ISAs16

  • Family IS110
  • Group IS1111
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
CP022426 ND Aeromonas salmonicida
Aeromonas salmonicida
Aeromonas salmonicida subsp. pectinolytica 34mel
DNA section
IS Length : 1404 bp

Ends


IR Length : 12

IRL : taatgggATGGTCGCCCCTCCCCAAACGGCATCTAACGTGCCAATGTGGC
IRR : ----tagATGGTCGCCCCGGTTTGCCAAGCCCTCAATCAATGAAAGTGAG

Insertion site


Left flankDirect repeatRight flankDR Length
CCTGTTAACACTTCGACCAT0

DNA sequence

TAATGGGATGGTCGCCCCTCCCCAAACGGCATCTAACGTGCCAATGTGGCAAAGATATTCCCACTGACTGTAGAGAGGCGAACGCTATGAAAATCACCAC
GATTGGCATCGATTTGGCCAAAAATGTCCTGCAGGTTCATGGCGTGGATGAGCGCGGCAAAGTGCTTCTGAAAAAGCAGCTCAAGCGGGACCAGATGATC
ACTTTCTTTGCCAACTTGCCCGCCTGTCTGATCGGCATGGAAGCTTGTGGTAGCGCCCATTTCTGGGCCAACAAGCTGCAAGGTCTGGGGCATACCGTCA
AGCTGATGGCACCTCAATTCGTCAAACCCTACGTCAAAACAAACAAGAATGATGCCCCCGATGCCGAGGCCATTTACGAAGCGGTAACCCGGCCAACCAT
GCGCTTCGTGCCGATAAAGAGCAGCGAACAGTTAGCCGTCCTAGCCCTGCATCGTGCTAGGCAGGGGTTCGTCAAGGCCAGGACCGCCCAGGCCAACCAG
ATCCGAGGACTTTTGGCGGAATATGGGCTCATCATCCCCCAGGGCATCACCCACATCGGCCAGCGTGTTCCCGAATTCCTGGAGGACAGTGAAAACTGCT
TGCCAGGGACGTTTCGCCTGTTGCTGATGCGACTCCACGAGCACCTCAAGGAACTCAATAAGCAGGTCAACGAGCTGGAGGAAGCGAGCGTACGCTGGCA
TCGAGACAGTGTCGCCAGCCAAACATTGGCACAGCTACCCGGTATAGGTCCTATCACCACCAGCGCCCTGGTGGCCTCCATTGGCAATCCGAGAAATTTC
CAGAATGGCAGGCAGTTGGCCGCGTGGCTGGGGTTGGTGCCACGGCAACACTCCAGCGGTGGCAAGCAGACCCTGCTGGGGATCAGCAAGCGCGGCGACA
GCTACTTGCGCACACTGTTAATTCATGGCGCTCGGGCGGTGCTACGAGTAGCAGAACACAAGGAGTCGTTTGCAGGAAGCTGGTTGGCCGGGGTGATGGC
ACGGCGCAACCCTAACGTGGCGGCGGTAGCGCAGACGGCTAGAATCATCTGGGCATTGCTGGCACACGACAGAAAATATGATGCTCACAATGGCATGGCC
GCATGAAAAACAGGTTTAGTAAGGGCGGGCTGAAAGCCCTGCAACAAGACGGTTGGCAATGATAATGAAGCACAGATTGCGCAGGCAATCATGAAGTGAT
GGCGAGACAGGTCAGACCGTGGCTGGCAAAACCCGGTGTTAACACAGCACGTCGTTAAGTGCGCTGTAAGTGATAGAGGAGCCAGTCAGCGAATTCCATC
AGGGATAGAGGCTGTTGCCTCGGTGAAATCCGGATCTATGGCTGCAATCTCCACCTGACTCACTTTCATTGATTGAGGGCTTGGCAAACCGGGGCGACCA
TCTA
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1020 bp339 aa871106+No
ORF function : Transposase
Chemistry : DEDD

ORF sequence :

MKITTIGIDLAKNVLQVHGVDERGKVLLKKQLKRDQMITFFANLPACLIGMEACGSAHFWANKLQGLGHTVKLMAPQFVKPYVKTNKNDAPDAEAIYEAV
TRPTMRFVPIKSSEQLAVLALHRARQGFVKARTAQANQIRGLLAEYGLIIPQGITHIGQRVPEFLEDSENCLPGTFRLLLMRLHEHLKELNKQVNELEEA
SVRWHRDSVASQTLAQLPGIGPITTSALVASIGNPRNFQNGRQLAAWLGLVPRQHSSGGKQTLLGISKRGDSYLRTLLIHGARAVLRVAEHKESFAGSWL
AGVMARRNPNVAAVAQTARIIWALLAHDRKYDAHNGMAA

 

Blast result :
Comments
ISAs16 is 81% aa similar to ISBcen3.
References
1] F. Pfeiffer (2015) Direct submission
2] F. Pfeiffer, M.A. Zamora-Lagos, M. Blettinger, A. Yeroslaviz, A. Dahl, S. Gruber, B.H. Habermann (2018) BMC Genomics 19 (1), 20