TnEc1
- Family Tn3
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
ND | Escherichia coli | Escherichia coli FHI74 Escherichia coli O55:H7 str. RM12579 plasmid p12579_2 Escherichia coli O55:H7 str. CB9615 plasmid pO55 |
DNA section
IS Length : 3854 bp
Ends
IR Length : 44/48
IRL : GGGGTCAGTTTGGATATCAAAAATTATTGTACGTTAAGGCTACTTTTTAA
IRR : GGGGTCAGTTTGGATATCGAAAATTATTGTACGTTAAGGTTGTTTTTTGA
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
ACCGTACATA | AAATTGTTCC | 0 |
DNA sequence
GGGGTCAGTTTGGATATCAAAAATTATTGTACGTTAAGGCTACTTTTTAATCAGTCGTTGGTTCTCGATAAAGTGCCTGAATACGGCAAACCTGCGAAGT
GCTGTAGCCCGTAGCATCTGCTGTTTCTCTAATGCTGAGTTTTTTTACTTGTCTGTAGTACAACACTTTCTGATGCCGTTCCTGATCGGCTTGTTTTCCC
CGGTATTTACCCAACGTATGAGCTCGTTCAATTCCCTGTTTTTGGCGTTGGCGACGACTCAGCCAGTCCTTATGCGACATCGCGGCCATCAGGTCTATAA
GCATATTATTTATTGAAGTTATCACTGCGCGGGTAATCGGATCTGATTGTGAAGGATCTTTATCTGAAAGGGCTTGCCATGATGTTGGAACATCCAGACT
GACAATTCGCAATTCATGTTGTTCAATTTGCTTTTTCAGCGTTATCCAGTCGCTGTTGCTAAGACGGGTCAGGCGGTCTATCTGCTCAACCAGTAAAATA
TCATTACGGTGACTGTCCATCAGTAATCGCCCCAGTTCCGGACGGTCAAGTTTTGTACCGCTTATGTTCTCCCGATAATAACTGGCAATTTTATGCCCCC
GCTCCTGGACGAACTGTTCCAGCATCTCTTTTGCCCGATCTGCAAACTGATCTTCTGTTGACGCCCTTAAATAAGCTCTGATGAACATTTTTTCACCGCA
TTATCGCATTTAGGTTGTTGCATATATTCTATCGCATATAGGTTATGTCATTAATTGTATGAGGTCACATTTTATATCTCGCATCAGGGTGTACCCTTAT
GCGATAACCTGTTTCGTTAAAAGTACTATGTGAGGTATGAATATGGCACGGAGGCAGATTCTTTCGCAGTCGGAAAGAGAATCTCTACTGGCATTGCCGG
ATGATGAATTGACCCTGACCCGAATGGCATATTTCAGCGAACATGACCTGGCTCTTATTAATGCTCATCGCAAACCAGCCAGTCGTTTTGGATTTGCAGT
TCTTCTTTGCTATCTGAAAAATGTCGGTTTTGCTCCTGATAAGAAAACGCCCCCCTCTGATGCATTGTTAAAACCCATAGCCAACAGGTTAAAACTTGCC
GATGGGCTATGGTCCTCTTATATCAACGGCAGGGAGACTACTCGACGCGAGCATTTAACCGAGTTGTACCGTTATCTTGGTGTAAAAGCATTCACCAACA
AAATACAGCAGAGTTGTATTACACATCTGTTGCCAATGGCGACTCGTACTGACAAAGGCATTCTCCTGGCGGAAGAAATGCTGGCCTACCTTCGGCAAAA
CAAGGTTATGTTTCCTGCGATTGATGTTGTGGAACGTACCTGTGCGGAAGCTATGGCTGGCGGCGATAAAATAGTCTTTCAGACGCTAAATGCGCCCTTA
ACCTCTGCTCACAGGGAAGCTTTGGATCGTTTGCTTGAATCATCAGACAATCAACCTTCCCGGCTGACCTGGCTTCTGCAACCGCCAGGTAAAATCAACG
GTAAGAATGTACTGCAACACATTGATCGGCTGAACAGTATTGAATCACTGGCATTGCCGGAAGGTATTGATCGTACCATTCATCAAAACAGGTTACTGAA
ACTTGCGCGAGAAGGGCGAAAGATGAGCAGTAGGGACCTGACTCGATTTTCAGCAGCCCGACGTCATGCAATTCTGGTGTGTGTCCTGGAAGATGCCAGA
GCTACGCTGACAGATGAAATTATTGAGTTGCATGAACGAATATTGAACAGTCTGTTCAACAAGGCCAAAAAAACACAGGCTGAACGTCTTCAACAAACAG
GAAGGTTAATCCAGTTAAAATTAAAGCAGTATATTGATATCGGACAGGCTTTATCTGAGGCCCATGATTCCGGTGAAGATCCATGGCTTGCTATAGAGAA
AATATTGCCATGGCCTGAATTTATTGCCAGCCTGGAAGAAACTCGTCATCTTGCCAGAAAGAATAATTTTGACCCGCTACATATTATTACCGAAAAATAC
AGCACATTACGGAAATATGCTCCGCGTATGTTATCTACCTTGCAATTAGTTGCCACACCGGCAGCACAGGCGCTGGCTGATGCGTTGCTTGTAATCAAAG
ATATGTACAAGAAACAGTTACGAAAAGTCCCGGCGACAGCTCCGCTTGAGTTTGTTCCTGAAAGCTGGCGAAAAGTGGTGATAACTCCCACTGGTATTGA
CCGACAATACTATGAATTTTGTGCACTTAGTGAGCTGAAAGGGGCGTTACGTTCCGGGGATATCTGGGTTAAAGGCTCACGACGTTACAAAAATTTCGAC
GATTACCTTATTCCAGAGAAAGACTTTGATAAGCTCTCACCTGCATTACCACTACCTGTTTCTGCTGATTATCATGAATATATTACAAATCGAATGATAC
TGCTTCAGTCAAAACTAGAAGAGGTCAACAAAATGGCCACACACGGTGAATTGCCGGATGTGGAAATATCTGACAAAGGAGTAAAAATCTCCCCTCTGGA
TAATTGTGTTCCTTTGCAGGTCTCACCGCTTTCAGAGTTAATTTACAGTATGTTACCGCGTCCTAAAATCACAGAAATTCTCGACGAGGTAAACAGCTGG
ACAGCGTTTACCCGACATTTTTCACATATAAAAAATGATATAACTCGTCCCGATACACGCCTGCTTCTTACCACAATTCTTGCTGATGGCATCAATCTTG
GCCTGACGAAAATGGCAGAGGCCTGTCCCGGATGCACTAAATCATCACTCGAAGATATTCAGGCCTGGTATATCCGTGATGAAACTTATTCCGCAGCCCT
TGCAGAGCTGGTGAATGCTCAGGGAAAAAGACCTCTGGCAGCATTCTGGGGAGACGGAACAACTTCATCATCAGATGGGCAGAACTTCAGAACTGGTAAT
TCTGGTCGTTATGCTGGGCAGATTAACCCGAAATATGGGCAAGAGCCTGGATGCCAGTTTTATACACATATATCAGATCAATACAGTCCGTTTTACACCT
GCATAATCAGTCGGGTCAGAGATTCAACACATGTGCTTGATGGATTATTGTACCACGAAAGCGACCTGGATATCAGGGAACATTACACAGATACAGCGGG
TTTCACCGATCATGTTTTTGCTCTGATGCATCTGTTGGGTTTTGCATTTTGTCCCCGGATTCGGGACCTTCACGATAAAAAACTTTTCATTAAAGGTAAA
GCGGATCAATATCCGGCACTTCATTCTCTGATATCTCCGACCCGCATTAATCTGAAAGAAATAGAAATTCACTGGCGTGAAGTGCTACGTCTGGCGACCT
CAATAAAACAGGGAACAGTGACAGCATCCCTGATGCTGAGAAAACTTGCCAGTTACCCCAAACAAAATGGGTTGGCTAAAGCTCTGAGAGAGATTGGCCG
TATAGAACGAACACTGTTTATGCTGGACTGGTTTCGGGATCCGGCATTGCGGCGACGTGTCCAGGCCGGGCTGAACAAAGGAGAAGCCCGTAATGCTCTG
GCCCGTGCTGTATTCATGCATCGATTGGGGGAGATTAGAGATCGGAAACCGGAAAATCAAAGTTATCGCGCCAGTGGATTGACTTTATTGACGGCGGCTA
TTTCCTTATGGAACACAGTTTACATGGAAAGAGCGGTTGATGCTCTGAAGCGTAAGGGCATGAAAATAAATGCTCAACTATTATCGCATTTATCACCATT
AGGTTGGGAACATATCAATCTGACAGGCGATTATATCTGGAAAAACAACCGGATACCGACTTCAGGTAAGTTTCGTCGTTTGAGATCAGTTAAGATCGAC
AAGGTCAAAAAACAACCTTAACGTACAATAATTTTCGATATCCAAACTGACCCC
GCTGTAGCCCGTAGCATCTGCTGTTTCTCTAATGCTGAGTTTTTTTACTTGTCTGTAGTACAACACTTTCTGATGCCGTTCCTGATCGGCTTGTTTTCCC
CGGTATTTACCCAACGTATGAGCTCGTTCAATTCCCTGTTTTTGGCGTTGGCGACGACTCAGCCAGTCCTTATGCGACATCGCGGCCATCAGGTCTATAA
GCATATTATTTATTGAAGTTATCACTGCGCGGGTAATCGGATCTGATTGTGAAGGATCTTTATCTGAAAGGGCTTGCCATGATGTTGGAACATCCAGACT
GACAATTCGCAATTCATGTTGTTCAATTTGCTTTTTCAGCGTTATCCAGTCGCTGTTGCTAAGACGGGTCAGGCGGTCTATCTGCTCAACCAGTAAAATA
TCATTACGGTGACTGTCCATCAGTAATCGCCCCAGTTCCGGACGGTCAAGTTTTGTACCGCTTATGTTCTCCCGATAATAACTGGCAATTTTATGCCCCC
GCTCCTGGACGAACTGTTCCAGCATCTCTTTTGCCCGATCTGCAAACTGATCTTCTGTTGACGCCCTTAAATAAGCTCTGATGAACATTTTTTCACCGCA
TTATCGCATTTAGGTTGTTGCATATATTCTATCGCATATAGGTTATGTCATTAATTGTATGAGGTCACATTTTATATCTCGCATCAGGGTGTACCCTTAT
GCGATAACCTGTTTCGTTAAAAGTACTATGTGAGGTATGAATATGGCACGGAGGCAGATTCTTTCGCAGTCGGAAAGAGAATCTCTACTGGCATTGCCGG
ATGATGAATTGACCCTGACCCGAATGGCATATTTCAGCGAACATGACCTGGCTCTTATTAATGCTCATCGCAAACCAGCCAGTCGTTTTGGATTTGCAGT
TCTTCTTTGCTATCTGAAAAATGTCGGTTTTGCTCCTGATAAGAAAACGCCCCCCTCTGATGCATTGTTAAAACCCATAGCCAACAGGTTAAAACTTGCC
GATGGGCTATGGTCCTCTTATATCAACGGCAGGGAGACTACTCGACGCGAGCATTTAACCGAGTTGTACCGTTATCTTGGTGTAAAAGCATTCACCAACA
AAATACAGCAGAGTTGTATTACACATCTGTTGCCAATGGCGACTCGTACTGACAAAGGCATTCTCCTGGCGGAAGAAATGCTGGCCTACCTTCGGCAAAA
CAAGGTTATGTTTCCTGCGATTGATGTTGTGGAACGTACCTGTGCGGAAGCTATGGCTGGCGGCGATAAAATAGTCTTTCAGACGCTAAATGCGCCCTTA
ACCTCTGCTCACAGGGAAGCTTTGGATCGTTTGCTTGAATCATCAGACAATCAACCTTCCCGGCTGACCTGGCTTCTGCAACCGCCAGGTAAAATCAACG
GTAAGAATGTACTGCAACACATTGATCGGCTGAACAGTATTGAATCACTGGCATTGCCGGAAGGTATTGATCGTACCATTCATCAAAACAGGTTACTGAA
ACTTGCGCGAGAAGGGCGAAAGATGAGCAGTAGGGACCTGACTCGATTTTCAGCAGCCCGACGTCATGCAATTCTGGTGTGTGTCCTGGAAGATGCCAGA
GCTACGCTGACAGATGAAATTATTGAGTTGCATGAACGAATATTGAACAGTCTGTTCAACAAGGCCAAAAAAACACAGGCTGAACGTCTTCAACAAACAG
GAAGGTTAATCCAGTTAAAATTAAAGCAGTATATTGATATCGGACAGGCTTTATCTGAGGCCCATGATTCCGGTGAAGATCCATGGCTTGCTATAGAGAA
AATATTGCCATGGCCTGAATTTATTGCCAGCCTGGAAGAAACTCGTCATCTTGCCAGAAAGAATAATTTTGACCCGCTACATATTATTACCGAAAAATAC
AGCACATTACGGAAATATGCTCCGCGTATGTTATCTACCTTGCAATTAGTTGCCACACCGGCAGCACAGGCGCTGGCTGATGCGTTGCTTGTAATCAAAG
ATATGTACAAGAAACAGTTACGAAAAGTCCCGGCGACAGCTCCGCTTGAGTTTGTTCCTGAAAGCTGGCGAAAAGTGGTGATAACTCCCACTGGTATTGA
CCGACAATACTATGAATTTTGTGCACTTAGTGAGCTGAAAGGGGCGTTACGTTCCGGGGATATCTGGGTTAAAGGCTCACGACGTTACAAAAATTTCGAC
GATTACCTTATTCCAGAGAAAGACTTTGATAAGCTCTCACCTGCATTACCACTACCTGTTTCTGCTGATTATCATGAATATATTACAAATCGAATGATAC
TGCTTCAGTCAAAACTAGAAGAGGTCAACAAAATGGCCACACACGGTGAATTGCCGGATGTGGAAATATCTGACAAAGGAGTAAAAATCTCCCCTCTGGA
TAATTGTGTTCCTTTGCAGGTCTCACCGCTTTCAGAGTTAATTTACAGTATGTTACCGCGTCCTAAAATCACAGAAATTCTCGACGAGGTAAACAGCTGG
ACAGCGTTTACCCGACATTTTTCACATATAAAAAATGATATAACTCGTCCCGATACACGCCTGCTTCTTACCACAATTCTTGCTGATGGCATCAATCTTG
GCCTGACGAAAATGGCAGAGGCCTGTCCCGGATGCACTAAATCATCACTCGAAGATATTCAGGCCTGGTATATCCGTGATGAAACTTATTCCGCAGCCCT
TGCAGAGCTGGTGAATGCTCAGGGAAAAAGACCTCTGGCAGCATTCTGGGGAGACGGAACAACTTCATCATCAGATGGGCAGAACTTCAGAACTGGTAAT
TCTGGTCGTTATGCTGGGCAGATTAACCCGAAATATGGGCAAGAGCCTGGATGCCAGTTTTATACACATATATCAGATCAATACAGTCCGTTTTACACCT
GCATAATCAGTCGGGTCAGAGATTCAACACATGTGCTTGATGGATTATTGTACCACGAAAGCGACCTGGATATCAGGGAACATTACACAGATACAGCGGG
TTTCACCGATCATGTTTTTGCTCTGATGCATCTGTTGGGTTTTGCATTTTGTCCCCGGATTCGGGACCTTCACGATAAAAAACTTTTCATTAAAGGTAAA
GCGGATCAATATCCGGCACTTCATTCTCTGATATCTCCGACCCGCATTAATCTGAAAGAAATAGAAATTCACTGGCGTGAAGTGCTACGTCTGGCGACCT
CAATAAAACAGGGAACAGTGACAGCATCCCTGATGCTGAGAAAACTTGCCAGTTACCCCAAACAAAATGGGTTGGCTAAAGCTCTGAGAGAGATTGGCCG
TATAGAACGAACACTGTTTATGCTGGACTGGTTTCGGGATCCGGCATTGCGGCGACGTGTCCAGGCCGGGCTGAACAAAGGAGAAGCCCGTAATGCTCTG
GCCCGTGCTGTATTCATGCATCGATTGGGGGAGATTAGAGATCGGAAACCGGAAAATCAAAGTTATCGCGCCAGTGGATTGACTTTATTGACGGCGGCTA
TTTCCTTATGGAACACAGTTTACATGGAAAGAGCGGTTGATGCTCTGAAGCGTAAGGGCATGAAAATAAATGCTCAACTATTATCGCATTTATCACCATT
AGGTTGGGAACATATCAATCTGACAGGCGATTATATCTGGAAAAACAACCGGATACCGACTTCAGGTAAGTTTCGTCGTTTGAGATCAGTTAAGATCGAC
AAGGTCAAAAAACAACCTTAACGTACAATAATTTTCGATATCCAAACTGACCCC
Protein section
ORF number : 2
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
642 bp | 213 aa | 688 | 47 | - | No |
AG : Tn3 resolvase
ORF sequence :
MFIRAYLRASTEDQFADRAKEMLEQFVQERGHKIASYYRENISGTKLDRPELGRLLMDSHRNDILLVEQIDRLTRLSNSDWITLKKQIEQHELRIVSLDV
PTSWQALSDKDPSQSDPITRAVITSINNMLIDLMAAMSHKDWLSRRQRQKQGIERAHTLGKYRGKQADQERHQKVLYYRQVKKLSIRETADATGYSTSQV
CRIQALYREPTTD
PTSWQALSDKDPSQSDPITRAVITSINNMLIDLMAAMSHKDWLSRRQRQKQGIERAHTLGKYRGKQADQERHQKVLYYRQVKKLSIRETADATGYSTSQV
CRIQALYREPTTD
Blast result :ORF 2
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
2985 bp | 994 aa | 837 | 3821 | + | No |
Chemistry : DDE
ORF sequence :
MNMARRQILSQSERESLLALPDDELTLTRMAYFSEHDLALINAHRKPASRFGFAVLLCYLKNVGFAPDKKTPPSDALLKPIANRLKLADGLWSSYINGRE
TTRREHLTELYRYLGVKAFTNKIQQSCITHLLPMATRTDKGILLAEEMLAYLRQNKVMFPAIDVVERTCAEAMAGGDKIVFQTLNAPLTSAHREALDRLL
ESSDNQPSRLTWLLQPPGKINGKNVLQHIDRLNSIESLALPEGIDRTIHQNRLLKLAREGRKMSSRDLTRFSAARRHAILVCVLEDARATLTDEIIELHE
RILNSLFNKAKKTQAERLQQTGRLIQLKLKQYIDIGQALSEAHDSGEDPWLAIEKILPWPEFIASLEETRHLARKNNFDPLHIITEKYSTLRKYAPRMLS
TLQLVATPAAQALADALLVIKDMYKKQLRKVPATAPLEFVPESWRKVVITPTGIDRQYYEFCALSELKGALRSGDIWVKGSRRYKNFDDYLIPEKDFDKL
SPALPLPVSADYHEYITNRMILLQSKLEEVNKMATHGELPDVEISDKGVKISPLDNCVPLQVSPLSELIYSMLPRPKITEILDEVNSWTAFTRHFSHIKN
DITRPDTRLLLTTILADGINLGLTKMAEACPGCTKSSLEDIQAWYIRDETYSAALAELVNAQGKRPLAAFWGDGTTSSSDGQNFRTGNSGRYAGQINPKY
GQEPGCQFYTHISDQYSPFYTCIISRVRDSTHVLDGLLYHESDLDIREHYTDTAGFTDHVFALMHLLGFAFCPRIRDLHDKKLFIKGKADQYPALHSLIS
PTRINLKEIEIHWREVLRLATSIKQGTVTASLMLRKLASYPKQNGLAKALREIGRIERTLFMLDWFRDPALRRRVQAGLNKGEARNALARAVFMHRLGEI
RDRKPENQSYRASGLTLLTAAISLWNTVYMERAVDALKRKGMKINAQLLSHLSPLGWEHINLTGDYIWKNNRIPTSGKFRRLRSVKIDKVKKQP
TTRREHLTELYRYLGVKAFTNKIQQSCITHLLPMATRTDKGILLAEEMLAYLRQNKVMFPAIDVVERTCAEAMAGGDKIVFQTLNAPLTSAHREALDRLL
ESSDNQPSRLTWLLQPPGKINGKNVLQHIDRLNSIESLALPEGIDRTIHQNRLLKLAREGRKMSSRDLTRFSAARRHAILVCVLEDARATLTDEIIELHE
RILNSLFNKAKKTQAERLQQTGRLIQLKLKQYIDIGQALSEAHDSGEDPWLAIEKILPWPEFIASLEETRHLARKNNFDPLHIITEKYSTLRKYAPRMLS
TLQLVATPAAQALADALLVIKDMYKKQLRKVPATAPLEFVPESWRKVVITPTGIDRQYYEFCALSELKGALRSGDIWVKGSRRYKNFDDYLIPEKDFDKL
SPALPLPVSADYHEYITNRMILLQSKLEEVNKMATHGELPDVEISDKGVKISPLDNCVPLQVSPLSELIYSMLPRPKITEILDEVNSWTAFTRHFSHIKN
DITRPDTRLLLTTILADGINLGLTKMAEACPGCTKSSLEDIQAWYIRDETYSAALAELVNAQGKRPLAAFWGDGTTSSSDGQNFRTGNSGRYAGQINPKY
GQEPGCQFYTHISDQYSPFYTCIISRVRDSTHVLDGLLYHESDLDIREHYTDTAGFTDHVFALMHLLGFAFCPRIRDLHDKKLFIKGKADQYPALHSLIS
PTRINLKEIEIHWREVLRLATSIKQGTVTASLMLRKLASYPKQNGLAKALREIGRIERTLFMLDWFRDPALRRRVQAGLNKGEARNALARAVFMHRLGEI
RDRKPENQSYRASGLTLLTAAISLWNTVYMERAVDALKRKGMKINAQLLSHLSPLGWEHINLTGDYIWKNNRIPTSGKFRRLRSVKIDKVKKQP
Blast result :
Comments
TnEc1 was found on a B/O plasmid from an Australian human commensal Escherichia coli isolate.
TnEc1 is 50% aa (ORFA : TnpR, the resolvase) similar to TnAzs17 and 82% aa (ORFB : the transposase) similar to TnSba14.
TnEc1 is 50% aa (ORFA : TnpR, the resolvase) similar to TnAzs17 and 82% aa (ORFB : the transposase) similar to TnSba14.
References
1] Moran, R.A. and Hall, R.M. (2015) Direct submission