ISHhu13
- Family IS200/IS605
- Group IS1341
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
LN831304 | ND | Halobacterium hubeiense | Halobacterium hubeiense |
DNA section
IS Length : 1374 bp
Ends
Left end : TAGGAGTACCCGAGACTACGGGTGCGGGATAAAACCGACACTCGTGAGCCGTCTCACAGTCCATAGCAGGGTTGACTCGCTACGATTCCTTATTAATACT II struct. : Yes
Right end : ACCGGGATGGTGAACGCGAACGGGGTCAAACCCCTGCCGAATTCGGCCAGAGCGGGAGTCCACGGTGAACACCACGGTCCCTAGACCGTAGTGAGCTTAC II struct. : Yes
Insertion site
Left flank | LE cleavage site | Right flank | RE cleavage site |
---|---|---|---|
CATAGTAGA | TCAA | TGTGGTAGTGGC | ttac |
DNA sequence
TAGGAGTACCCGAGACTACGGGTGCGGGATAAAACCGACACTCGTGAGCCGTCTCACAGTCCATAGCAGGGTTGACTCGCTACGATTCCTTATTAATACT
TTTAATCACAGGTTGTGTTGTGATGTATATGGAGGCCCACCGCACTGTTCCGGTCAAACTCGATGTGACCAAAGAGCAGGCGGACCTGCTTCACGAGACC
ATCGACGAGTTTCGGTGGGCCGCCAACTATGTCGTAGATGCTGCGTGGGACGGCGAATGGGCCGAGACCCGCAAGTCAGTCCTGCACGACCTGACTTACG
ACGAACTACGCGAGCAGACACGGCTTCACAGCAATCACGTTCAGTCGGCTCGCGACCGTGCCGTTGACGCACTCGAAAGTGTGGTCGCGAAGTGGTCGAA
GGGTGAGTACGCTTCGTTGCCCACGTTCACCTCGCCGTTCGTGGAATATAACCAGCGAAACGCCACATTCCACGACGACCACGCCTCGTTATCTACCGTC
GAGGGACGCGTCACTGTCAAGTACGTCATTCCCGAGCTAAACCGTGAAACGCCCTTCTCCGAATATCTGCAGAGCAACAAGTGGGAGACTACTGGTGCGA
CACTCCATTATCGCCGTGGCGATTTCTACCTCCACGTCCGAACAAAGGCGGATGTGGACGACCCCGTTCCAGCCGAGAACGGAACGGTTCTTGGTGTGGA
CCTCGGGGTCGAGAACATCGCCGTTACTTCGACTGGCGTGTTCTGGTCTGCCGACGAACTCAACCACTGGCGACAGGAGTACGTTCAGCGCCGCAAATCG
CTCCAAGAGTGTGGCTCGCGGTGGGCCCACGAGAACGTCCAAGCGGTCGGCCGCAAGGAGACGGGGCGCTTTGAGCAGTATCTTCACCGTGTCGCGAACG
AACTCGTAGACGAGGCAGCTGAAAATGGCTGCACAGTGATCGCCTTCGAGAACTTGACGGATATCCGCCATCGGATGCCCGATGCCCGTAGGTTCCACGA
GTGGGCGTTCCGCCGTCTGTACGACTACGTCTCGTACAAGACCGAGGTACGCGGAATCCAGGTTGAGCAAGTGAACCCGAAGAACACGTCGAGACGGTGT
TCATCTTGTGGGTTCACACACGGGGACAACCGCCCGGCACAGGACACATTCTGCTGTCAGTCCTGTGGATACGAGAACCACGCGGACTACAACGCAGCGA
AGAACATTGGCTATCGACTCCTTCGCAACCAAACTGGCGGCGAAGGAGGCGCACCCGTAGGCGTGCGCCTGAACACCGGGATGGTGAACGCGAACGGGGT
CAAACCCCTGCCGAATTCGGCCAGAGCGGGAGTCCACGGTGAACACCACGGTCCCTAGACCGTAGTGAGCTTAC
TTTAATCACAGGTTGTGTTGTGATGTATATGGAGGCCCACCGCACTGTTCCGGTCAAACTCGATGTGACCAAAGAGCAGGCGGACCTGCTTCACGAGACC
ATCGACGAGTTTCGGTGGGCCGCCAACTATGTCGTAGATGCTGCGTGGGACGGCGAATGGGCCGAGACCCGCAAGTCAGTCCTGCACGACCTGACTTACG
ACGAACTACGCGAGCAGACACGGCTTCACAGCAATCACGTTCAGTCGGCTCGCGACCGTGCCGTTGACGCACTCGAAAGTGTGGTCGCGAAGTGGTCGAA
GGGTGAGTACGCTTCGTTGCCCACGTTCACCTCGCCGTTCGTGGAATATAACCAGCGAAACGCCACATTCCACGACGACCACGCCTCGTTATCTACCGTC
GAGGGACGCGTCACTGTCAAGTACGTCATTCCCGAGCTAAACCGTGAAACGCCCTTCTCCGAATATCTGCAGAGCAACAAGTGGGAGACTACTGGTGCGA
CACTCCATTATCGCCGTGGCGATTTCTACCTCCACGTCCGAACAAAGGCGGATGTGGACGACCCCGTTCCAGCCGAGAACGGAACGGTTCTTGGTGTGGA
CCTCGGGGTCGAGAACATCGCCGTTACTTCGACTGGCGTGTTCTGGTCTGCCGACGAACTCAACCACTGGCGACAGGAGTACGTTCAGCGCCGCAAATCG
CTCCAAGAGTGTGGCTCGCGGTGGGCCCACGAGAACGTCCAAGCGGTCGGCCGCAAGGAGACGGGGCGCTTTGAGCAGTATCTTCACCGTGTCGCGAACG
AACTCGTAGACGAGGCAGCTGAAAATGGCTGCACAGTGATCGCCTTCGAGAACTTGACGGATATCCGCCATCGGATGCCCGATGCCCGTAGGTTCCACGA
GTGGGCGTTCCGCCGTCTGTACGACTACGTCTCGTACAAGACCGAGGTACGCGGAATCCAGGTTGAGCAAGTGAACCCGAAGAACACGTCGAGACGGTGT
TCATCTTGTGGGTTCACACACGGGGACAACCGCCCGGCACAGGACACATTCTGCTGTCAGTCCTGTGGATACGAGAACCACGCGGACTACAACGCAGCGA
AGAACATTGGCTATCGACTCCTTCGCAACCAAACTGGCGGCGAAGGAGGCGCACCCGTAGGCGTGCGCCTGAACACCGGGATGGTGAACGCGAACGGGGT
CAAACCCCTGCCGAATTCGGCCAGAGCGGGAGTCCACGGTGAACACCACGGTCCCTAGACCGTAGTGAGCTTAC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1229 bp | 409 aa | 130 | 1358 | + | No |
AG : TnpB
ORF sequence :
MEAHRTVPVKLDVTKEQADLLHETIDEFRWAANYVVDAAWDGEWAETRKSVLHDLTYDELREQTRLHSNHVQSARDRAVDALESVVAKWSKGEYASLPTF
TSPFVEYNQRNATFHDDHASLSTVEGRVTVKYVIPELNRETPFSEYLQSNKWETTGATLHYRRGDFYLHVRTKADVDDPVPAENGTVLGVDLGVENIAVT
STGVFWSADELNHWRQEYVQRRKSLQECGSRWAHENVQAVGRKETGRFEQYLHRVANELVDEAAENGCTVIAFENLTDIRHRMPDARRFHEWAFRRLYDY
VSYKTEVRGIQVEQVNPKNTSRRCSSCGFTHGDNRPAQDTFCCQSCGYENHADYNAAKNIGYRLLRNQTGGEGGAPVGVRLNTGMVNANGVKPLPNSARA
GVHGEHHGP
TSPFVEYNQRNATFHDDHASLSTVEGRVTVKYVIPELNRETPFSEYLQSNKWETTGATLHYRRGDFYLHVRTKADVDDPVPAENGTVLGVDLGVENIAVT
STGVFWSADELNHWRQEYVQRRKSLQECGSRWAHENVQAVGRKETGRFEQYLHRVANELVDEAAENGCTVIAFENLTDIRHRMPDARRFHEWAFRRLYDY
VSYKTEVRGIQVEQVNPKNTSRRCSSCGFTHGDNRPAQDTFCCQSCGYENHADYNAAKNIGYRLLRNQTGGEGGAPVGVRLNTGMVNANGVKPLPNSARA
GVHGEHHGP
Blast result :
Comments
ISHhu13 is 74% aa (ORFB) similar to ISNph16.
References
1] F. Pfeiffer (2013) Direct submission
2] Jaakkola S.T., Pfeiffer F., Ravantti J.J., Guo Q., Liu Y., Chen X., Ma H., Yang C., Oksanen H.M., Bamford D.H. (2015) Environ Microbiol. doi: 10.1111/1462-2920.13130
2] Jaakkola S.T., Pfeiffer F., Ravantti J.J., Guo Q., Liu Y., Chen X., Ma H., Yang C., Oksanen H.M., Bamford D.H. (2015) Environ Microbiol. doi: 10.1111/1462-2920.13130