ISHhu10

  • Family IS200/IS605
  • Group IS1341
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
LN831303 ND Halobacterium hubeiense
Halobacterium hubeiense
DNA section
IS Length : 1386 bp

Ends


Left end : AGTGGTACAGCGCGGAAACCCACCCCTTTAGGGGTGGGAGGAAGCGCGTACGCTCCGTGTATCCAACCACCGACTACGGCAGGGCCGACTCCCCAATACT II struct. : Yes
Right end : ACGCTGAACGCGAACGGAGCGTATGACCCTCCTGCCGAAGATTCGGCCAGAGCGGGAGTCCACGCTGAAAGCCCACCCCTTTAGGGGTGGGTTAGCTTAC II struct. : Yes

Insertion site


Left flankLE cleavage siteRight flankRE cleavage site
GTGGCTAATCACTCGTCGAAGCCCCTGAttac
GGTGGAGACAGTTCGTGCTTGAGTGGTAttac

DNA sequence

AGTGGTACAGCGCGGAAACCCACCCCTTTAGGGGTGGGAGGAAGCGCGTACGCTCCGTGTATCCAACCACCGACTACGGCAGGGCCGACTCCCCAATACT
TTTTAATCACCAAGATTACATATGATGTATGGAGAAGCGGCGTACTGTCCCCATTGCACTCAACGTGGACAGCCACAGCGCCGCACTCCTCGAAGACACC
GTCGACGAATTTCTGTGGGCCGCCAACTACGTGACACGCCACGCGTTCGACGGTGAATACGTCACCACGAGCAAGACCACGCTCCATGACGACACCTACG
AGGACGTGCGCGACGAGACAGCGTTACACAGCAACCACGTCCAAGCCGCCCGCAACAAGGCCGCCGAAGCCTGCAAGAGCGTGGTCGAGAAGTGGAAACA
GGGCAAGAAGGGATCGATGCCTCACTTCACTAGCCCTCACCTCGTCTACGACCACCGCACCGCCACCTTCCACGACGAGTACGTGTCGCTAGCAACAGTT
GACGGTCGCATCGAAGCCGATTACGTCCTTCCAGACGAGGAGCGAGACACGCCCCACGCCGAGTATTTCTTTTCCGACGAGTACGAAACCACAGGGGCAG
AACTGCACTACAGTAACGGCAACTGGATGCTCCACATCCACTGCAAGACGGATGTGGAGTCTGATACGCCGGAACAAGCTACCGAGAACGGAACGGTTCT
TGGGGTCGACCTCGGCGTGACGAATCTTGCAGTTACCTCAACTGGCTCGTTCTGGACTGGTGACGAGTTCGACCACTGGCGGCGCGAATACGAGACCCGT
CGTGGGTCGCTCCAACAGTGCGGGACACGGTGGGCGCACGAGAACATCCAATCGGTCGGACGCAAAGAGGAAGGTCGGTTCACGATCACGCTCCACCGTA
TCTCGAACGATTTGGTGGCTGAAGCCCGCACCCACGGCTGTTCGGTGATTGCGTTCGAGAACTTGACCGATATTCGTGAGCGAACCGGCGCATCGTGGGG
GCACAAATGGGCGTTCAACCGCCTGTACGAGTACGTCGAATACAAAGCCGCAGAGTACGGTATCAACGTAGCACAGGTTGACCCGGAGAACACGTCACGG
CGATGTTCGACATGTGGGTTCACACACCCGGACAACCGCGACAGAGAGGACTTCGAGTGCCTGAAGTGCAGCTACGAGAACCACGCCGACTACAACGCCG
CCAAGAACATCGGCTTGCGGTATCTCCGCCGGAACCAAACTGGCTCCGGTGGAGGCGCACCCGTAGGCGTGCGCTTGAACAGCGGGACGCTGAACGCGAA
CGGAGCGTATGACCCTCCTGCCGAAGATTCGGCCAGAGCGGGAGTCCACGCTGAAAGCCCACCCCTTTAGGGGTGGGTTAGCTTAC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1242 bp413 aa1301371+No
ORF function : Accessory Gene
AG : TnpB

ORF sequence :

MEKRRTVPIALNVDSHSAALLEDTVDEFLWAANYVTRHAFDGEYVTTSKTTLHDDTYEDVRDETALHSNHVQAARNKAAEACKSVVEKWKQGKKGSMPHF
TSPHLVYDHRTATFHDEYVSLATVDGRIEADYVLPDEERDTPHAEYFFSDEYETTGAELHYSNGNWMLHIHCKTDVESDTPEQATENGTVLGVDLGVTNL
AVTSTGSFWTGDEFDHWRREYETRRGSLQQCGTRWAHENIQSVGRKEEGRFTITLHRISNDLVAEARTHGCSVIAFENLTDIRERTGASWGHKWAFNRLY
EYVEYKAAEYGINVAQVDPENTSRRCSTCGFTHPDNRDREDFECLKCSYENHADYNAAKNIGLRYLRRNQTGSGGGAPVGVRLNSGTLNANGAYDPPAED
SARAGVHAESPPL

 

Blast result :
Comments
ISHhu10 is 89% aa (ORFB) similar to ISHarch1.
References
1] F. Pfeiffer (2013) Direct submission
2] Jaakkola S.T., Pfeiffer F., Ravantti J.J., Guo Q., Liu Y., Chen X., Ma H., Yang C., Oksanen H.M., Bamford D.H. (2015) Environ Microbiol. doi: 10.1111/1462-2920.13130