ISHtu4

  • Family IS200/IS605
  • Group IS1341
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
CP001862 ND Haloterrigena turkmenica
Haloterrigena turkmenica plasmid pHTUR02
DNA section
IS Length : 1479 bp

Ends


Left end : GAGATAAACAGGCGCAAAACCTCGCCGTTTACGGCGGAGATACGCGCTGACACTGGATGACATAAACTGCCAACAGTAGCATTGATGGATATTCTATGTC II struct. : No
Right end : GGAGGACGTTTCGCCCCACGAGAACAGGCCGTGAACCGCGAACCGTAATATCCCAACGGCGGTCGGGAATCCTCGCCCTTTAGGGCGGGGAGGATGTCAA II struct. : No

Insertion site


Left flankLE cleavage siteRight flankRE cleavage site
GTCGGTAGTATGTTATCAAAGCGTCCATtcaa

DNA sequence

GAGATAAACAGGCGCAAAACCTCGCCGTTTACGGCGGAGATACGCGCTGACACTGGATGACATAAACTGCCAACAGTAGCATTGATGGATATTCTATGTC
GGTCGGAACTATTAAAATACCAACTTTCGTAATCAGTTATAAAGATAGAAAAATGAGCCGAACTGTCCGAACATTCGAGGCCACTATCACGAACCAGCGA
CAGGTTCGTGACGACCTCGACCAACTCGGATGGGCCGCCTCAAAACTCTGGAATGTCGGTCGCTACTACACACAAGAACAGTGGGACGAAACAGGCGAGA
TTCCCGATGACGGGGAACTCAAATCCGAACTCAAAAGCCACGAACGCTACACGGACTTACATTCTCAATCCAGTCAGCGCGTTCTCGAAGAACTCGCTGA
AGCGTTCAACGGCTGGTTCGGTAAGCGTCGGAACGGCGACGAGCGTGCCCGACCGCCCGGCTACCGCAAAAACGGAAACTCCCACCCACGTTCGACCGTG
ACGTTCAAAACGGCTGGTTTCAAGCACGACGCACAGTTTACCCGTATCCGTCTCTCGAAAGGTCGCAATCTCAAAGAACACCGTTCGGACTTCATCCTAT
GCGAGTACCAGACTCGCCCCGATATTGACCTGACCGAGTGGGACATTCAACAAGTTCGCGCCGTCTATAAACGCGACGAGTGGCGACTTCAATTCGTCTG
TCGCACTACCATCGACCCGGACCCACCGGGCGACAAGGTAGCTGGTGTTGACCTCGGGATTTGCAACTTCGCCGCCGTCTCGTTCGGCGGTGAATCCCTG
TTGTACCCCGGTGGAGCACTCAAAGAGGACGAATACTACTTTGCGAAGAAGAAAGCCAAGTGCGACGATTCCTCGTCCCGAGAGGCAACTCGTCTCGACC
GGAAGCGAACGGGTCGTCGAGCACACTTCTTGCACGCCCTTTCGAAATCAATCGTGGAGGAGTGTGTCGAACGTGGTGTCGGGACGCTTGTCGTTGGAGA
CCTTAGTGGCATCCGAGAAGATGACGAGAACGGCGAATCTCGGAATTGGGGCGACCACGGTAACTTGGATTTGCATGGGTGGGCGTTCGACCGTTTCACG
ACGCTTCTCGACTACAAGGCGGAATCCGAAGGTATCGACGTGGTGTTGGTGTCGGAACGCGATACGTCCAAGTCGTGTTCGTCGTGCGGTCACACAGACG
ACAATCAGCGCGTGGAACGTGGACTATATGTCTGCGAGGAATGTGACACGGTTTCAAACGCGGACGTGAATGGCGCTGAAAACATTCGACAAAAGGTACT
CCCGAATCTCGCCACGGATGGCGGCGATAGGGATAACGGCTGGTTGGCACAGCCAACGGTTCACCTGTTCGACCGTAGTGGAGGACGTTTCGCCCCACGA
GAACAGGCCGTGAACCGCGAACCGTAATATCCCAACGGCGGTCGGGAATCCTCGCCCTTTAGGGCGGGGAGGATGTCAA
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1275 bp424 aa1531427+No
ORF function : Accessory Gene
AG : TnpB

ORF sequence :

MSRTVRTFEATITNQRQVRDDLDQLGWAASKLWNVGRYYTQEQWDETGEIPDDGELKSELKSHERYTDLHSQSSQRVLEELAEAFNGWFGKRRNGDERAR
PPGYRKNGNSHPRSTVTFKTAGFKHDAQFTRIRLSKGRNLKEHRSDFILCEYQTRPDIDLTEWDIQQVRAVYKRDEWRLQFVCRTTIDPDPPGDKVAGVD
LGICNFAAVSFGGESLLYPGGALKEDEYYFAKKKAKCDDSSSREATRLDRKRTGRRAHFLHALSKSIVEECVERGVGTLVVGDLSGIREDDENGESRNWG
DHGNLDLHGWAFDRFTTLLDYKAESEGIDVVLVSERDTSKSCSSCGHTDDNQRVERGLYVCEECDTVSNADVNGAENIRQKVLPNLATDGGDRDNGWLAQ
PTVHLFDRSGGRFAPREQAVNREP

 

Blast result :
Comments
ISHtu4 is 78% aa (ORFB) similar to ISHhu7.
References
1] Pfeiffer, F. (2013) Direct submission
2] Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E., Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Kyrpides,N., Mavromatis,K., Ivanova,N., Mikhailova,N., Saunders,E., Brettin,T., Detter,J.C., Han,C., Larimer,F., Land,M., Hauser,L., Markowitz,V., Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D., Tindal,B., Fahnrich,R., Schneider,S., Klenk,H.-P. and Eisen,J.A. (2010) Direct submission GenBank