ISHvo20
- Family ISH3
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
CP001955 | ND | Haloferax volcanii | Haloferax volcanii DS2 plasmid pHV4 Haloferax volcanii DS2 |
DNA section
IS Length : 1399 bp
Ends
IR Length : 15/16
IRL : CAGTACATCACAAAGCTGGTTAGTTGAGACGTCCGCTTGCTGAAGGTGTG
IRR : CAGTACCTCACAAAGCATCCTCGGCTAGCTGTTTCTGAAGCCTGAGTTCT
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
CATTGAGGCA | AAAAT | CGATACTACG | 5 |
CGAATTGCGC | AGACT | AGTATAGAAA | 5 |
GTATCTAGCC | AGTCT/ATTCT | CGATTCGATG | 11 |
DNA sequence
CAGTACATCACAAAGCTGGTTAGTTGAGACGTCCGCTTGCTGAAGGTGTGTCTAATACCAAGCAAGCAGACGGTTCAATCCACGAGGACCAGCTCCTTAA
CTTCCTCGTCAACTCCCTTGACGAGGAAGTTGCACTCACTCTCGGTGAAAACGCTGAAATCGGTGCTGAAGACATCTACGAGGTCCTCGTCGGCGCCTGC
GCCGACGGGACCTCGGTCTCTACACTCTGCAAGAGAAGCGAAGATGCACCTCACGAAAACTCGGTTCTCTACCATCTCCGCACCAAGTTCGACCTCGAGA
CGCTCGAACAAATCGGGAACACGCTCCTCCAGAAGGACGTTCTCGACGTCCTGCCTGAGCAGGTGGAGGTCTGCGCAGACCTCCACCTGCGGCCCTACTA
TGGTGACGAAGACGACACGGACGGTCTCTATCACTCCCAAGCAAAGCGTGGAACCACCGCGTTCCACGCGTACGCGACACTGTACGCACGCGTGAAGAAC
AAACGCTACACGCTGGCGGTGCGCCGTCTCGAAGACGGCGACACCGCCAGCAGTGTCCTCGCAGAGTTCCTCGGTATTCTCGACGGCCTTGACCTCGGTG
TCAAGGCCGTCTATCTTGACCGCGAATTCTACGACAGCAAGTGTTTGACGCTGCTTCAGGCGCACAACCACGCGTACGTCATGCCGATCGTCCGCTGGGG
ACGAACGATCAAGCGAGAACTCTCAGAAGGGTGGAGTCGCGTGATTCAGCACAGTCTGACAGCGAAACTCGACGGTCACAGCTGGACCGTCGAGTTTCCC
GTCTACATCGACTGTACCTACCAGAACGGACGGTACGACGAACATGGCGTGGCGCGTCACGGCTACGCCGCTGACGCGCCGTTCATCAACTCACCACGAG
ACGCTCGATACCACTACGCGAAACGCTTCGGTATCGAGGCGAGCTACCGACTCTCCGAGCAAACGATTGCGACGACTACGACACAGAATCCGGTCGTACG
GCTGTTGTACGTCGTGGTGAGTTTGCTGTTACAGAACGTGTGGCGGTATCTGCACTGGGAGTACGTGGCGACGCCCCGCCGAGGCGGGCGTCGCCTCTGG
GAGTGGTCGTACAAGGAATTCACCAACTTGATTCGACGGGCAGCGTGGACGGCCCTCGCGGTGCGTCGGGCCGTCCCCGCGAACCGGCCACCAGACGACC
GGTTTAGCCGGTAACTCTTGACCGGGCTAGCCAGCGGTGTGAGTGGCGACGCTGTCGCGTCAGCGGCTGACCGCCGCCGACAGCGACAGCTCTCCACCGA
TTCGTCCATGATTCTCCCGTCGAGACCGTCAATGCAACCGCTCCGACACAGAACTCAGGCTTCAGAAACAGCTAGCCGAGGATGCTTTGTGAGGTACTG
CTTCCTCGTCAACTCCCTTGACGAGGAAGTTGCACTCACTCTCGGTGAAAACGCTGAAATCGGTGCTGAAGACATCTACGAGGTCCTCGTCGGCGCCTGC
GCCGACGGGACCTCGGTCTCTACACTCTGCAAGAGAAGCGAAGATGCACCTCACGAAAACTCGGTTCTCTACCATCTCCGCACCAAGTTCGACCTCGAGA
CGCTCGAACAAATCGGGAACACGCTCCTCCAGAAGGACGTTCTCGACGTCCTGCCTGAGCAGGTGGAGGTCTGCGCAGACCTCCACCTGCGGCCCTACTA
TGGTGACGAAGACGACACGGACGGTCTCTATCACTCCCAAGCAAAGCGTGGAACCACCGCGTTCCACGCGTACGCGACACTGTACGCACGCGTGAAGAAC
AAACGCTACACGCTGGCGGTGCGCCGTCTCGAAGACGGCGACACCGCCAGCAGTGTCCTCGCAGAGTTCCTCGGTATTCTCGACGGCCTTGACCTCGGTG
TCAAGGCCGTCTATCTTGACCGCGAATTCTACGACAGCAAGTGTTTGACGCTGCTTCAGGCGCACAACCACGCGTACGTCATGCCGATCGTCCGCTGGGG
ACGAACGATCAAGCGAGAACTCTCAGAAGGGTGGAGTCGCGTGATTCAGCACAGTCTGACAGCGAAACTCGACGGTCACAGCTGGACCGTCGAGTTTCCC
GTCTACATCGACTGTACCTACCAGAACGGACGGTACGACGAACATGGCGTGGCGCGTCACGGCTACGCCGCTGACGCGCCGTTCATCAACTCACCACGAG
ACGCTCGATACCACTACGCGAAACGCTTCGGTATCGAGGCGAGCTACCGACTCTCCGAGCAAACGATTGCGACGACTACGACACAGAATCCGGTCGTACG
GCTGTTGTACGTCGTGGTGAGTTTGCTGTTACAGAACGTGTGGCGGTATCTGCACTGGGAGTACGTGGCGACGCCCCGCCGAGGCGGGCGTCGCCTCTGG
GAGTGGTCGTACAAGGAATTCACCAACTTGATTCGACGGGCAGCGTGGACGGCCCTCGCGGTGCGTCGGGCCGTCCCCGCGAACCGGCCACCAGACGACC
GGTTTAGCCGGTAACTCTTGACCGGGCTAGCCAGCGGTGTGAGTGGCGACGCTGTCGCGTCAGCGGCTGACCGCCGCCGACAGCGACAGCTCTCCACCGA
TTCGTCCATGATTCTCCCGTCGAGACCGTCAATGCAACCGCTCCGACACAGAACTCAGGCTTCAGAAACAGCTAGCCGAGGATGCTTTGTGAGGTACTG
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1167 bp | 388 aa | 48 | 1214 | + | No |
Chemistry : DDE
ORF sequence :
MSNTKQADGSIHEDQLLNFLVNSLDEEVALTLGENAEIGAEDIYEVLVGACADGTSVSTLCKRSEDAPHENSVLYHLRTKFDLETLEQIGNTLLQKDVLD
VLPEQVEVCADLHLRPYYGDEDDTDGLYHSQAKRGTTAFHAYATLYARVKNKRYTLAVRRLEDGDTASSVLAEFLGILDGLDLGVKAVYLDREFYDSKCL
TLLQAHNHAYVMPIVRWGRTIKRELSEGWSRVIQHSLTAKLDGHSWTVEFPVYIDCTYQNGRYDEHGVARHGYAADAPFINSPRDARYHYAKRFGIEASY
RLSEQTIATTTTQNPVVRLLYVVVSLLLQNVWRYLHWEYVATPRRGGRRLWEWSYKEFTNLIRRAAWTALAVRRAVPANRPPDDRFSR
VLPEQVEVCADLHLRPYYGDEDDTDGLYHSQAKRGTTAFHAYATLYARVKNKRYTLAVRRLEDGDTASSVLAEFLGILDGLDLGVKAVYLDREFYDSKCL
TLLQAHNHAYVMPIVRWGRTIKRELSEGWSRVIQHSLTAKLDGHSWTVEFPVYIDCTYQNGRYDEHGVARHGYAADAPFINSPRDARYHYAKRFGIEASY
RLSEQTIATTTTQNPVVRLLYVVVSLLLQNVWRYLHWEYVATPRRGGRRLWEWSYKEFTNLIRRAAWTALAVRRAVPANRPPDDRFSR
Blast result :
Comments
ISHvo20 is 97% aa similar to ISH51.
IS_pep_1 is HVO_A0364 and HVO_A0445.
IS_pep_1 is HVO_A0364 and HVO_A0445.
References
1] Hartman, A.L., Norais, C., Badger, J.H., Delmas, S., Haldenby, S., Madupu, R., Robinson, J., Khouri, H., Ren, Q., Lowe, T.M., Maupin-Furlow, J., Pohlschroder, M., Daniels, C., Pfeiffer, F., Allers, T., Eisen, J.A. (2010) PLoS ONE 5, E9605-E9605