ISHhu12

  • Family IS200/IS605
  • Group IS1341
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
LN831304 ND Halobacterium hubeiense
Halobacterium hubeiense
DNA section
IS Length : 1364 bp

Ends


Left end : CAAGTGGTACAAGGCGACTGCCTCGGGGCTTGACCCCGAGGGTGAAGCCGATGACTTTCCAGTATTTTAACATCCTCCAACTCCCAACCGAATATGAAGG II struct. : Yes
Right end : AGACTGCGCTCCCTACGTTCACACCTCAACGCGAGGCAGTGGATGCAAAGCGCGTCGTTGAAGCAGGAAGCCCCGAGGCTTGACCTCGGGGCCAGTTCAC II struct. : Yes

Insertion site


Left flankLE cleavage siteRight flankRE cleavage site
CAGGCTGACGGTTGTACGGATTGCTTGtcac

DNA sequence

CAAGTGGTACAAGGCGACTGCCTCGGGGCTTGACCCCGAGGGTGAAGCCGATGACTTTCCAGTATTTTAACATCCTCCAACTCCCAACCGAATATGAAGG
AACCGATGACCCTCACGCTCCGCTTCCGCGCCTATCTTTCCGATGCTGTGGCGAGCGAAGCGTGGCGACACATTGACATCCTCAGACAAATCCGCAACCA
CGCAGTCAGAGACTACTACACGGCAGACTACACCGATAAACCGTCAGAATACGACCAGCACAAGAAATTCACCGACTGGAAACAACACTGGTCAGTGTTC
AGTGACCCGTCCGCTCACGCTGCTCAACAGGCAATCAGTCAAATCCACGACGATCTCGATGGCCTCGAAGAAAAACAAAATAACGGGTATGATGTTGGTC
GGTTGCGGTGGCAAGGAAGCGGTGAGTTTCGGTCGATATCGTACAATCAGTCCAGTCGCTTCAACGTAGATCACAACACGGGCGACGACCAATTCGTACG
ACTCCGACTCGAAAAACTCGGCTGGTTCAAAATCCGAGCGAACCGCCGCGTTCCACCGGCAGACGACATCAACGAAGCCATCCTGAAAAAACAACCCACC
GGCGAATGGTACGTCTCACTCGTCGTTGATGACGCAACCCAACCCAGTGAGAAACCAGCACTCACCGAGATTGACCCGGACGACTGCATCGGCGTTGACG
TTGGCATCACAAGTTACATCCATACGTCCGAGAATCTCACCGTAGATACGCTGGATCTCTCCGACGAGTACGACCGGTACGCCCGTAAGCAACGGGGTCT
TGCCCGGAAAGAACATGGGTCCAGTAATTGGGAGGCGCAGCGACAGAAGGTAGCGAAAGCGAAGCGGAAGATCAAACGGAAGGTTCTGGATTTCCAGCAT
AAGTTGACGACGTGGCTCGTCAAGGCGTATGATGTGGTCGCGGTGGAAGACCTGGATGTGAAGCCGATGCTGGAAGGCAGTCACAGTGCGAAGAACAAGC
AGGATGCGGCGTGGGCACGCTTCCGAGAGTTACTGGAGTACAAGGCGGAGGTTCACGGAACACACGTTATATCGGTGGAACCTGCTGGTACGACGAAAGA
GTGCGCGTCGTGCGGTGTTTCAACGGATAAGCCGTTGTGGGTGCGTGAGCATTCGTGTCCGGCGTGCGGGCACACCGACGACCGCGATTTGAACGCAGCA
AAGAATATTTTGAATCGTGGGTTACGGCAGTTAGGGGCGGGACGCTCCGAATCAACGCCTGTGCAGACTGCGCTCCCTACGTTCACACCTCAACGCGAGG
CAGTGGATGCAAAGCGCGTCGTTGAAGCAGGAAGCCCCGAGGCTTGACCTCGGGGCCAGTTCAC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1242 bp413 aa1061347+No
ORF function : Accessory Gene
AG : TnpB

ORF sequence :

MTLTLRFRAYLSDAVASEAWRHIDILRQIRNHAVRDYYTADYTDKPSEYDQHKKFTDWKQHWSVFSDPSAHAAQQAISQIHDDLDGLEEKQNNGYDVGRL
RWQGSGEFRSISYNQSSRFNVDHNTGDDQFVRLRLEKLGWFKIRANRRVPPADDINEAILKKQPTGEWYVSLVVDDATQPSEKPALTEIDPDDCIGVDVG
ITSYIHTSENLTVDTLDLSDEYDRYARKQRGLARKEHGSSNWEAQRQKVAKAKRKIKRKVLDFQHKLTTWLVKAYDVVAVEDLDVKPMLEGSHSAKNKQD
AAWARFRELLEYKAEVHGTHVISVEPAGTTKECASCGVSTDKPLWVREHSCPACGHTDDRDLNAAKNILNRGLRQLGAGRSESTPVQTALPTFTPQREAV
DAKRVVEAGSPEA

 

Blast result :
Comments
ISHhu12 is 87% aa (ORFB) similar to ISNph15.
References
1] F. Pfeiffer (2013) Direct submission
2] Jaakkola S.T., Pfeiffer F., Ravantti J.J., Guo Q., Liu Y., Chen X., Ma H., Yang C., Oksanen H.M., Bamford D.H. (2015) Environ Microbiol. doi: 10.1111/1462-2920.13130