ISHhu10
- Family IS200/IS605
- Group IS1341
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
LN831303 | ND | Halobacterium hubeiense | Halobacterium hubeiense |
DNA section
IS Length : 1386 bp
Ends
Left end : AGTGGTACAGCGCGGAAACCCACCCCTTTAGGGGTGGGAGGAAGCGCGTACGCTCCGTGTATCCAACCACCGACTACGGCAGGGCCGACTCCCCAATACT II struct. : Yes
Right end : ACGCTGAACGCGAACGGAGCGTATGACCCTCCTGCCGAAGATTCGGCCAGAGCGGGAGTCCACGCTGAAAGCCCACCCCTTTAGGGGTGGGTTAGCTTAC II struct. : Yes
Insertion site
Left flank | LE cleavage site | Right flank | RE cleavage site |
---|---|---|---|
GTGGCTAATCAC | TCGT | CGAAGCCCCTGA | ttac |
GGTGGAGACAGT | TCGT | GCTTGAGTGGTA | ttac |
DNA sequence
AGTGGTACAGCGCGGAAACCCACCCCTTTAGGGGTGGGAGGAAGCGCGTACGCTCCGTGTATCCAACCACCGACTACGGCAGGGCCGACTCCCCAATACT
TTTTAATCACCAAGATTACATATGATGTATGGAGAAGCGGCGTACTGTCCCCATTGCACTCAACGTGGACAGCCACAGCGCCGCACTCCTCGAAGACACC
GTCGACGAATTTCTGTGGGCCGCCAACTACGTGACACGCCACGCGTTCGACGGTGAATACGTCACCACGAGCAAGACCACGCTCCATGACGACACCTACG
AGGACGTGCGCGACGAGACAGCGTTACACAGCAACCACGTCCAAGCCGCCCGCAACAAGGCCGCCGAAGCCTGCAAGAGCGTGGTCGAGAAGTGGAAACA
GGGCAAGAAGGGATCGATGCCTCACTTCACTAGCCCTCACCTCGTCTACGACCACCGCACCGCCACCTTCCACGACGAGTACGTGTCGCTAGCAACAGTT
GACGGTCGCATCGAAGCCGATTACGTCCTTCCAGACGAGGAGCGAGACACGCCCCACGCCGAGTATTTCTTTTCCGACGAGTACGAAACCACAGGGGCAG
AACTGCACTACAGTAACGGCAACTGGATGCTCCACATCCACTGCAAGACGGATGTGGAGTCTGATACGCCGGAACAAGCTACCGAGAACGGAACGGTTCT
TGGGGTCGACCTCGGCGTGACGAATCTTGCAGTTACCTCAACTGGCTCGTTCTGGACTGGTGACGAGTTCGACCACTGGCGGCGCGAATACGAGACCCGT
CGTGGGTCGCTCCAACAGTGCGGGACACGGTGGGCGCACGAGAACATCCAATCGGTCGGACGCAAAGAGGAAGGTCGGTTCACGATCACGCTCCACCGTA
TCTCGAACGATTTGGTGGCTGAAGCCCGCACCCACGGCTGTTCGGTGATTGCGTTCGAGAACTTGACCGATATTCGTGAGCGAACCGGCGCATCGTGGGG
GCACAAATGGGCGTTCAACCGCCTGTACGAGTACGTCGAATACAAAGCCGCAGAGTACGGTATCAACGTAGCACAGGTTGACCCGGAGAACACGTCACGG
CGATGTTCGACATGTGGGTTCACACACCCGGACAACCGCGACAGAGAGGACTTCGAGTGCCTGAAGTGCAGCTACGAGAACCACGCCGACTACAACGCCG
CCAAGAACATCGGCTTGCGGTATCTCCGCCGGAACCAAACTGGCTCCGGTGGAGGCGCACCCGTAGGCGTGCGCTTGAACAGCGGGACGCTGAACGCGAA
CGGAGCGTATGACCCTCCTGCCGAAGATTCGGCCAGAGCGGGAGTCCACGCTGAAAGCCCACCCCTTTAGGGGTGGGTTAGCTTAC
TTTTAATCACCAAGATTACATATGATGTATGGAGAAGCGGCGTACTGTCCCCATTGCACTCAACGTGGACAGCCACAGCGCCGCACTCCTCGAAGACACC
GTCGACGAATTTCTGTGGGCCGCCAACTACGTGACACGCCACGCGTTCGACGGTGAATACGTCACCACGAGCAAGACCACGCTCCATGACGACACCTACG
AGGACGTGCGCGACGAGACAGCGTTACACAGCAACCACGTCCAAGCCGCCCGCAACAAGGCCGCCGAAGCCTGCAAGAGCGTGGTCGAGAAGTGGAAACA
GGGCAAGAAGGGATCGATGCCTCACTTCACTAGCCCTCACCTCGTCTACGACCACCGCACCGCCACCTTCCACGACGAGTACGTGTCGCTAGCAACAGTT
GACGGTCGCATCGAAGCCGATTACGTCCTTCCAGACGAGGAGCGAGACACGCCCCACGCCGAGTATTTCTTTTCCGACGAGTACGAAACCACAGGGGCAG
AACTGCACTACAGTAACGGCAACTGGATGCTCCACATCCACTGCAAGACGGATGTGGAGTCTGATACGCCGGAACAAGCTACCGAGAACGGAACGGTTCT
TGGGGTCGACCTCGGCGTGACGAATCTTGCAGTTACCTCAACTGGCTCGTTCTGGACTGGTGACGAGTTCGACCACTGGCGGCGCGAATACGAGACCCGT
CGTGGGTCGCTCCAACAGTGCGGGACACGGTGGGCGCACGAGAACATCCAATCGGTCGGACGCAAAGAGGAAGGTCGGTTCACGATCACGCTCCACCGTA
TCTCGAACGATTTGGTGGCTGAAGCCCGCACCCACGGCTGTTCGGTGATTGCGTTCGAGAACTTGACCGATATTCGTGAGCGAACCGGCGCATCGTGGGG
GCACAAATGGGCGTTCAACCGCCTGTACGAGTACGTCGAATACAAAGCCGCAGAGTACGGTATCAACGTAGCACAGGTTGACCCGGAGAACACGTCACGG
CGATGTTCGACATGTGGGTTCACACACCCGGACAACCGCGACAGAGAGGACTTCGAGTGCCTGAAGTGCAGCTACGAGAACCACGCCGACTACAACGCCG
CCAAGAACATCGGCTTGCGGTATCTCCGCCGGAACCAAACTGGCTCCGGTGGAGGCGCACCCGTAGGCGTGCGCTTGAACAGCGGGACGCTGAACGCGAA
CGGAGCGTATGACCCTCCTGCCGAAGATTCGGCCAGAGCGGGAGTCCACGCTGAAAGCCCACCCCTTTAGGGGTGGGTTAGCTTAC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1242 bp | 413 aa | 130 | 1371 | + | No |
AG : TnpB
ORF sequence :
MEKRRTVPIALNVDSHSAALLEDTVDEFLWAANYVTRHAFDGEYVTTSKTTLHDDTYEDVRDETALHSNHVQAARNKAAEACKSVVEKWKQGKKGSMPHF
TSPHLVYDHRTATFHDEYVSLATVDGRIEADYVLPDEERDTPHAEYFFSDEYETTGAELHYSNGNWMLHIHCKTDVESDTPEQATENGTVLGVDLGVTNL
AVTSTGSFWTGDEFDHWRREYETRRGSLQQCGTRWAHENIQSVGRKEEGRFTITLHRISNDLVAEARTHGCSVIAFENLTDIRERTGASWGHKWAFNRLY
EYVEYKAAEYGINVAQVDPENTSRRCSTCGFTHPDNRDREDFECLKCSYENHADYNAAKNIGLRYLRRNQTGSGGGAPVGVRLNSGTLNANGAYDPPAED
SARAGVHAESPPL
TSPHLVYDHRTATFHDEYVSLATVDGRIEADYVLPDEERDTPHAEYFFSDEYETTGAELHYSNGNWMLHIHCKTDVESDTPEQATENGTVLGVDLGVTNL
AVTSTGSFWTGDEFDHWRREYETRRGSLQQCGTRWAHENIQSVGRKEEGRFTITLHRISNDLVAEARTHGCSVIAFENLTDIRERTGASWGHKWAFNRLY
EYVEYKAAEYGINVAQVDPENTSRRCSTCGFTHPDNRDREDFECLKCSYENHADYNAAKNIGLRYLRRNQTGSGGGAPVGVRLNSGTLNANGAYDPPAED
SARAGVHAESPPL
Blast result :
Comments
ISHhu10 is 89% aa (ORFB) similar to ISHarch1.
References
1] F. Pfeiffer (2013) Direct submission
2] Jaakkola S.T., Pfeiffer F., Ravantti J.J., Guo Q., Liu Y., Chen X., Ma H., Yang C., Oksanen H.M., Bamford D.H. (2015) Environ Microbiol. doi: 10.1111/1462-2920.13130
2] Jaakkola S.T., Pfeiffer F., Ravantti J.J., Guo Q., Liu Y., Chen X., Ma H., Yang C., Oksanen H.M., Bamford D.H. (2015) Environ Microbiol. doi: 10.1111/1462-2920.13130