ISHhu4

  • Family IS200/IS605
  • Group IS1341
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
LN831302 ND Halobacterium hubeiense
Halobacterium hubeiense
DNA section
IS Length : 1401 bp

Ends


Left end : TCGAGGTACAGCGCGGAAGCCCACCCCTTTAGGAGTGGGAGGAAGCGCGTACACTCCGTGCGACAACCCACCGACGACGACAGGACCGACTCCCCAACGC II struct. : Yes
Right end : GGGACGTTGAACGTGAGCGACGTGTCCAACGTCCACTCCAGCTTGGAGTTTGAACGGGAGTCCACCGACAAGCCCACCGCTTCAGCGGTGGGTCGCTGAC II struct. : Yes

Insertion site


Left flankLE cleavage siteRight flankRE cleavage site
GCGGGGCGCGACTCACGTCACTCTACTTtgac

DNA sequence

TCGAGGTACAGCGCGGAAGCCCACCCCTTTAGGAGTGGGAGGAAGCGCGTACACTCCGTGCGACAACCCACCGACGACGACAGGACCGACTCCCCAACGC
CGGCACAGAATGTATAAATAAAACATCCGTATGTGAATATGCGATGGAGGTCAAACGCACCGTTCCCGTCAAACTCGACGTACCCAAGGAGCGGCGCGAC
GACCTCCATCAGACCATCCAGCAGTTCAACACTGCCGCCAACTACACCATCGACCACGGCAGAGACGACGACGGCGACCTGATTCTCAACAAGTCCACCA
TCCACGACGAAGTGTACCACGACTTGCGGGACAGAACCGACCTGCCCGCAAACCTCGTGGTACGCGCCTACTCGAAAGCCGTCGAAGCGATGAAATCCAC
CGTCGCGGAGTGGGAGAACGGCAACAGCAGACCGCTCCCCTCGTTCGATGAACCGTCTGCCGTCTACGATAAACGCACCCTGACTATCAAGGACGAGTAC
GCCACGCTCTCGACGGTCAACGGGCGCGTCGAAGCCGACTTCGTGCTTGGTGAGTACCAGCGGTCGTACCTTGAAGACGACGACTACGAGAAACGGATGG
GGACACTTCATTACCGTCCCGGCGAGGATGCGTTCTACCTCCACGTCGTCATCCAAAAGCAGGTAGACCAGCGTGACGGCGACCGCGTGCTTGGCGTGGA
TTTGAACCTGAAGAACGTCGCTGTGACGAGTACGGGACGGTTCTTCGACGGCGGTGAACTGCTGTGGGGCCAGAATCACTATTTCCGCGTGAGACGGAGC
CTTCAGGACAAAGGCACCCGTTCCGCTCGGCAGGCGTTACGGCGACTGTCGGGACGGGAAAACCGCTTCGTCCTGAACCGCCTGCACAACATTTCGCGTG
GAATCGTGGAGGAAGCCCTGCGACACGGCTGTTCGTACATCGCCGTCGAAGACCTAACCCACATCCGCGAGCGAATGGATGCCCGCGACGACCAGCTGAA
ACGGCAGATGCACAACTGGGCGTTCCGCGAACTGCAAGAACAAATCGCGTACAAGGCCGCAGAGTACGGGATTCGCGTCGAGTCGGTCAACCCGGCGTTT
TCCTCGCAGACGTGCTCGAAGTGCGGCCACCAGTCCAGCACGAACCGCGACAGCGAGACGGGCTGGTTCGCGTGCAACGAGTGTGGGTACGAGGTGGACG
GCGACTACAACGCGGCGAAAAACGTCGGCCTCCGTCTGTTAGCTTTACCACCGGGCAAACGTCCCGATGGGTTGGGCAACGGTCAGCTTGCCCTGAAGTC
GGGGACGTTGAACGTGAGCGACGTGTCCAACGTCCACTCCAGCTTGGAGTTTGAACGGGAGTCCACCGACAAGCCCACCGCTTCAGCGGTGGGTCGCTGA
C
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1257 bp418 aa1441400+No
ORF function : Accessory Gene
AG : TnpB

ORF sequence :

MEVKRTVPVKLDVPKERRDDLHQTIQQFNTAANYTIDHGRDDDGDLILNKSTIHDEVYHDLRDRTDLPANLVVRAYSKAVEAMKSTVAEWENGNSRPLPS
FDEPSAVYDKRTLTIKDEYATLSTVNGRVEADFVLGEYQRSYLEDDDYEKRMGTLHYRPGEDAFYLHVVIQKQVDQRDGDRVLGVDLNLKNVAVTSTGRF
FDGGELLWGQNHYFRVRRSLQDKGTRSARQALRRLSGRENRFVLNRLHNISRGIVEEALRHGCSYIAVEDLTHIRERMDARDDQLKRQMHNWAFRELQEQ
IAYKAAEYGIRVESVNPAFSSQTCSKCGHQSSTNRDSETGWFACNECGYEVDGDYNAAKNVGLRLLALPPGKRPDGLGNGQLALKSGTLNVSDVSNVHSS
LEFERESTDKPTASAVGR

 

Blast result :
Comments
ISHhu4 is 41% aa (ORFB) similar to ISHvo19.
References
1] F. Pfeiffer (2013) Direct submission
2] Jaakkola S.T., Pfeiffer F., Ravantti J.J., Guo Q., Liu Y., Chen X., Ma H., Yang C., Oksanen H.M., Bamford D.H. (2015) Environ Microbiol. doi: 10.1111/1462-2920.13130