ISHhu12
- Family IS200/IS605
- Group IS1341
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
LN831304 | ND | Halobacterium hubeiense | Halobacterium hubeiense |
DNA section
IS Length : 1364 bp
Ends
Left end : CAAGTGGTACAAGGCGACTGCCTCGGGGCTTGACCCCGAGGGTGAAGCCGATGACTTTCCAGTATTTTAACATCCTCCAACTCCCAACCGAATATGAAGG II struct. : Yes
Right end : AGACTGCGCTCCCTACGTTCACACCTCAACGCGAGGCAGTGGATGCAAAGCGCGTCGTTGAAGCAGGAAGCCCCGAGGCTTGACCTCGGGGCCAGTTCAC II struct. : Yes
Insertion site
Left flank | LE cleavage site | Right flank | RE cleavage site |
---|---|---|---|
CAGGCTGACGGT | TGTA | CGGATTGCTTG | tcac |
DNA sequence
CAAGTGGTACAAGGCGACTGCCTCGGGGCTTGACCCCGAGGGTGAAGCCGATGACTTTCCAGTATTTTAACATCCTCCAACTCCCAACCGAATATGAAGG
AACCGATGACCCTCACGCTCCGCTTCCGCGCCTATCTTTCCGATGCTGTGGCGAGCGAAGCGTGGCGACACATTGACATCCTCAGACAAATCCGCAACCA
CGCAGTCAGAGACTACTACACGGCAGACTACACCGATAAACCGTCAGAATACGACCAGCACAAGAAATTCACCGACTGGAAACAACACTGGTCAGTGTTC
AGTGACCCGTCCGCTCACGCTGCTCAACAGGCAATCAGTCAAATCCACGACGATCTCGATGGCCTCGAAGAAAAACAAAATAACGGGTATGATGTTGGTC
GGTTGCGGTGGCAAGGAAGCGGTGAGTTTCGGTCGATATCGTACAATCAGTCCAGTCGCTTCAACGTAGATCACAACACGGGCGACGACCAATTCGTACG
ACTCCGACTCGAAAAACTCGGCTGGTTCAAAATCCGAGCGAACCGCCGCGTTCCACCGGCAGACGACATCAACGAAGCCATCCTGAAAAAACAACCCACC
GGCGAATGGTACGTCTCACTCGTCGTTGATGACGCAACCCAACCCAGTGAGAAACCAGCACTCACCGAGATTGACCCGGACGACTGCATCGGCGTTGACG
TTGGCATCACAAGTTACATCCATACGTCCGAGAATCTCACCGTAGATACGCTGGATCTCTCCGACGAGTACGACCGGTACGCCCGTAAGCAACGGGGTCT
TGCCCGGAAAGAACATGGGTCCAGTAATTGGGAGGCGCAGCGACAGAAGGTAGCGAAAGCGAAGCGGAAGATCAAACGGAAGGTTCTGGATTTCCAGCAT
AAGTTGACGACGTGGCTCGTCAAGGCGTATGATGTGGTCGCGGTGGAAGACCTGGATGTGAAGCCGATGCTGGAAGGCAGTCACAGTGCGAAGAACAAGC
AGGATGCGGCGTGGGCACGCTTCCGAGAGTTACTGGAGTACAAGGCGGAGGTTCACGGAACACACGTTATATCGGTGGAACCTGCTGGTACGACGAAAGA
GTGCGCGTCGTGCGGTGTTTCAACGGATAAGCCGTTGTGGGTGCGTGAGCATTCGTGTCCGGCGTGCGGGCACACCGACGACCGCGATTTGAACGCAGCA
AAGAATATTTTGAATCGTGGGTTACGGCAGTTAGGGGCGGGACGCTCCGAATCAACGCCTGTGCAGACTGCGCTCCCTACGTTCACACCTCAACGCGAGG
CAGTGGATGCAAAGCGCGTCGTTGAAGCAGGAAGCCCCGAGGCTTGACCTCGGGGCCAGTTCAC
AACCGATGACCCTCACGCTCCGCTTCCGCGCCTATCTTTCCGATGCTGTGGCGAGCGAAGCGTGGCGACACATTGACATCCTCAGACAAATCCGCAACCA
CGCAGTCAGAGACTACTACACGGCAGACTACACCGATAAACCGTCAGAATACGACCAGCACAAGAAATTCACCGACTGGAAACAACACTGGTCAGTGTTC
AGTGACCCGTCCGCTCACGCTGCTCAACAGGCAATCAGTCAAATCCACGACGATCTCGATGGCCTCGAAGAAAAACAAAATAACGGGTATGATGTTGGTC
GGTTGCGGTGGCAAGGAAGCGGTGAGTTTCGGTCGATATCGTACAATCAGTCCAGTCGCTTCAACGTAGATCACAACACGGGCGACGACCAATTCGTACG
ACTCCGACTCGAAAAACTCGGCTGGTTCAAAATCCGAGCGAACCGCCGCGTTCCACCGGCAGACGACATCAACGAAGCCATCCTGAAAAAACAACCCACC
GGCGAATGGTACGTCTCACTCGTCGTTGATGACGCAACCCAACCCAGTGAGAAACCAGCACTCACCGAGATTGACCCGGACGACTGCATCGGCGTTGACG
TTGGCATCACAAGTTACATCCATACGTCCGAGAATCTCACCGTAGATACGCTGGATCTCTCCGACGAGTACGACCGGTACGCCCGTAAGCAACGGGGTCT
TGCCCGGAAAGAACATGGGTCCAGTAATTGGGAGGCGCAGCGACAGAAGGTAGCGAAAGCGAAGCGGAAGATCAAACGGAAGGTTCTGGATTTCCAGCAT
AAGTTGACGACGTGGCTCGTCAAGGCGTATGATGTGGTCGCGGTGGAAGACCTGGATGTGAAGCCGATGCTGGAAGGCAGTCACAGTGCGAAGAACAAGC
AGGATGCGGCGTGGGCACGCTTCCGAGAGTTACTGGAGTACAAGGCGGAGGTTCACGGAACACACGTTATATCGGTGGAACCTGCTGGTACGACGAAAGA
GTGCGCGTCGTGCGGTGTTTCAACGGATAAGCCGTTGTGGGTGCGTGAGCATTCGTGTCCGGCGTGCGGGCACACCGACGACCGCGATTTGAACGCAGCA
AAGAATATTTTGAATCGTGGGTTACGGCAGTTAGGGGCGGGACGCTCCGAATCAACGCCTGTGCAGACTGCGCTCCCTACGTTCACACCTCAACGCGAGG
CAGTGGATGCAAAGCGCGTCGTTGAAGCAGGAAGCCCCGAGGCTTGACCTCGGGGCCAGTTCAC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1242 bp | 413 aa | 106 | 1347 | + | No |
AG : TnpB
ORF sequence :
MTLTLRFRAYLSDAVASEAWRHIDILRQIRNHAVRDYYTADYTDKPSEYDQHKKFTDWKQHWSVFSDPSAHAAQQAISQIHDDLDGLEEKQNNGYDVGRL
RWQGSGEFRSISYNQSSRFNVDHNTGDDQFVRLRLEKLGWFKIRANRRVPPADDINEAILKKQPTGEWYVSLVVDDATQPSEKPALTEIDPDDCIGVDVG
ITSYIHTSENLTVDTLDLSDEYDRYARKQRGLARKEHGSSNWEAQRQKVAKAKRKIKRKVLDFQHKLTTWLVKAYDVVAVEDLDVKPMLEGSHSAKNKQD
AAWARFRELLEYKAEVHGTHVISVEPAGTTKECASCGVSTDKPLWVREHSCPACGHTDDRDLNAAKNILNRGLRQLGAGRSESTPVQTALPTFTPQREAV
DAKRVVEAGSPEA
RWQGSGEFRSISYNQSSRFNVDHNTGDDQFVRLRLEKLGWFKIRANRRVPPADDINEAILKKQPTGEWYVSLVVDDATQPSEKPALTEIDPDDCIGVDVG
ITSYIHTSENLTVDTLDLSDEYDRYARKQRGLARKEHGSSNWEAQRQKVAKAKRKIKRKVLDFQHKLTTWLVKAYDVVAVEDLDVKPMLEGSHSAKNKQD
AAWARFRELLEYKAEVHGTHVISVEPAGTTKECASCGVSTDKPLWVREHSCPACGHTDDRDLNAAKNILNRGLRQLGAGRSESTPVQTALPTFTPQREAV
DAKRVVEAGSPEA
Blast result :
Comments
ISHhu12 is 87% aa (ORFB) similar to ISNph15.
References
1] F. Pfeiffer (2013) Direct submission
2] Jaakkola S.T., Pfeiffer F., Ravantti J.J., Guo Q., Liu Y., Chen X., Ma H., Yang C., Oksanen H.M., Bamford D.H. (2015) Environ Microbiol. doi: 10.1111/1462-2920.13130
2] Jaakkola S.T., Pfeiffer F., Ravantti J.J., Guo Q., Liu Y., Chen X., Ma H., Yang C., Oksanen H.M., Bamford D.H. (2015) Environ Microbiol. doi: 10.1111/1462-2920.13130