ISHhu8
- Family IS200/IS605
- Group IS1341
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
LN831302 | ND | Halobacterium hubeiense | Halobacterium hubeiense |
DNA section
IS Length : 1420 bp
Ends
Left end : AGAGATTGCAAGGCGGATACCCCGACCCTTGAGGTCGGGGAGGAAGCCGACACTCGATGACGCAAATCACACGCAATGGCAAGGCCGACTCCCCACGCTT II struct. : Yes
Right end : GGGACGCTGAACGCGAATGGCGATTACACGCCTTCCGCCTTGCGCGGATAGAGCGGGAGTCCACTGACAAGCCTCGGGGCTTGACCCCGAGGCGGTTGAC II struct. : Yes
Insertion site
Left flank | LE cleavage site | Right flank | RE cleavage site |
---|---|---|---|
GCCTCGTACTGCT | TCAT | ACGTGGTCAACT | tgac |
DNA sequence
AGAGATTGCAAGGCGGATACCCCGACCCTTGAGGTCGGGGAGGAAGCCGACACTCGATGACGCAAATCACACGCAATGGCAAGGCCGACTCCCCACGCTT
TAAGAAATACTTTCAAGTATCTCTAATAGCACTAATGAAGTATGGAGGTCGTCCGCAACATCCAGATAAAGCTCGACGTTCCCGAGGACGTTCACAGCGT
TCTCGATGAGACGTTCGAGCAATTCCGTCAAGCGGCGCAACACGTCGCTGACGCTGGATGGAGCGGCGACCCCACGGAAATCGAGGACACGAAGAACACG
CTCCACGACCAAACCTATTCAGAGGTTCGGGAGCAGACAAGTCTGCAAGCCAGCCTCGCCCAATCCGCTCGCAATCTCGCCGCCGACGCACTCGGCAACT
GTAAAGACCGCATCCTCGACGACGGCAAGAAGGCAAGCAAACCAGAGTTTCGAGGTAGTGTCGTCGTGTATAACGAGCGCACCATCACCTACAATGACGA
CCACGTGACCCTCGCAACCGTGGGCGACCGCGTGACCGCCGAGTTCGTCACGCCCGACGACGAATCAGGGACACCGTTTGCGGAGTACTGGACGGAGGAC
TGGGAGAAAACCGAGGCCACGCTTCACAAGCGTGACGGGACGTACTACCTCCACGTCGCAGTCGAGAAAGACGTCGAACCCGCTGATTCTGGCAACGATT
CGACCGAGAACGGAGTGGTTCTCGGCGTTGACTTGAACGTGGACGGCTCCCTCGCCGTCACCAGCACGGGAGCGTTCCTCGGAAACGCAGACTACCTCAA
CCACAAGCGTGACGAGTACGAGCGTCGGCGCGGCAATCTCCAACAGACGGGAACTCGCTCCGCACACCTCACCATCAAAAGCATCGGATCACGGTTTGCT
CGGTGGAGTGCGGACTATCTCCACTGCGTGTCGAAAGCGATTGTGCAGGAAGCCGTGGAGAACGACTGTACGGCGATTGCGTTCGAGAACCTGACGCATA
TCCGCGAGCGTATCTCCAACGCCAGTAAGTTCCAGCAGTGGGCGTTCCGCGAACTCCAACGCCACGTCGAATACAAAGCCGAAGAGTACGGAATCGACGT
AGACGATGTTGCCCCTGCGTACACATCGCAGCGGTGTAGTCACGGCGAGTGCGGCTTCACGCATGAGGACAACCGTGATGGTGACGAGTTTGAGTGCCTG
AAGTGTGGAAAGGAACTGCACGCGGATTACAACGCCGCTCGGAATATCGGGTGGCGGCTTGTCCAGCACTGGCTCAAGTCTGGTGCTGGACGGGCCACCA
GTCAACTGGCCCTCAAGTCAGGGACGCTGAACGCGAATGGCGATTACACGCCTTCCGCCTTGCGCGGATAGAGCGGGAGTCCACTGACAAGCCTCGGGGC
TTGACCCCGAGGCGGTTGAC
TAAGAAATACTTTCAAGTATCTCTAATAGCACTAATGAAGTATGGAGGTCGTCCGCAACATCCAGATAAAGCTCGACGTTCCCGAGGACGTTCACAGCGT
TCTCGATGAGACGTTCGAGCAATTCCGTCAAGCGGCGCAACACGTCGCTGACGCTGGATGGAGCGGCGACCCCACGGAAATCGAGGACACGAAGAACACG
CTCCACGACCAAACCTATTCAGAGGTTCGGGAGCAGACAAGTCTGCAAGCCAGCCTCGCCCAATCCGCTCGCAATCTCGCCGCCGACGCACTCGGCAACT
GTAAAGACCGCATCCTCGACGACGGCAAGAAGGCAAGCAAACCAGAGTTTCGAGGTAGTGTCGTCGTGTATAACGAGCGCACCATCACCTACAATGACGA
CCACGTGACCCTCGCAACCGTGGGCGACCGCGTGACCGCCGAGTTCGTCACGCCCGACGACGAATCAGGGACACCGTTTGCGGAGTACTGGACGGAGGAC
TGGGAGAAAACCGAGGCCACGCTTCACAAGCGTGACGGGACGTACTACCTCCACGTCGCAGTCGAGAAAGACGTCGAACCCGCTGATTCTGGCAACGATT
CGACCGAGAACGGAGTGGTTCTCGGCGTTGACTTGAACGTGGACGGCTCCCTCGCCGTCACCAGCACGGGAGCGTTCCTCGGAAACGCAGACTACCTCAA
CCACAAGCGTGACGAGTACGAGCGTCGGCGCGGCAATCTCCAACAGACGGGAACTCGCTCCGCACACCTCACCATCAAAAGCATCGGATCACGGTTTGCT
CGGTGGAGTGCGGACTATCTCCACTGCGTGTCGAAAGCGATTGTGCAGGAAGCCGTGGAGAACGACTGTACGGCGATTGCGTTCGAGAACCTGACGCATA
TCCGCGAGCGTATCTCCAACGCCAGTAAGTTCCAGCAGTGGGCGTTCCGCGAACTCCAACGCCACGTCGAATACAAAGCCGAAGAGTACGGAATCGACGT
AGACGATGTTGCCCCTGCGTACACATCGCAGCGGTGTAGTCACGGCGAGTGCGGCTTCACGCATGAGGACAACCGTGATGGTGACGAGTTTGAGTGCCTG
AAGTGTGGAAAGGAACTGCACGCGGATTACAACGCCGCTCGGAATATCGGGTGGCGGCTTGTCCAGCACTGGCTCAAGTCTGGTGCTGGACGGGCCACCA
GTCAACTGGCCCTCAAGTCAGGGACGCTGAACGCGAATGGCGATTACACGCCTTCCGCCTTGCGCGGATAGAGCGGGAGTCCACTGACAAGCCTCGGGGC
TTGACCCCGAGGCGGTTGAC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1230 bp | 409 aa | 142 | 1371 | + | No |
AG : TnpB
ORF sequence :
MEVVRNIQIKLDVPEDVHSVLDETFEQFRQAAQHVADAGWSGDPTEIEDTKNTLHDQTYSEVREQTSLQASLAQSARNLAADALGNCKDRILDDGKKASK
PEFRGSVVVYNERTITYNDDHVTLATVGDRVTAEFVTPDDESGTPFAEYWTEDWEKTEATLHKRDGTYYLHVAVEKDVEPADSGNDSTENGVVLGVDLNV
DGSLAVTSTGAFLGNADYLNHKRDEYERRRGNLQQTGTRSAHLTIKSIGSRFARWSADYLHCVSKAIVQEAVENDCTAIAFENLTHIRERISNASKFQQW
AFRELQRHVEYKAEEYGIDVDDVAPAYTSQRCSHGECGFTHEDNRDGDEFECLKCGKELHADYNAARNIGWRLVQHWLKSGAGRATSQLALKSGTLNANG
DYTPSALRG
PEFRGSVVVYNERTITYNDDHVTLATVGDRVTAEFVTPDDESGTPFAEYWTEDWEKTEATLHKRDGTYYLHVAVEKDVEPADSGNDSTENGVVLGVDLNV
DGSLAVTSTGAFLGNADYLNHKRDEYERRRGNLQQTGTRSAHLTIKSIGSRFARWSADYLHCVSKAIVQEAVENDCTAIAFENLTHIRERISNASKFQQW
AFRELQRHVEYKAEEYGIDVDDVAPAYTSQRCSHGECGFTHEDNRDGDEFECLKCGKELHADYNAARNIGWRLVQHWLKSGAGRATSQLALKSGTLNANG
DYTPSALRG
Blast result :
Comments
ISHhu8 is 84% aa (ORFB) similar to ISNph19.
References
1] F. Pfeiffer (2013) Direct submission
2] Jaakkola S.T., Pfeiffer F., Ravantti J.J., Guo Q., Liu Y., Chen X., Ma H., Yang C., Oksanen H.M., Bamford D.H. (2015) Environ Microbiol. doi: 10.1111/1462-2920.13130
2] Jaakkola S.T., Pfeiffer F., Ravantti J.J., Guo Q., Liu Y., Chen X., Ma H., Yang C., Oksanen H.M., Bamford D.H. (2015) Environ Microbiol. doi: 10.1111/1462-2920.13130