGGACGGCCACAGCCTGACCGTGCAGCTCAATGGCGGCGGCGAGCGTGTGGTGACTTTCGACCGTTGCCTGATCGCCACCGGCGCGAGTCCGG
CCGTGCCGCCGATCCCCGGCCTGAAAGACACACCCTACTGGACTTCCACCGAAGCGCTGGTCAGCGACACCATTCCCGAGCGGTTGGCGGTGATCGGCTC
ATCGGTGGTGGCGCTGGAACTGGCGCAAGCTTTTGCCCGGCTGGGCAGCCAGGTCACGATCCTGGCGCGCAGCACCTTGTTCTTCCGAGAAGACCCGGCC
ATCGGCGAGGCAATCACGGCGGCGTTCCGCGCCGAAGGGATCGAGGTGCTGGAGCACACCCAGGCCAGCCAGGTCGCGCACGAGGGCGGCGAATTCGTGC
TCACCACGGCGCACGGCGAGCTGCGTGCCGACAAACTGCTGGTCGCCACCGGTCGCTCGCCCAACACGCGCAGCCTGGCGCTGGACGCGGCAGGCGTCGC
GCTCAACCTGCAAGGCGCTATCGTCATCGACGTCGGCATGCGGACCAGCACGCCGGACATCTACGCGGCCGGCGACTGCACCGACCAGCCTCAGTTCGTC
TATGTGGCGGCAGCGGCCGGCACCCGTGCGGCGATCAACATGACGGGCGGTGACGCGGCGCTTAACCTTGCCGCCATGCCTGCCGTGGTGTTCACCGATC
CGCAAGTCGCCACCGTGGGCTACAGCGAGGCAGAGGCCCAGCACGACGGGATCGAGACCGACAGTCGCACCTTGACCTTGGACAACGTGCCGCGTGCGCT
CGCCAACTTCGACACACGCGGCTTCATCAAGCTGGTCATCGAGGAAGGTAGTGGACGGCTCATCGGCGTACAGGCGGTCGCGCCGGAAGCCGGCGAACTG
ATCCAGACGGCGGTACTCGCCATCCGTAACCGGATGACCGTGCAGGAACTGGCCGACCAGTTGTTCCCCTATCTGACGATGGTCGAGGGACTGAAGCTCG
CGGCGCAGACCTTTAACAAGGATGTGAAGCAGCTTTCCTGCTGCGCCGGGTGAGAAAAAGGAGGTGTTCGATGAACGCCTACACGGTGTCCCGGCTGGCC
CTTAATGCCGGGGTGAGCGTGCACATCGTGCGCGACTACCTGCTGCGCGGACTGCTGCGGCCGGTGGCGTGCACCCCTGGCGGCTACGGCCTGTTCGACG
ATGCGGCCTTGCAACGGCTGTGCTTCGTGCGGGCTGCTTTCGAAGCGGGTATCGGTCTCGACGCGCTGGCGCGGCTGTGCCGGGCGTTGGATACCGCGGA
CGGCGACGAAGCGGCCGCGCAGCTTGCCGTGCTGCGCCAGTTCGTCGAACGTCGGCGCGAAGCATTGGCCGATCTGGAGGTGCAGTTGGCCACCATGCCG
ACCGAGCTGGTACAGCATGCGGAGAGTCTGCCATGAACAGCCCCGAGCGCTTGCCGACCGAGACACACAAGCCGTTCACCGGCTACCTGTGGGGCGCGTT
GGCCGTGCTCACCTGTCCCTGCCATTTGCCGATTCTCGCTGTGGTGCTCGCGGGGACGACGGCCGGCGCGTTCATCGGGGAGCATTGGGGTATTGCAGCC
ATCACGCTGACCGGCTTGTTTGTCCTGTCCGTGACGCGGCTGTTGCGGGTCTTCAAGGAAAGATCGTGAGCACATCACTGCCCGCCAGATGGACGGCGAC
CGAATTGGCGCAGGCGGTTGTGCGCGGGCAGTTTGAGCTGCACTACCAGCCGATTGTCGATTTGCGCAGTGACCAGATTGTCGGTGCGGAAGCCCTGTTG
CGCTGGCGTCATCCGCAGCTCGGACTTTTGCCGCCGGGCCAGTTCCTGCCCGTGGTCGAATCGTCCGGCTTGATGCCTGAAATCGGCGCTTGGGTGCTGG
GCACCGCCTGCCGCCAGATGCGCGAATGGCGGATGCTGGCATGGCAACCGTTCCGGCTCGCCGTCAATGTTTCGGCGAGCCAGGTAGGACCGGATTTCGA
CGGGTGGGTAAAGGGCGTGCTGGCTGACGCCGAGTTGCCTGCCGAGTATCTGGAAATTGAGCTGACCGAATCGGTCGCGTTCGGCAATCCGGCGATCTTC
CCAGCCCTGGAAGCCTTGCGACAGATCGGTGTGCGCTTCGCTGCCGATGACTTCGGGACGGGGTATTCCTGTCTGCAACACCTGAAGTGCTGCCCGATTA
CTAAGCTCAAGATCGACCAGTCCTTCGTCGCCGGACTCGCCGACGACCACCGCGACCGGACCATCGTGCACACCGTGATTCAGCTTGCGCACGGGCTGGG
AATGGACGTGGTGGCCGAGGGCGTGGAAACGCCGACCAGTCTCGCGCTGTTGCGGCAAGCGGAGTGCGATACGGGGCAAGGCTTCCTGTTCGCCAAGCCA
GTGCCGGCGGCGGCATTCGCCGCCTTTGTCAGTCAATGGAGGGGTGCCACCATGAATGCAAATGATCCGACTGCCACCAGTTGCTGCGTGTGCTGCAAGG
AAATCCCGCTCGACGCCGCCTTCACACCGGAAGGTGCGGAGTACGTCGAGCGCTTCTGCGGGCTGGAGTGTTATCAACGCTTCCAGGCGCGGGCAAGCAA
CGCGACCGAAACGAGCGCCGAACTGAACGCTTGCGGTTCGCCGCCGTCAGATTGAGGCATACCCTATCCTGATGTCAGGATAGACCGCCTCACAACGTCA
GAATAGAGTCGATTGTGTTATTTATTGACACATGCAGAAAAAGGTCATAGATTTCTTCCTGACATTTTCGCCCAGGGAGGCATCTTGCAGGGTCAACGCA
TCGGCTACGTCCGGGTCAGCAGCTTCGACCAGAACCCGGAACGGCAACTTGAACACGTCGAAGTCGGCAAGGTGTTCACCGACAAGGCGTCGGGCAAGGA
CACCCAGCGGCCCGAGCTTGATTCGCTGCTGGCCTTCGTACGCGAAGGCGACACCGTGGTGGTTCATAGCATGGATCGCCTGGCGCGCAACCTCGATGAC
TTGCGCCGCCTCGTGCAAAAGCTCACCAAGCGCGGCGTGCGTATCGAGTTCGTCAAGGAAAGCCTGACCTTCACCGGCGAGGATTCGCCGATGGCGAACC
TAATGCTGTCGGTCATGGGGGCGTTCGCCGAATTCGAGCGGGCCTTGATCCGCGAGCGGCAGAGGGAAGGCATCGCGCTCGCCAAACAGCGCGGAGCCTA
CCGGGGCCGCAAGAAAGCGCTGTCGCCCGAACAGGTAGCCGATCTGCGGCAGCGGGCCGCCGCCGGCGAACAAAAAGCGAAGCTGGCCCGCGAGTTTGGT
GTCAGCCGGGAGACCCTGTATCAATACTTGAGAACGGATCAGTAAATATGCCACGTCGTTCAATCCTGTCCGCCGCCGAGCGGGAAAGCCTGCTGGCGTT
GCCGGACTCCAAGGACGACCTGATCCGACATTACACATTCAGCGATAGCGACCTCTCGATCATCCGACAGCGGCGCGGGCCTGCAAATCGTTTGGGCTTT
GCAGTTCAGCTCTGTTACCTGCGTTTCCCCGGCATCATTCTTGGTGTCGATCAGCCGCCGTTCCTACCTTTACTGAAACTGGTCGCCGACCAACTCAAGG
TCGGCATCGAAAACTGGGACGAGTACGGGCAGCGGGAGCAGACCCGGCGCGAGCACCTGGTCGAGCTGCAAGCCTTGTTCGGCTTTCAGCCGTTCACCAT
GAGCCACTACCGGCAGGCCGTGCACACGCTGACCGAGCTGGCCATGCAGACCGACAAAGGCATCGTGCTGGCCAGCGCCTTGATCGAACATCTGCGGCGG
CAGTCGGTCATTCTGCCTGCCCTCAACGCCGTCGAGCGGGCGAGCGCCGAGGCAATCACCCGTGCCAACCGGCGCATCTACGATGCCTTGGCCGAACCGC
TGTCGGACGCGCATCGCCGCCGCCTCGACGACCTGCTCAAGCGCCGCGATAACGGCAAGACGACCTGGCTGGCTTGGCTGCGCCAGTCGCCCGTCAAGCC
AAACTCGCGGCACATGCTGGAACACATCGAACGCCTCAAAGCGTGGCAGACGCTCGACCTGCCTTCGGGCATCGAGCGTCTGGTTCACCAGAACCGGCTG
CTCAAGATCGCCCGCGAAGGCGGTCAGATGACGCCCGCCGACTTGGCCAAGTTCGAGCCACAGCGCCGCTACGCAACCCTGGTGGCGCTTGCCATTGAAG
GCATGGCTACCGTCACCGACGAAATCATCGACCTACACGACCGCATCTTGGGCAAGCTGTTCAACGCCGCCAAGAATAAGCATCAGCAGCAGTTCCAGGC
GTCCGGCAAGGCCATCAACGCCAAGGTGCGCCTGTACGGACGCATCGGCCAGGCGCTGATCGACGCCAAGCAGTCGGGACGCGACCCGTTCGCCGCCATC
GAGGCCGTCATGTCCTGGGATGCTTTCGCCGAGAGCGTCACCGAGGCGCAGAAGCTCGCGCAGCCCGATGACTTCGATTTTCTGCATCGCATCGGCGAGA
GCTACGCCACTTTGCGCCGTTACGCGCCGGAATTTCTTGCTGTGCTCAAGCTGCGGGCGGCGCCCGCTGCCAAGAACGTGCTCGATGCCATCGAGGTGCT
GCGCGGCATGAACACCGACAACGCCCGCAAGGTGCCCGCCGATGCCCCGACCGATTTCATTAAGCCGCGCTGGCAGAAGCTGGTGATGACCGACGCCGGC
ATCGACCGGCGCTACTACGAGCTGTGCGCGCTATCGGAGCTGAAGAACTCACTGCGCTCGGGCGACATCTGGGTGCAGGGTTCGCGCCAGTTCAAGGATT
TCGAGGACTATCTGGTGCCGCCTGCGAAGTTCGCCAGTCTCAAGCAGTCCAGTGAATTGCCGCTGGCCGTGGCCACCGACTGCGATCAGTACCTGCACGA
GCGGCTGACGCTGCTGGAAACCCAGCTCGCCACCGTCAACCGCATGGCGGCGGCCAACAACCTGCCGGACGCCATCATCACCGAGTCGGGCCTGAAAATC
ACGCCGTTGGATGCGGCGGTGCCGGACACCGCGCAGGCGTTGATCGACCAAACGGCCATGATCCTGCCGCACGTCAAGATCACCGAGCTGCTGCTTGAAG
TCGATGAGTGGACGGGCTTCACCCGGCACTTCACACACCTGAAATCGGGCGATCTGGCCAAGGACAAAAATTTGCTGCTGACCACCATCTTGGCCGACGC
GATCAACCTGGGCCTGACCAAGATGGCCGAGTCCTGCCCCGGCACGACCTACGCCAAGTTGGCTTGGCTGCAAGCCTGGCATACCCGCGACGAAACCTAT
TCGACGGCATTGGCCGAATTGGTCAACGCCCAATTCCAGCACCCGTTCGCCGGGCACTGGGGCGACGGCACCACGTCATCGTCGGACGGCCAGAACTTCC
GAACCGGCAGCAAGGCCGAGAGTACCGGGCACATCAACCCAAAATATGGCAGCAGCCCAGGACGGACTTTCTACACCCATATCTCCGACCAGTACGCGCC
GTTCCATACCAAGGTGGTCAATGTCGGCGTGCGCGATTCGACCTATGTGCTCGACGGCCTGCTGTACCACGAGTCCGACTTGCGCATCGAGGAACACTAC
ACCGACACGGCGGGCTTCACCGATCACGTCTTCGCCTTGATGCACCTGCTGGGCTTCCGCTTCGCGCCGCGCATCCGCGACTTGGGCGACACCAAGCTGT
TCATCCCCAAGGGCGAAACCAATTACGATGCACTCAAGCCGATGATTAGCAGTGACAAGCTGAACATCAAGGCGATTCGTGCCCATTGGGACGAAATCTT
GCGGCTGGCCACCTCGATCAAGCAGGGCACAGTGACGGCCTCGCTGATGCTGCGCAAGCTCGGCAGCTACCCGCGCCAGAACGGTCTGGCCGTGGCGTTG
CGCGAGCTGGGCCGCATCGAACGCACGTTGTTCATCCTGGATTGGCTACAAAGCGTGGAACTGCGCCGCCGCGTGCATGCCGGGTTGAACAAGGGCGAAG
CCCGCAACGCGCTGGCCCGCGCCGTGTTCTTCAACCGCCTTGGCGAAATCCGCGACCGCAGTTTCGAGCAGCAGCGCTACCGAGCCAGCGGCCTCAACCT
GGTGACGGCGGCCGTCGTGTTGTGGAACACGGTCTATCTGGAACGGGCTGCACATGCGCTGCGCGGCAACGGCCATGCCGTCGATGACGCGCTGTTGCAA
TATCTGTCGCCGCTCGGCTGGGAGCACATCAATCTGACCGGCGATTACCTGTGGCGCAGCAGCGCCAAGATCGGCGCAGGCAAGTTCAGGCCGTTACGAC
CGCTGCAACCGGCTTAGCGTGCTTTATTTTCCGTTTTCTGAGGCGACCCC
TTCCCCTTCCGCGCATGGCAGGCGCACACCAGTTCAGACAGCACGGTTTCCATGCGCGCCAGGTCGGCCATCTTTTCGCGCACGTTCTGAAGCTTGTGCT
CGGCCAGGCTGCTGGCTTCCTCGCAGTGGGTGCCGTCGTCGAGCCGCAGCAGATCGGCTATTTCATCCAGGCTGAAGCCCAGCCGCTGGGCCGATTTCAC
GAATCGCACTCGCGTCACATCCGCCGCGCCATAGCGGCGAATGCTGCCGTAAGGCTTATCCGGTTCCGGCAGCAAGCCCTTACGCTGATAGAAGCGGATC
GTTTCCACATTGACGCCGGCCGCCTTGGCAAAAACGCCAATGGTCAGGTTCTCTAAATTGTTTTCCATATCGCTTGACTCCGTACATGAGTACGGAAGTA
AGGTTACGCTATCCAATTTAAATCCAAAAGGACAAGCGCATGTCTGAACCACAAACTGGGCGCGGCGCGCTCTTCGCCGGCGGGCTGGCCGCCATCCTCG
CCTCCGCTTGCTGCCTCGGGCCGCTGGTTCTGATCGCCTTGGGCTTCAGCGGGGCTTGGATCGGCAACCTGACCGTGCTGGAGCCGTATCGCCCGATTTT
CATCGGCGCAGCGCTGGTGGCGTTGTTCTTCGCCTGGCGGCGCATCTACCGCCCTGCGCAAGCCTGTAGGCCGGGTGAGGTCTGCGCGATTCCCCAAGTG
CGAGCGACCTACAAGCTCATTTTCTGGGTCGTGGCCGTACTGGTTCTGGTCGCGCTCGGATTTCCCTATGTCATGCCATTTTTCTACTGATCGGAGTTCA
CCATGAAGAAACTGTTTGCCTCCCTCGCCCTCGCCGCCGTTGTTGCCCCCGTGTGGGCCGCTACCCAGACCGTCACGCTGTCCGTACCGGGCATGACGTG
CTCGGCCTGTCCGATCACCGTCAAGAAGGCGATTTCCAAGGTCGATGGCGTCAGTAAAGTTGCCGTGACCTTCGAGACCCGCGAAGCGGTGGTCACCTTC
GATGATGCCAAGACCAGTGTGCAGAAGCTGACCAAGGCAACCGGGGACGCGGGCTATCCCTCCAGCGTCAAGCAGTGAGCCACTGAACCCGACCCTGGGG
CGATCATGGGACTGATCACACGCATTGCCGACAAGGCCGGCGCGCTTGGCAGTGTGGTTTCCGCGATGGGCTGCGCCGCCTGTTTTCCGGCCATCGCCAG
CTTGGGCGCGGCCATCGGGCTGGGCTTTCTACAGGAATACGAAGGCTTGTTCATTTTCACGCTGCTGCCGCTGTTCGCCGTCGTCGCTTTGCTGGCGAAT
GCACTGGGCTGGCTCAGTCATCGGCAATGGCACCGCAGCCTGCTCGGCATGATCGGGCCAGCCATCGTGTTCGCCGGAACCGTCTGGTTGCTTGGCAACT
GGTGGACAGCGCGCCTCGTATACACCGGCCTGGCCCTGATGATCGGCGTGTCGATCTGGGACTTGGTTTCACCGGCAAATCGCCGCTGCGGGCCGGATGG
CTGCGAACTCCCAGCAAAACACGGCTGACGGCGTGAGCCAGCGGCCAACACAGAAAAGGAACGATGAATGACCACCCTCAAAATCACCGGCATGACTTGC
GACTCGTGCGCAGTGCATGTCAAGGAAGCCCTGGAGAAAGTGCCAGGCGTGCAGTCGGCGAATGTCTCATATACCAAGGGCAGCGCCAAGCTCGCCGTCG
AGACCGGCACATCGCCGGACGCGTTGACTGCCGCCGTGGCCGGACTCGGTTATCGGGCCACGCTCGCCGACGCGCTCGTGCCTCCGGTGGGCGGCGGCTT
GCTCGTCAAGATGCGCGAATGGCTAGGTAGCGGCGACAAGGCTGGTGATGATGGTGGCGGATTGCATATTGCCGTTATCGGCAGCGGCGGCGCGGCGATG
GCGGCGGCGCTGAAGGCCGTCGAGCAAGGCGCGCACGTCACCCTGATCGAGCGCGGCACTATTGGCGGCACCTGCGTCAATATCGGCTGCGTGCCGTCCA
AGATCATGATCCGCGCTGCTCACATCGCCCACTTGCGTCGAGAAAGCCCGTTCGATGGCGGCATGCCGCCCACACCGCCGACGATCTTGCGCGAGCGGCT
GCTGGCCCAGCAGCAGGCGCGCGTCGATGAACTGCGCCACGCCAAATACGAAGGCATCCTGGATGACAATCCCGCCATCTCCGTGCTGCACGGCGAAGCC
CGTTTCAAGGACGGCCACAGCCTGACCGTGCAGCTCAATGGCGGCGGCGAGCGTGTGGTGACTTTCGACCGTTGCCTGATCGCCACCGGCGCGAGTCCGG
CCGTGCCGCCGATCCCCGGCCTGAAAGACACACCCTACTGGACTTCCACCGAAGCGCTGGTCAGCGACACCATTCCCGAGCGGTTGGCGGTGATCGGCTC
ATCGGTGGTGGCGCTGGAACTGGCGCAAGCTTTTGCCCGGCTGGGCAGCCAGGTCACGATCCTGGCGCGCAGCACCTTGTTCTTCCGAGAAGACCCGGCC
ATCGGCGAGGCAATCACGGCGGCGTTCCGCGCCGAAGGGATCGAGGTGCTGGAGCACACCCAGGCCAGCCAGGTCGCGCACGAGGGCGGCGAATTCGTGC
TCACCACGGCGCACGGCGAGCTGCGTGCCGACAAACTGCTGGTCGCCACCGGTCGCTCGCCCAACACGCGCAGCCTGGCGCTGGACGCGGCAGGCGTCGC
GCTCAACCTGCAAGGCGCTATCGTCATCGACGTCGGCATGCGGACCAGCACGCCGGACATCTACGCGGCCGGCGACTGCACCGACCAGCCTCAGTTCGTC
TATGTGGCGGCAGCGGCCGGCACCCGTGCGGCGATCAACATGACGGGCGGTGACGCGGCGCTTAACCTTGCCGCCATGCCTGCCGTGGTGTTCACCGATC
CGCAAGTCGCCACCGTGGGCTACAGCGAGGCAGAGGCCCAGCACGACGGGATCGAGACCGACAGTCGCACCTTGACCTTGGACAACGTGCCGCGTGCGCT
CGCCAACTTCGACACACGCGGCTTCATCAAGCTGGTCATCGAGGAAGGTAGTGGACGGCTCATCGGCGTACAGGCGGTCGCGCCGGAAGCCGGCGAACTG
ATCCAGACGGCGGTACTCGCCATCCGTAACCGGATGACCGTGCAGGAACTGGCCGACCAGTTGTTCCCCTATCTGACGATGGTCGAGGGACTGAAGCTCG
CGGCGCAGACCTTTAACAAGGATGTGAAGCAGCTTTCCTGCTGCGCCGGGTGAGAAAAAGGAGGTGTTCGATGAACGCCTACACGGTGTCCCGGCTGGCC
CTTAATGCCGGGGTGAGCGTGCACATCGTGCGCGACTACCTGCTGCGCGGACTGCTGCGGCCGGTGGCGTGCACCCCTGGCGGCTACGGCCTGTTCGACG
ATGCGGCCTTGCAACGGCTGTGCTTCGTGCGGGCTGCTTTCGAAGCGGGTATCGGTCTCGACGCGCTGGCGCGGCTGTGCCGGGCGTTGGATACCGCGGA
CGGCGACGAAGCGGCCGCGCAGCTTGCCGTGCTGCGCCAGTTCGTCGAACGTCGGCGCGAAGCATTGGCCGATCTGGAGGTGCAGTTGGCCACCATGCCG
ACCGAGCTGGTACAGCATGCGGAGAGTCTGCCATGAACAGCCCCGAGCGCTTGCCGACCGAGACACACAAGCCGTTCACCGGCTACCTGTGGGGCGCGTT
GGCCGTGCTCACCTGTCCCTGCCATTTGCCGATTCTCGCTGTGGTGCTCGCGGGGACGACGGCCGGCGCGTTCATCGGGGAGCATTGGGGTATTGCAGCC
ATCACGCTGACCGGCTTGTTTGTCCTGTCCGTGACGCGGCTGTTGCGGGTCTTCAAGGAAAGATCGTGAGCACATCACTGCCCGCCAGATGGACGGCGAC
CGAATTGGCGCAGGCGGTTGTGCGCGGGCAGTTTGAGCTGCACTACCAGCCGATTGTCGATTTGCGCAGTGACCAGATTGTCGGTGCGGAAGCCCTGTTG
CGCTGGCGTCATCCGCAGCTCGGACTTTTGCCGCCGGGCCAGTTCCTGCCCGTGGTCGAATCGTCCGGCTTGATGCCTGAAATCGGCGCTTGGGTGCTGG
GCACCGCCTGCCGCCAGATGCGCGAATGGCGGATGCTGGCATGGCAACCGTTCCGGCTCGCCGTCAATGTTTCGGCGAGCCAGGTAGGACCGGATTTCGA
CGGGTGGGTAAAGGGCGTGCTGGCTGACGCCGAGTTGCCTGCCGAGTATCTGGAAATTGAGCTGACCGAATCGGTCGCGTTCGGCAATCCGGCGATCTTC
CCAGCCCTGGAAGCCTTGCGACAGATCGGTGTGCGCTTCGCTGCCGATGACTTCGGGACGGGGTATTCCTGTCTGCAACACCTGAAGTGCTGCCCGATTA
CTAAGCTCAAGATCGACCAGTCCTTCGTCGCCGGACTCGCCGACGACCACCGCGACCGGACCATCGTGCACACCGTGATTCAGCTTGCGCACGGGCTGGG
AATGGACGTGGTGGCCGAGGGCGTGGAAACGCCGACCAGTCTCGCGCTGTTGCGGCAAGCGGAGTGCGATACGGGGCAAGGCTTCCTGTTCGCCAAGCCA
GTGCCGGCGGCGGCATTCGCCGCCTTTGTCAGTCAATGGAGGGGTGCCACCATGAATGCAAATGATCCGACTGCCACCAGTTGCTGCGTGTGCTGCAAGG
AAATCCCGCTCGACGCCGCCTTCACACCGGAAGGTGCGGAGTACGTCGAGCGCTTCTGCGGGCTGGAGTGTTATCAACGCTTCCAGGCGCGGGCAAGCAA
CGCGACCGAAACGAGCGCCGAACTGAACGCTTGCGGTTCGCCGCCGTCAGATTGAGGCATACCCTATCCTGATGTCAGGATAGACCGCCTCACAACGTCA
GAATAGAGTCGATTGTGTTATTTATTGACACATGCAGAAAAAGGTCATAGATTTCTTCCTGACATTTTCGCCCAGGGAGGCATCTTGCAGGGTCAACGCA
TCGGCTACGTCCGGGTCAGCAGCTTCGACCAGAACCCGGAACGGCAACTTGAACACGTCGAAGTCGGCAAGGTGTTCACCGACAAGGCGTCGGGCAAGGA
CACCCAGCGGCCCGAGCTTGATTCGCTGCTGGCCTTCGTACGCGAAGGCGACACCGTGGTGGTTCATAGCATGGATCGCCTGGCGCGCAACCTCGATGAC
TTGCGCCGCCTCGTGCAAAAGCTCACCAAGCGCGGCGTGCGTATCGAGTTCGTCAAGGAAAGCCTGACCTTCACCGGCGAGGATTCGCCGATGGCGAACC
TAATGCTGTCGGTCATGGGGGCGTTCGCCGAATTCGAGCGGGCCTTGATCCGCGAGCGGCAGAGGGAAGGCATCGCGCTCGCCAAACAGCGCGGAGCCTA
CCGGGGCCGCAAGAAAGCGCTGTCGCCCGAACAGGTAGCCGATCTGCGGCAGCGGGCCGCCGCCGGCGAACAAAAAGCGAAGCTGGCCCGCGAGTTTGGT
GTCAGCCGGGAGACCCTGTATCAATACTTGAGAACGGATCAGTAAATATGCCACGTCGTTCAATCCTGTCCGCCGCCGAGCGGGAAAGCCTGCTGGCGTT
GCCGGACTCCAAGGACGACCTGATCCGACATTACACATTCAGCGATAGCGACCTCTCGATCATCCGACAGCGGCGCGGGCCTGCAAATCGTTTGGGCTTT
GCAGTTCAGCTCTGTTACCTGCGTTTCCCCGGCATCATTCTTGGTGTCGATCAGCCGCCGTTCCTACCTTTACTGAAACTGGTCGCCGACCAACTCAAGG
TCGGCATCGAAAACTGGGACGAGTACGGGCAGCGGGAGCAGACCCGGCGCGAGCACCTGGTCGAGCTGCAAGCCTTGTTCGGCTTTCAGCCGTTCACCAT
GAGCCACTACCGGCAGGCCGTGCACACGCTGACCGAGCTGGCCATGCAGACCGACAAAGGCATCGTGCTGGCCAGCGCCTTGATCGAACATCTGCGGCGG
CAGTCGGTCATTCTGCCTGCCCTCAACGCCGTCGAGCGGGCGAGCGCCGAGGCAATCACCCGTGCCAACCGGCGCATCTACGATGCCTTGGCCGAACCGC
TGTCGGACGCGCATCGCCGCCGCCTCGACGACCTGCTCAAGCGCCGCGATAACGGCAAGACGACCTGGCTGGCTTGGCTGCGCCAGTCGCCCGTCAAGCC
AAACTCGCGGCACATGCTGGAACACATCGAACGCCTCAAAGCGTGGCAGACGCTCGACCTGCCTTCGGGCATCGAGCGTCTGGTTCACCAGAACCGGCTG
CTCAAGATCGCCCGCGAAGGCGGTCAGATGACGCCCGCCGACTTGGCCAAGTTCGAGCCACAGCGCCGCTACGCAACCCTGGTGGCGCTTGCCATTGAAG
GCATGGCTACCGTCACCGACGAAATCATCGACCTACACGACCGCATCTTGGGCAAGCTGTTCAACGCCGCCAAGAATAAGCATCAGCAGCAGTTCCAGGC
GTCCGGCAAGGCCATCAACGCCAAGGTGCGCCTGTACGGACGCATCGGCCAGGCGCTGATCGACGCCAAGCAGTCGGGACGCGACCCGTTCGCCGCCATC
GAGGCCGTCATGTCCTGGGATGCTTTCGCCGAGAGCGTCACCGAGGCGCAGAAGCTCGCGCAGCCCGATGACTTCGATTTTCTGCATCGCATCGGCGAGA
GCTACGCCACTTTGCGCCGTTACGCGCCGGAATTTCTTGCTGTGCTCAAGCTGCGGGCGGCGCCCGCTGCCAAGAACGTGCTCGATGCCATCGAGGTGCT
GCGCGGCATGAACACCGACAACGCCCGCAAGGTGCCCGCCGATGCCCCGACCGATTTCATTAAGCCGCGCTGGCAGAAGCTGGTGATGACCGACGCCGGC
ATCGACCGGCGCTACTACGAGCTGTGCGCGCTATCGGAGCTGAAGAACTCACTGCGCTCGGGCGACATCTGGGTGCAGGGTTCGCGCCAGTTCAAGGATT
TCGAGGACTATCTGGTGCCGCCTGCGAAGTTCGCCAGTCTCAAGCAGTCCAGTGAATTGCCGCTGGCCGTGGCCACCGACTGCGATCAGTACCTGCACGA
GCGGCTGACGCTGCTGGAAACCCAGCTCGCCACCGTCAACCGCATGGCGGCGGCCAACAACCTGCCGGACGCCATCATCACCGAGTCGGGCCTGAAAATC
ACGCCGTTGGATGCGGCGGTGCCGGACACCGCGCAGGCGTTGATCGACCAAACGGCCATGATCCTGCCGCACGTCAAGATCACCGAGCTGCTGCTTGAAG
TCGATGAGTGGACGGGCTTCACCCGGCACTTCACACACCTGAAATCGGGCGATCTGGCCAAGGACAAAAATTTGCTGCTGACCACCATCTTGGCCGACGC
GATCAACCTGGGCCTGACCAAGATGGCCGAGTCCTGCCCCGGCACGACCTACGCCAAGTTGGCTTGGCTGCAAGCCTGGCATACCCGCGACGAAACCTAT
TCGACGGCATTGGCCGAATTGGTCAACGCCCAATTCCAGCACCCGTTCGCCGGGCACTGGGGCGACGGCACCACGTCATCGTCGGACGGCCAGAACTTCC
GAACCGGCAGCAAGGCCGAGAGTACCGGGCACATCAACCCAAAATATGGCAGCAGCCCAGGACGGACTTTCTACACCCATATCTCCGACCAGTACGCGCC
GTTCCATACCAAGGTGGTCAATGTCGGCGTGCGCGATTCGACCTATGTGCTCGACGGCCTGCTGTACCACGAGTCCGACTTGCGCATCGAGGAACACTAC
ACCGACACGGCGGGCTTCACCGATCACGTCTTCGCCTTGATGCACCTGCTGGGCTTCCGCTTCGCGCCGCGCATCCGCGACTTGGGCGACACCAAGCTGT
TCATCCCCAAGGGCGAAACCAATTACGATGCACTCAAGCCGATGATTAGCAGTGACAAGCTGAACATCAAGGCGATTCGTGCCCATTGGGACGAAATCTT
GCGGCTGGCCACCTCGATCAAGCAGGGCACAGTGACGGCCTCGCTGATGCTGCGCAAGCTCGGCAGCTACCCGCGCCAGAACGGTCTGGCCGTGGCGTTG
CGCGAGCTGGGCCGCATCGAACGCACGTTGTTCATCCTGGATTGGCTACAAAGCGTGGAACTGCGCCGCCGCGTGCATGCCGGGTTGAACAAGGGCGAAG
CCCGCAACGCGCTGGCCCGCGCCGTGTTCTTCAACCGCCTTGGCGAAATCCGCGACCGCAGTTTCGAGCAGCAGCGCTACCGAGCCAGCGGCCTCAACCT
GGTGACGGCGGCCGTCGTGTTGTGGAACACGGTCTATCTGGAACGGGCTGCACATGCGCTGCGCGGCAACGGCCATGCCGTCGATGACGCGCTGTTGCAA
TATCTGTCGCCGCTCGGCTGGGAGCACATCAATCTGACCGGCGATTACCTGTGGCGCAGCAGCGCCAAGATCGGCGCAGGCAAGTTCAGGCCGTTACGAC
CGCTGCAACCGGCTTAGCGTGCTTTATTTTCCGTTTTCTGAGGCGACCCC
Recoding section
- Recoding by frameshift
- Frame
- Type
- Experimentally demonstrated
Stimulators :
- Shine-Dalgarno sequence :
- Secondary structure :
Recoding motif :
Protein section
ORF number : 2
ORF 1
| Length | Begin | End | Strand | Fusion ORF | |
|---|---|---|---|---|---|
| 561 bp | 186 aa | 5085 | 5645 | + | No |
AG : Tn3 resolvase
ORF sequence :
MQGQRIGYVRVSSFDQNPERQLEHVEVGKVFTDKASGKDTQRPELDSLLAFVREGDTVVVHSMDRLARNLDDLRRLVQKLTKRGVRIEFVKESLTFTGED
SPMANLMLSVMGAFAEFERALIRERQREGIALAKQRGAYRGRKKALSPEQVADLRQRAAAGEQKAKLAREFGVSRETLYQYLRTDQ
SPMANLMLSVMGAFAEFERALIRERQREGIALAKQRGAYRGRKKALSPEQVADLRQRAAAGEQKAKLAREFGVSRETLYQYLRTDQ
Blast result :ORF 2
| Length | Begin | End | Strand | Fusion ORF | |
|---|---|---|---|---|---|
| 2970 bp | 989 aa | 5648 | 8617 | + | Yes |
Chemistry : DDE
ORF sequence :
MPRRSILSAAERESLLALPDSKDDLIRHYTFSDSDLSIIRQRRGPANRLGFAVQLCYLRFPGIILGVDQPPFLPLLKLVADQLKVGIENWDEYGQREQTR
REHLVELQALFGFQPFTMSHYRQAVHTLTELAMQTDKGIVLASALIEHLRRQSVILPALNAVERASAEAITRANRRIYDALAEPLSDAHRRRLDDLLKRR
DNGKTTWLAWLRQSPVKPNSRHMLEHIERLKAWQTLDLPSGIERLVHQNRLLKIAREGGQMTPADLAKFEPQRRYATLVALAIEGMATVTDEIIDLHDRI
LGKLFNAAKNKHQQQFQASGKAINAKVRLYGRIGQALIDAKQSGRDPFAAIEAVMSWDAFAESVTEAQKLAQPDDFDFLHRIGESYATLRRYAPEFLAVL
KLRAAPAAKNVLDAIEVLRGMNTDNARKVPADAPTDFIKPRWQKLVMTDAGIDRRYYELCALSELKNSLRSGDIWVQGSRQFKDFEDYLVPPAKFASLKQ
SSELPLAVATDCDQYLHERLTLLETQLATVNRMAAANNLPDAIITESGLKITPLDAAVPDTAQALIDQTAMILPHVKITELLLEVDEWTGFTRHFTHLKS
GDLAKDKNLLLTTILADAINLGLTKMAESCPGTTYAKLAWLQAWHTRDETYSTALAELVNAQFQHPFAGHWGDGTTSSSDGQNFRTGSKAESTGHINPKY
GSSPGRTFYTHISDQYAPFHTKVVNVGVRDSTYVLDGLLYHESDLRIEEHYTDTAGFTDHVFALMHLLGFRFAPRIRDLGDTKLFIPKGETNYDALKPMI
SSDKLNIKAIRAHWDEILRLATSIKQGTVTASLMLRKLGSYPRQNGLAVALRELGRIERTLFILDWLQSVELRRRVHAGLNKGEARNALARAVFFNRLGE
IRDRSFEQQRYRASGLNLVTAAVVLWNTVYLERAAHALRGNGHAVDDALLQYLSPLGWEHINLTGDYLWRSSAKIGAGKFRPLRPLQPA
REHLVELQALFGFQPFTMSHYRQAVHTLTELAMQTDKGIVLASALIEHLRRQSVILPALNAVERASAEAITRANRRIYDALAEPLSDAHRRRLDDLLKRR
DNGKTTWLAWLRQSPVKPNSRHMLEHIERLKAWQTLDLPSGIERLVHQNRLLKIAREGGQMTPADLAKFEPQRRYATLVALAIEGMATVTDEIIDLHDRI
LGKLFNAAKNKHQQQFQASGKAINAKVRLYGRIGQALIDAKQSGRDPFAAIEAVMSWDAFAESVTEAQKLAQPDDFDFLHRIGESYATLRRYAPEFLAVL
KLRAAPAAKNVLDAIEVLRGMNTDNARKVPADAPTDFIKPRWQKLVMTDAGIDRRYYELCALSELKNSLRSGDIWVQGSRQFKDFEDYLVPPAKFASLKQ
SSELPLAVATDCDQYLHERLTLLETQLATVNRMAAANNLPDAIITESGLKITPLDAAVPDTAQALIDQTAMILPHVKITELLLEVDEWTGFTRHFTHLKS
GDLAKDKNLLLTTILADAINLGLTKMAESCPGTTYAKLAWLQAWHTRDETYSTALAELVNAQFQHPFAGHWGDGTTSSSDGQNFRTGSKAESTGHINPKY
GSSPGRTFYTHISDQYAPFHTKVVNVGVRDSTYVLDGLLYHESDLRIEEHYTDTAGFTDHVFALMHLLGFRFAPRIRDLGDTKLFIPKGETNYDALKPMI
SSDKLNIKAIRAHWDEILRLATSIKQGTVTASLMLRKLGSYPRQNGLAVALRELGRIERTLFILDWLQSVELRRRVHAGLNKGEARNALARAVFFNRLGE
IRDRSFEQQRYRASGLNLVTAAVVLWNTVYLERAAHALRGNGHAVDDALLQYLSPLGWEHINLTGDYLWRSSAKIGAGKFRPLRPLQPA
Blast result :
Comments
In the genome, this element is targetted by ISKpn10.
TnAs2 ORF9 (resolvase) is 95% aa similar to ISPa40,
and TnAs2 ORF10 (transposase) is 96% aa similar to ISPa38;
ORFs 1-8 are passenger genes:
ORF1 is distantly related to ISPpu12_aa1, a similar ORF is encoded on ISStma11 and ISThsp9,
ORF2: a similar ORF is encoded on ISStma11 and ISThsp9,
ORF3: a similar ORF is encoded on ISStma11 and ISThsp9,
ORF4: none of the ISFinder transposons codes for a similar ORF,
ORF5: a similar ORF is encoded on ISStma11; one to two similar ORFs are encoded on ISArsp6,
ORF6: tblastN matches in ISFinder may be casual,
ORF7: none of the ISFinder transposons codes for a similar ORF,
ORF8: none of the ISFinder transposons codes for a similar ORF.
TnAs2 ORF9 (resolvase) is 95% aa similar to ISPa40,
and TnAs2 ORF10 (transposase) is 96% aa similar to ISPa38;
ORFs 1-8 are passenger genes:
ORF1 is distantly related to ISPpu12_aa1, a similar ORF is encoded on ISStma11 and ISThsp9,
ORF2: a similar ORF is encoded on ISStma11 and ISThsp9,
ORF3: a similar ORF is encoded on ISStma11 and ISThsp9,
ORF4: none of the ISFinder transposons codes for a similar ORF,
ORF5: a similar ORF is encoded on ISStma11; one to two similar ORFs are encoded on ISArsp6,
ORF6: tblastN matches in ISFinder may be casual,
ORF7: none of the ISFinder transposons codes for a similar ORF,
ORF8: none of the ISFinder transposons codes for a similar ORF.
References
1] F. Pfeiffer (2015) Direct submission
2] F. Pfeiffer, M.A. Zamora-Lagos, M. Blettinger, A. Yeroslaviz, A. Dahl, S. Gruber, B.H. Habermann (2018) BMC Genomics 19 (1), 20
2] F. Pfeiffer, M.A. Zamora-Lagos, M. Blettinger, A. Yeroslaviz, A. Dahl, S. Gruber, B.H. Habermann (2018) BMC Genomics 19 (1), 20