ISHhu13

  • Family IS200/IS605
  • Group IS1341
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
LN831304 ND Halobacterium hubeiense
Halobacterium hubeiense
DNA section
IS Length : 1374 bp

Ends


Left end : TAGGAGTACCCGAGACTACGGGTGCGGGATAAAACCGACACTCGTGAGCCGTCTCACAGTCCATAGCAGGGTTGACTCGCTACGATTCCTTATTAATACT II struct. : Yes
Right end : ACCGGGATGGTGAACGCGAACGGGGTCAAACCCCTGCCGAATTCGGCCAGAGCGGGAGTCCACGGTGAACACCACGGTCCCTAGACCGTAGTGAGCTTAC II struct. : Yes

Insertion site


Left flankLE cleavage siteRight flankRE cleavage site
CATAGTAGATCAATGTGGTAGTGGCttac

DNA sequence

TAGGAGTACCCGAGACTACGGGTGCGGGATAAAACCGACACTCGTGAGCCGTCTCACAGTCCATAGCAGGGTTGACTCGCTACGATTCCTTATTAATACT
TTTAATCACAGGTTGTGTTGTGATGTATATGGAGGCCCACCGCACTGTTCCGGTCAAACTCGATGTGACCAAAGAGCAGGCGGACCTGCTTCACGAGACC
ATCGACGAGTTTCGGTGGGCCGCCAACTATGTCGTAGATGCTGCGTGGGACGGCGAATGGGCCGAGACCCGCAAGTCAGTCCTGCACGACCTGACTTACG
ACGAACTACGCGAGCAGACACGGCTTCACAGCAATCACGTTCAGTCGGCTCGCGACCGTGCCGTTGACGCACTCGAAAGTGTGGTCGCGAAGTGGTCGAA
GGGTGAGTACGCTTCGTTGCCCACGTTCACCTCGCCGTTCGTGGAATATAACCAGCGAAACGCCACATTCCACGACGACCACGCCTCGTTATCTACCGTC
GAGGGACGCGTCACTGTCAAGTACGTCATTCCCGAGCTAAACCGTGAAACGCCCTTCTCCGAATATCTGCAGAGCAACAAGTGGGAGACTACTGGTGCGA
CACTCCATTATCGCCGTGGCGATTTCTACCTCCACGTCCGAACAAAGGCGGATGTGGACGACCCCGTTCCAGCCGAGAACGGAACGGTTCTTGGTGTGGA
CCTCGGGGTCGAGAACATCGCCGTTACTTCGACTGGCGTGTTCTGGTCTGCCGACGAACTCAACCACTGGCGACAGGAGTACGTTCAGCGCCGCAAATCG
CTCCAAGAGTGTGGCTCGCGGTGGGCCCACGAGAACGTCCAAGCGGTCGGCCGCAAGGAGACGGGGCGCTTTGAGCAGTATCTTCACCGTGTCGCGAACG
AACTCGTAGACGAGGCAGCTGAAAATGGCTGCACAGTGATCGCCTTCGAGAACTTGACGGATATCCGCCATCGGATGCCCGATGCCCGTAGGTTCCACGA
GTGGGCGTTCCGCCGTCTGTACGACTACGTCTCGTACAAGACCGAGGTACGCGGAATCCAGGTTGAGCAAGTGAACCCGAAGAACACGTCGAGACGGTGT
TCATCTTGTGGGTTCACACACGGGGACAACCGCCCGGCACAGGACACATTCTGCTGTCAGTCCTGTGGATACGAGAACCACGCGGACTACAACGCAGCGA
AGAACATTGGCTATCGACTCCTTCGCAACCAAACTGGCGGCGAAGGAGGCGCACCCGTAGGCGTGCGCCTGAACACCGGGATGGTGAACGCGAACGGGGT
CAAACCCCTGCCGAATTCGGCCAGAGCGGGAGTCCACGGTGAACACCACGGTCCCTAGACCGTAGTGAGCTTAC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1229 bp409 aa1301358+No
ORF function : Accessory Gene
AG : TnpB

ORF sequence :

MEAHRTVPVKLDVTKEQADLLHETIDEFRWAANYVVDAAWDGEWAETRKSVLHDLTYDELREQTRLHSNHVQSARDRAVDALESVVAKWSKGEYASLPTF
TSPFVEYNQRNATFHDDHASLSTVEGRVTVKYVIPELNRETPFSEYLQSNKWETTGATLHYRRGDFYLHVRTKADVDDPVPAENGTVLGVDLGVENIAVT
STGVFWSADELNHWRQEYVQRRKSLQECGSRWAHENVQAVGRKETGRFEQYLHRVANELVDEAAENGCTVIAFENLTDIRHRMPDARRFHEWAFRRLYDY
VSYKTEVRGIQVEQVNPKNTSRRCSSCGFTHGDNRPAQDTFCCQSCGYENHADYNAAKNIGYRLLRNQTGGEGGAPVGVRLNTGMVNANGVKPLPNSARA
GVHGEHHGP

 

Blast result :
Comments
ISHhu13 is 74% aa (ORFB) similar to ISNph16.
References
1] F. Pfeiffer (2013) Direct submission
2] Jaakkola S.T., Pfeiffer F., Ravantti J.J., Guo Q., Liu Y., Chen X., Ma H., Yang C., Oksanen H.M., Bamford D.H. (2015) Environ Microbiol. doi: 10.1111/1462-2920.13130