ISAs30
- Family IS4
- Group IS4
Isoform Synonym(s)
| Accession number | Transposition | Origin | Host |
|---|---|---|---|
| CP022426 | ND | Aeromonas salmonicida | Aeromonas salmonicida Aeromonas salmonicida subsp. pectinolytica 34mel |
DNA section
IS Length : 1426 bp
Ends
IR Length : 16/18
IRL : TAATGCCGATCAGTTAAGGATCCATTGACCGATCCTGCTGATGTGTAAAA
IRR : TAATGCCAGTCAGTTAAGCCTGACTGGCATTGTTTTTATTGGCTTTTTTT
Insertion site
| Left flank | Direct repeat | Right flank | DR Length |
|---|---|---|---|
| AATAAACAGG | CCCTTCATGGGC | CTGTTTTGAT | 12 |
| GTAAAAAAGC | CCCTCGCGGGGC | TTTTTTCATT | 12 |
| CAAAAACAGG | GCCTGATGGCCC | TGTTTTTGTT | 12 |
| ACGAAAAGAC | CGCCCGATGGGC | GGTCTTTTGC | 12 |
| TAAAAAGGAG | CGCAAACTGGCG | CTCCTTTTTA | 12 |
| GCGAAAGGCG | GACCCTATGCCC | TCTCCATCAA | 12 |
| TAAAAAGAGC | GACCCAAGGGTC | GCTCTTTTTC | 12 |
| TAAAAAAGGG | CGGCGTGAAGCC | GCCCTTTTCT | 12 |
| AGTAAAAGGA | CCCGAAGGTCCT | TTGCTGTTTG | 12 |
| TGAAAAAGAG | GGCCTTTTGGCC | CTCTTTTCTA | 12 |
| TAATTCAGAG | GGGTCGGGGCCT | GCCATTTGGC | 12 |
| TAAAAAGGGC | TCCTGTCGGGA | GCCCTTTTTC | 11 |
| GAGACAGGGG | CCCCCGATGGA | CGGCTATTTT | 11 |
| TGAAAAAGGG | ACCTTTCGGTC | CCTTTTTCTA | 11 |
| TCAAAAAAGG | CGCCAAAGGGC | GCCGTTTTTC | 11 |
| ACAAAAAAGG | CGAACATTATGTT | CGCCTTTTTT | 13 |
DNA sequence
TAATGCCGATCAGTTAAGGATCCATTGACCGATCCTGCTGATGTGTAAAAATCCGAAACCTGTTGATTTGGTTTCGGATTTTTTATGCGTATCGAACAGG
CTCTCGATTTCCTTCACGCCAGCAATGCTGCTCAGTTTGAGTCACTCTCCGATCTCATTCCCAACGAGCTCATCACTACCCTGCTCGCCGAAGAGGGCGT
CGCTACCCTGCGCCGTCGCCGCATGCCCATGGAGCGTCTGGTCTGGGCCATCATCGGCATGGCCATGTTCCGCCACGTCCCCATGACCCAGCTGGTCAAT
CAGCTCGATATCCTCTTGCCCGGTGACCGCCCCTTTGTCGCCCCCAGCGCCTTCCTGCAAGCTCGCCAAAAGCTTGGCCACAAGAGCATTGAGCGGCTGT
TTCACGAAACCGCCACAGGCTGGCACCAGCAGGCCAATCACCCCGGCTGGGCCGGGCTGCAACTGCTCGCCGTTGATGGCGTGATGTGGCGCACGCCTGA
TACCCCGGACAATGCCGCCGCCTTTGCCAAGCCCGGTACCCAGCATGGGGAGACCGCTTATCCGCAGGTGCGCATGCTCTGCCAGATGGAGCTGACCAGT
CATCTGCTTGTTCAGGCTGTCATGGAGAGCTGCGCCGTCAACGAAATGGCGCTGGCCGAACAGCTCATTGCACGCACACCGGACCACTCGCTCACCCTGT
TCGACAAGGGGTTTTACTCCCTCGGTCTGCTACACGCCTGGCAAACTGCTGGCAGCGAGCGTCACTGGCTGCTGCCGCTCAAAAAGGGCACGCAGTACGA
GGTGGTACATAAGCTGGGGCGCCAGGATGTACTGGTGCAGCTCAAGACCAGTCCACAGGCACGCAAGAAGTGGCCGCAACTGCCGGACACAGTGGAAGCC
CGCTTGCTGACCCGCACTATCAACGGCAAGGAGCGGCAGGTACTGACCTCAATGGTCGACCCGATGCGCTTTCCGGGTGCCGAGATTGTCGAGCTCTACA
GCCATCGCTGGGAAATCGAGTTGGGCTATCGGGAGATGAAGCACAGCCTGCAACAACACCGACTGACCCTGCGTAGCAAGAAGGCAATGGGGATACGGCA
AGAGCTGTGGGGCGTGTTGTTGGCGTACAACCTGCTGCGCAGCCAGATGGTGAAGATGGCGGCGAGTCTAAAGGGATACACAGCAAGCCAGCTGAGCTTT
CACATGGCATCGGTGTACCTCATCCATGAACTGAGTTGCATGCCGTACATGTCGCCGGGGACTATCCCGAAGCGGGTGGCGGAGCTGGAGCAGCAGGCGG
GGCAGTTTGTGCTGCCGGCACGAAGGGAACGAAGCTACCCCCGCTGCGTGAAGCCAAGGCCACAGAAATACAGTGTAAAAAAAGCCAATAAAAACAATGC
CAGTCAGGCTTAACTGACTGGCATTA
CTCTCGATTTCCTTCACGCCAGCAATGCTGCTCAGTTTGAGTCACTCTCCGATCTCATTCCCAACGAGCTCATCACTACCCTGCTCGCCGAAGAGGGCGT
CGCTACCCTGCGCCGTCGCCGCATGCCCATGGAGCGTCTGGTCTGGGCCATCATCGGCATGGCCATGTTCCGCCACGTCCCCATGACCCAGCTGGTCAAT
CAGCTCGATATCCTCTTGCCCGGTGACCGCCCCTTTGTCGCCCCCAGCGCCTTCCTGCAAGCTCGCCAAAAGCTTGGCCACAAGAGCATTGAGCGGCTGT
TTCACGAAACCGCCACAGGCTGGCACCAGCAGGCCAATCACCCCGGCTGGGCCGGGCTGCAACTGCTCGCCGTTGATGGCGTGATGTGGCGCACGCCTGA
TACCCCGGACAATGCCGCCGCCTTTGCCAAGCCCGGTACCCAGCATGGGGAGACCGCTTATCCGCAGGTGCGCATGCTCTGCCAGATGGAGCTGACCAGT
CATCTGCTTGTTCAGGCTGTCATGGAGAGCTGCGCCGTCAACGAAATGGCGCTGGCCGAACAGCTCATTGCACGCACACCGGACCACTCGCTCACCCTGT
TCGACAAGGGGTTTTACTCCCTCGGTCTGCTACACGCCTGGCAAACTGCTGGCAGCGAGCGTCACTGGCTGCTGCCGCTCAAAAAGGGCACGCAGTACGA
GGTGGTACATAAGCTGGGGCGCCAGGATGTACTGGTGCAGCTCAAGACCAGTCCACAGGCACGCAAGAAGTGGCCGCAACTGCCGGACACAGTGGAAGCC
CGCTTGCTGACCCGCACTATCAACGGCAAGGAGCGGCAGGTACTGACCTCAATGGTCGACCCGATGCGCTTTCCGGGTGCCGAGATTGTCGAGCTCTACA
GCCATCGCTGGGAAATCGAGTTGGGCTATCGGGAGATGAAGCACAGCCTGCAACAACACCGACTGACCCTGCGTAGCAAGAAGGCAATGGGGATACGGCA
AGAGCTGTGGGGCGTGTTGTTGGCGTACAACCTGCTGCGCAGCCAGATGGTGAAGATGGCGGCGAGTCTAAAGGGATACACAGCAAGCCAGCTGAGCTTT
CACATGGCATCGGTGTACCTCATCCATGAACTGAGTTGCATGCCGTACATGTCGCCGGGGACTATCCCGAAGCGGGTGGCGGAGCTGGAGCAGCAGGCGG
GGCAGTTTGTGCTGCCGGCACGAAGGGAACGAAGCTACCCCCGCTGCGTGAAGCCAAGGCCACAGAAATACAGTGTAAAAAAAGCCAATAAAAACAATGC
CAGTCAGGCTTAACTGACTGGCATTA
Protein section
ORF number : 1
ORF 1
| Length | Begin | End | Strand | Fusion ORF | |
|---|---|---|---|---|---|
| 1329 bp | 442 aa | 85 | 1413 | + | No |
Chemistry : DDE
ORF sequence :
MRIEQALDFLHASNAAQFESLSDLIPNELITTLLAEEGVATLRRRRMPMERLVWAIIGMAMFRHVPMTQLVNQLDILLPGDRPFVAPSAFLQARQKLGHK
SIERLFHETATGWHQQANHPGWAGLQLLAVDGVMWRTPDTPDNAAAFAKPGTQHGETAYPQVRMLCQMELTSHLLVQAVMESCAVNEMALAEQLIARTPD
HSLTLFDKGFYSLGLLHAWQTAGSERHWLLPLKKGTQYEVVHKLGRQDVLVQLKTSPQARKKWPQLPDTVEARLLTRTINGKERQVLTSMVDPMRFPGAE
IVELYSHRWEIELGYREMKHSLQQHRLTLRSKKAMGIRQELWGVLLAYNLLRSQMVKMAASLKGYTASQLSFHMASVYLIHELSCMPYMSPGTIPKRVAE
LEQQAGQFVLPARRERSYPRCVKPRPQKYSVKKANKNNASQA
SIERLFHETATGWHQQANHPGWAGLQLLAVDGVMWRTPDTPDNAAAFAKPGTQHGETAYPQVRMLCQMELTSHLLVQAVMESCAVNEMALAEQLIARTPD
HSLTLFDKGFYSLGLLHAWQTAGSERHWLLPLKKGTQYEVVHKLGRQDVLVQLKTSPQARKKWPQLPDTVEARLLTRTINGKERQVLTSMVDPMRFPGAE
IVELYSHRWEIELGYREMKHSLQQHRLTLRSKKAMGIRQELWGVLLAYNLLRSQMVKMAASLKGYTASQLSFHMASVYLIHELSCMPYMSPGTIPKRVAE
LEQQAGQFVLPARRERSYPRCVKPRPQKYSVKKANKNNASQA
Blast result :
Comments
ISAs30 is 71% aa similar to ISSba6.
References
1] F. Pfeiffer (2015) Direct submission
2] F. Pfeiffer, M.A. Zamora-Lagos, M. Blettinger, A. Yeroslaviz, A. Dahl, S. Gruber, B.H. Habermann (2018) BMC Genomics 19 (1), 20
2] F. Pfeiffer, M.A. Zamora-Lagos, M. Blettinger, A. Yeroslaviz, A. Dahl, S. Gruber, B.H. Habermann (2018) BMC Genomics 19 (1), 20