ISHtu4
- Family IS200/IS605
- Group IS1341
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
CP001862 | ND | Haloterrigena turkmenica | Haloterrigena turkmenica plasmid pHTUR02 |
DNA section
IS Length : 1479 bp
Ends
Left end : GAGATAAACAGGCGCAAAACCTCGCCGTTTACGGCGGAGATACGCGCTGACACTGGATGACATAAACTGCCAACAGTAGCATTGATGGATATTCTATGTC II struct. : No
Right end : GGAGGACGTTTCGCCCCACGAGAACAGGCCGTGAACCGCGAACCGTAATATCCCAACGGCGGTCGGGAATCCTCGCCCTTTAGGGCGGGGAGGATGTCAA II struct. : No
Insertion site
Left flank | LE cleavage site | Right flank | RE cleavage site |
---|---|---|---|
GTCGGTAGTATG | TTAT | CAAAGCGTCCAT | tcaa |
DNA sequence
GAGATAAACAGGCGCAAAACCTCGCCGTTTACGGCGGAGATACGCGCTGACACTGGATGACATAAACTGCCAACAGTAGCATTGATGGATATTCTATGTC
GGTCGGAACTATTAAAATACCAACTTTCGTAATCAGTTATAAAGATAGAAAAATGAGCCGAACTGTCCGAACATTCGAGGCCACTATCACGAACCAGCGA
CAGGTTCGTGACGACCTCGACCAACTCGGATGGGCCGCCTCAAAACTCTGGAATGTCGGTCGCTACTACACACAAGAACAGTGGGACGAAACAGGCGAGA
TTCCCGATGACGGGGAACTCAAATCCGAACTCAAAAGCCACGAACGCTACACGGACTTACATTCTCAATCCAGTCAGCGCGTTCTCGAAGAACTCGCTGA
AGCGTTCAACGGCTGGTTCGGTAAGCGTCGGAACGGCGACGAGCGTGCCCGACCGCCCGGCTACCGCAAAAACGGAAACTCCCACCCACGTTCGACCGTG
ACGTTCAAAACGGCTGGTTTCAAGCACGACGCACAGTTTACCCGTATCCGTCTCTCGAAAGGTCGCAATCTCAAAGAACACCGTTCGGACTTCATCCTAT
GCGAGTACCAGACTCGCCCCGATATTGACCTGACCGAGTGGGACATTCAACAAGTTCGCGCCGTCTATAAACGCGACGAGTGGCGACTTCAATTCGTCTG
TCGCACTACCATCGACCCGGACCCACCGGGCGACAAGGTAGCTGGTGTTGACCTCGGGATTTGCAACTTCGCCGCCGTCTCGTTCGGCGGTGAATCCCTG
TTGTACCCCGGTGGAGCACTCAAAGAGGACGAATACTACTTTGCGAAGAAGAAAGCCAAGTGCGACGATTCCTCGTCCCGAGAGGCAACTCGTCTCGACC
GGAAGCGAACGGGTCGTCGAGCACACTTCTTGCACGCCCTTTCGAAATCAATCGTGGAGGAGTGTGTCGAACGTGGTGTCGGGACGCTTGTCGTTGGAGA
CCTTAGTGGCATCCGAGAAGATGACGAGAACGGCGAATCTCGGAATTGGGGCGACCACGGTAACTTGGATTTGCATGGGTGGGCGTTCGACCGTTTCACG
ACGCTTCTCGACTACAAGGCGGAATCCGAAGGTATCGACGTGGTGTTGGTGTCGGAACGCGATACGTCCAAGTCGTGTTCGTCGTGCGGTCACACAGACG
ACAATCAGCGCGTGGAACGTGGACTATATGTCTGCGAGGAATGTGACACGGTTTCAAACGCGGACGTGAATGGCGCTGAAAACATTCGACAAAAGGTACT
CCCGAATCTCGCCACGGATGGCGGCGATAGGGATAACGGCTGGTTGGCACAGCCAACGGTTCACCTGTTCGACCGTAGTGGAGGACGTTTCGCCCCACGA
GAACAGGCCGTGAACCGCGAACCGTAATATCCCAACGGCGGTCGGGAATCCTCGCCCTTTAGGGCGGGGAGGATGTCAA
GGTCGGAACTATTAAAATACCAACTTTCGTAATCAGTTATAAAGATAGAAAAATGAGCCGAACTGTCCGAACATTCGAGGCCACTATCACGAACCAGCGA
CAGGTTCGTGACGACCTCGACCAACTCGGATGGGCCGCCTCAAAACTCTGGAATGTCGGTCGCTACTACACACAAGAACAGTGGGACGAAACAGGCGAGA
TTCCCGATGACGGGGAACTCAAATCCGAACTCAAAAGCCACGAACGCTACACGGACTTACATTCTCAATCCAGTCAGCGCGTTCTCGAAGAACTCGCTGA
AGCGTTCAACGGCTGGTTCGGTAAGCGTCGGAACGGCGACGAGCGTGCCCGACCGCCCGGCTACCGCAAAAACGGAAACTCCCACCCACGTTCGACCGTG
ACGTTCAAAACGGCTGGTTTCAAGCACGACGCACAGTTTACCCGTATCCGTCTCTCGAAAGGTCGCAATCTCAAAGAACACCGTTCGGACTTCATCCTAT
GCGAGTACCAGACTCGCCCCGATATTGACCTGACCGAGTGGGACATTCAACAAGTTCGCGCCGTCTATAAACGCGACGAGTGGCGACTTCAATTCGTCTG
TCGCACTACCATCGACCCGGACCCACCGGGCGACAAGGTAGCTGGTGTTGACCTCGGGATTTGCAACTTCGCCGCCGTCTCGTTCGGCGGTGAATCCCTG
TTGTACCCCGGTGGAGCACTCAAAGAGGACGAATACTACTTTGCGAAGAAGAAAGCCAAGTGCGACGATTCCTCGTCCCGAGAGGCAACTCGTCTCGACC
GGAAGCGAACGGGTCGTCGAGCACACTTCTTGCACGCCCTTTCGAAATCAATCGTGGAGGAGTGTGTCGAACGTGGTGTCGGGACGCTTGTCGTTGGAGA
CCTTAGTGGCATCCGAGAAGATGACGAGAACGGCGAATCTCGGAATTGGGGCGACCACGGTAACTTGGATTTGCATGGGTGGGCGTTCGACCGTTTCACG
ACGCTTCTCGACTACAAGGCGGAATCCGAAGGTATCGACGTGGTGTTGGTGTCGGAACGCGATACGTCCAAGTCGTGTTCGTCGTGCGGTCACACAGACG
ACAATCAGCGCGTGGAACGTGGACTATATGTCTGCGAGGAATGTGACACGGTTTCAAACGCGGACGTGAATGGCGCTGAAAACATTCGACAAAAGGTACT
CCCGAATCTCGCCACGGATGGCGGCGATAGGGATAACGGCTGGTTGGCACAGCCAACGGTTCACCTGTTCGACCGTAGTGGAGGACGTTTCGCCCCACGA
GAACAGGCCGTGAACCGCGAACCGTAATATCCCAACGGCGGTCGGGAATCCTCGCCCTTTAGGGCGGGGAGGATGTCAA
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1275 bp | 424 aa | 153 | 1427 | + | No |
AG : TnpB
ORF sequence :
MSRTVRTFEATITNQRQVRDDLDQLGWAASKLWNVGRYYTQEQWDETGEIPDDGELKSELKSHERYTDLHSQSSQRVLEELAEAFNGWFGKRRNGDERAR
PPGYRKNGNSHPRSTVTFKTAGFKHDAQFTRIRLSKGRNLKEHRSDFILCEYQTRPDIDLTEWDIQQVRAVYKRDEWRLQFVCRTTIDPDPPGDKVAGVD
LGICNFAAVSFGGESLLYPGGALKEDEYYFAKKKAKCDDSSSREATRLDRKRTGRRAHFLHALSKSIVEECVERGVGTLVVGDLSGIREDDENGESRNWG
DHGNLDLHGWAFDRFTTLLDYKAESEGIDVVLVSERDTSKSCSSCGHTDDNQRVERGLYVCEECDTVSNADVNGAENIRQKVLPNLATDGGDRDNGWLAQ
PTVHLFDRSGGRFAPREQAVNREP
PPGYRKNGNSHPRSTVTFKTAGFKHDAQFTRIRLSKGRNLKEHRSDFILCEYQTRPDIDLTEWDIQQVRAVYKRDEWRLQFVCRTTIDPDPPGDKVAGVD
LGICNFAAVSFGGESLLYPGGALKEDEYYFAKKKAKCDDSSSREATRLDRKRTGRRAHFLHALSKSIVEECVERGVGTLVVGDLSGIREDDENGESRNWG
DHGNLDLHGWAFDRFTTLLDYKAESEGIDVVLVSERDTSKSCSSCGHTDDNQRVERGLYVCEECDTVSNADVNGAENIRQKVLPNLATDGGDRDNGWLAQ
PTVHLFDRSGGRFAPREQAVNREP
Blast result :
Comments
ISHtu4 is 78% aa (ORFB) similar to ISHhu7.
References
1] Pfeiffer, F. (2013) Direct submission
2] Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E., Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Kyrpides,N., Mavromatis,K., Ivanova,N., Mikhailova,N., Saunders,E., Brettin,T., Detter,J.C., Han,C., Larimer,F., Land,M., Hauser,L., Markowitz,V., Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D., Tindal,B., Fahnrich,R., Schneider,S., Klenk,H.-P. and Eisen,J.A. (2010) Direct submission GenBank
2] Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E., Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Kyrpides,N., Mavromatis,K., Ivanova,N., Mikhailova,N., Saunders,E., Brettin,T., Detter,J.C., Han,C., Larimer,F., Land,M., Hauser,L., Markowitz,V., Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D., Tindal,B., Fahnrich,R., Schneider,S., Klenk,H.-P. and Eisen,J.A. (2010) Direct submission GenBank