ISHvo20

  • Family ISH3
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
CP001955 ND Haloferax volcanii
Haloferax volcanii DS2 plasmid pHV4
Haloferax volcanii DS2
DNA section
IS Length : 1399 bp

Ends


IR Length : 15/16

IRL : CAGTACATCACAAAGCTGGTTAGTTGAGACGTCCGCTTGCTGAAGGTGTG
IRR : CAGTACCTCACAAAGCATCCTCGGCTAGCTGTTTCTGAAGCCTGAGTTCT

Insertion site


Left flankDirect repeatRight flankDR Length
CATTGAGGCAAAAATCGATACTACG5
CGAATTGCGCAGACTAGTATAGAAA5
GTATCTAGCCAGTCT/ATTCTCGATTCGATG11

DNA sequence

CAGTACATCACAAAGCTGGTTAGTTGAGACGTCCGCTTGCTGAAGGTGTGTCTAATACCAAGCAAGCAGACGGTTCAATCCACGAGGACCAGCTCCTTAA
CTTCCTCGTCAACTCCCTTGACGAGGAAGTTGCACTCACTCTCGGTGAAAACGCTGAAATCGGTGCTGAAGACATCTACGAGGTCCTCGTCGGCGCCTGC
GCCGACGGGACCTCGGTCTCTACACTCTGCAAGAGAAGCGAAGATGCACCTCACGAAAACTCGGTTCTCTACCATCTCCGCACCAAGTTCGACCTCGAGA
CGCTCGAACAAATCGGGAACACGCTCCTCCAGAAGGACGTTCTCGACGTCCTGCCTGAGCAGGTGGAGGTCTGCGCAGACCTCCACCTGCGGCCCTACTA
TGGTGACGAAGACGACACGGACGGTCTCTATCACTCCCAAGCAAAGCGTGGAACCACCGCGTTCCACGCGTACGCGACACTGTACGCACGCGTGAAGAAC
AAACGCTACACGCTGGCGGTGCGCCGTCTCGAAGACGGCGACACCGCCAGCAGTGTCCTCGCAGAGTTCCTCGGTATTCTCGACGGCCTTGACCTCGGTG
TCAAGGCCGTCTATCTTGACCGCGAATTCTACGACAGCAAGTGTTTGACGCTGCTTCAGGCGCACAACCACGCGTACGTCATGCCGATCGTCCGCTGGGG
ACGAACGATCAAGCGAGAACTCTCAGAAGGGTGGAGTCGCGTGATTCAGCACAGTCTGACAGCGAAACTCGACGGTCACAGCTGGACCGTCGAGTTTCCC
GTCTACATCGACTGTACCTACCAGAACGGACGGTACGACGAACATGGCGTGGCGCGTCACGGCTACGCCGCTGACGCGCCGTTCATCAACTCACCACGAG
ACGCTCGATACCACTACGCGAAACGCTTCGGTATCGAGGCGAGCTACCGACTCTCCGAGCAAACGATTGCGACGACTACGACACAGAATCCGGTCGTACG
GCTGTTGTACGTCGTGGTGAGTTTGCTGTTACAGAACGTGTGGCGGTATCTGCACTGGGAGTACGTGGCGACGCCCCGCCGAGGCGGGCGTCGCCTCTGG
GAGTGGTCGTACAAGGAATTCACCAACTTGATTCGACGGGCAGCGTGGACGGCCCTCGCGGTGCGTCGGGCCGTCCCCGCGAACCGGCCACCAGACGACC
GGTTTAGCCGGTAACTCTTGACCGGGCTAGCCAGCGGTGTGAGTGGCGACGCTGTCGCGTCAGCGGCTGACCGCCGCCGACAGCGACAGCTCTCCACCGA
TTCGTCCATGATTCTCCCGTCGAGACCGTCAATGCAACCGCTCCGACACAGAACTCAGGCTTCAGAAACAGCTAGCCGAGGATGCTTTGTGAGGTACTG
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1167 bp388 aa481214+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MSNTKQADGSIHEDQLLNFLVNSLDEEVALTLGENAEIGAEDIYEVLVGACADGTSVSTLCKRSEDAPHENSVLYHLRTKFDLETLEQIGNTLLQKDVLD
VLPEQVEVCADLHLRPYYGDEDDTDGLYHSQAKRGTTAFHAYATLYARVKNKRYTLAVRRLEDGDTASSVLAEFLGILDGLDLGVKAVYLDREFYDSKCL
TLLQAHNHAYVMPIVRWGRTIKRELSEGWSRVIQHSLTAKLDGHSWTVEFPVYIDCTYQNGRYDEHGVARHGYAADAPFINSPRDARYHYAKRFGIEASY
RLSEQTIATTTTQNPVVRLLYVVVSLLLQNVWRYLHWEYVATPRRGGRRLWEWSYKEFTNLIRRAAWTALAVRRAVPANRPPDDRFSR

 

Blast result :
Comments
ISHvo20 is 97% aa similar to ISH51.
IS_pep_1 is HVO_A0364 and HVO_A0445.
References
1] Hartman, A.L., Norais, C., Badger, J.H., Delmas, S., Haldenby, S., Madupu, R., Robinson, J., Khouri, H., Ren, Q., Lowe, T.M., Maupin-Furlow, J., Pohlschroder, M., Daniels, C., Pfeiffer, F., Allers, T., Eisen, J.A. (2010) PLoS ONE 5, E9605-E9605