ISHhu4
- Family IS200/IS605
- Group IS1341
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
LN831302 | ND | Halobacterium hubeiense | Halobacterium hubeiense |
DNA section
IS Length : 1401 bp
Ends
Left end : TCGAGGTACAGCGCGGAAGCCCACCCCTTTAGGAGTGGGAGGAAGCGCGTACACTCCGTGCGACAACCCACCGACGACGACAGGACCGACTCCCCAACGC II struct. : Yes
Right end : GGGACGTTGAACGTGAGCGACGTGTCCAACGTCCACTCCAGCTTGGAGTTTGAACGGGAGTCCACCGACAAGCCCACCGCTTCAGCGGTGGGTCGCTGAC II struct. : Yes
Insertion site
Left flank | LE cleavage site | Right flank | RE cleavage site |
---|---|---|---|
GCGGGGCGCGAC | TCAC | GTCACTCTACTT | tgac |
DNA sequence
TCGAGGTACAGCGCGGAAGCCCACCCCTTTAGGAGTGGGAGGAAGCGCGTACACTCCGTGCGACAACCCACCGACGACGACAGGACCGACTCCCCAACGC
CGGCACAGAATGTATAAATAAAACATCCGTATGTGAATATGCGATGGAGGTCAAACGCACCGTTCCCGTCAAACTCGACGTACCCAAGGAGCGGCGCGAC
GACCTCCATCAGACCATCCAGCAGTTCAACACTGCCGCCAACTACACCATCGACCACGGCAGAGACGACGACGGCGACCTGATTCTCAACAAGTCCACCA
TCCACGACGAAGTGTACCACGACTTGCGGGACAGAACCGACCTGCCCGCAAACCTCGTGGTACGCGCCTACTCGAAAGCCGTCGAAGCGATGAAATCCAC
CGTCGCGGAGTGGGAGAACGGCAACAGCAGACCGCTCCCCTCGTTCGATGAACCGTCTGCCGTCTACGATAAACGCACCCTGACTATCAAGGACGAGTAC
GCCACGCTCTCGACGGTCAACGGGCGCGTCGAAGCCGACTTCGTGCTTGGTGAGTACCAGCGGTCGTACCTTGAAGACGACGACTACGAGAAACGGATGG
GGACACTTCATTACCGTCCCGGCGAGGATGCGTTCTACCTCCACGTCGTCATCCAAAAGCAGGTAGACCAGCGTGACGGCGACCGCGTGCTTGGCGTGGA
TTTGAACCTGAAGAACGTCGCTGTGACGAGTACGGGACGGTTCTTCGACGGCGGTGAACTGCTGTGGGGCCAGAATCACTATTTCCGCGTGAGACGGAGC
CTTCAGGACAAAGGCACCCGTTCCGCTCGGCAGGCGTTACGGCGACTGTCGGGACGGGAAAACCGCTTCGTCCTGAACCGCCTGCACAACATTTCGCGTG
GAATCGTGGAGGAAGCCCTGCGACACGGCTGTTCGTACATCGCCGTCGAAGACCTAACCCACATCCGCGAGCGAATGGATGCCCGCGACGACCAGCTGAA
ACGGCAGATGCACAACTGGGCGTTCCGCGAACTGCAAGAACAAATCGCGTACAAGGCCGCAGAGTACGGGATTCGCGTCGAGTCGGTCAACCCGGCGTTT
TCCTCGCAGACGTGCTCGAAGTGCGGCCACCAGTCCAGCACGAACCGCGACAGCGAGACGGGCTGGTTCGCGTGCAACGAGTGTGGGTACGAGGTGGACG
GCGACTACAACGCGGCGAAAAACGTCGGCCTCCGTCTGTTAGCTTTACCACCGGGCAAACGTCCCGATGGGTTGGGCAACGGTCAGCTTGCCCTGAAGTC
GGGGACGTTGAACGTGAGCGACGTGTCCAACGTCCACTCCAGCTTGGAGTTTGAACGGGAGTCCACCGACAAGCCCACCGCTTCAGCGGTGGGTCGCTGA
C
CGGCACAGAATGTATAAATAAAACATCCGTATGTGAATATGCGATGGAGGTCAAACGCACCGTTCCCGTCAAACTCGACGTACCCAAGGAGCGGCGCGAC
GACCTCCATCAGACCATCCAGCAGTTCAACACTGCCGCCAACTACACCATCGACCACGGCAGAGACGACGACGGCGACCTGATTCTCAACAAGTCCACCA
TCCACGACGAAGTGTACCACGACTTGCGGGACAGAACCGACCTGCCCGCAAACCTCGTGGTACGCGCCTACTCGAAAGCCGTCGAAGCGATGAAATCCAC
CGTCGCGGAGTGGGAGAACGGCAACAGCAGACCGCTCCCCTCGTTCGATGAACCGTCTGCCGTCTACGATAAACGCACCCTGACTATCAAGGACGAGTAC
GCCACGCTCTCGACGGTCAACGGGCGCGTCGAAGCCGACTTCGTGCTTGGTGAGTACCAGCGGTCGTACCTTGAAGACGACGACTACGAGAAACGGATGG
GGACACTTCATTACCGTCCCGGCGAGGATGCGTTCTACCTCCACGTCGTCATCCAAAAGCAGGTAGACCAGCGTGACGGCGACCGCGTGCTTGGCGTGGA
TTTGAACCTGAAGAACGTCGCTGTGACGAGTACGGGACGGTTCTTCGACGGCGGTGAACTGCTGTGGGGCCAGAATCACTATTTCCGCGTGAGACGGAGC
CTTCAGGACAAAGGCACCCGTTCCGCTCGGCAGGCGTTACGGCGACTGTCGGGACGGGAAAACCGCTTCGTCCTGAACCGCCTGCACAACATTTCGCGTG
GAATCGTGGAGGAAGCCCTGCGACACGGCTGTTCGTACATCGCCGTCGAAGACCTAACCCACATCCGCGAGCGAATGGATGCCCGCGACGACCAGCTGAA
ACGGCAGATGCACAACTGGGCGTTCCGCGAACTGCAAGAACAAATCGCGTACAAGGCCGCAGAGTACGGGATTCGCGTCGAGTCGGTCAACCCGGCGTTT
TCCTCGCAGACGTGCTCGAAGTGCGGCCACCAGTCCAGCACGAACCGCGACAGCGAGACGGGCTGGTTCGCGTGCAACGAGTGTGGGTACGAGGTGGACG
GCGACTACAACGCGGCGAAAAACGTCGGCCTCCGTCTGTTAGCTTTACCACCGGGCAAACGTCCCGATGGGTTGGGCAACGGTCAGCTTGCCCTGAAGTC
GGGGACGTTGAACGTGAGCGACGTGTCCAACGTCCACTCCAGCTTGGAGTTTGAACGGGAGTCCACCGACAAGCCCACCGCTTCAGCGGTGGGTCGCTGA
C
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1257 bp | 418 aa | 144 | 1400 | + | No |
AG : TnpB
ORF sequence :
MEVKRTVPVKLDVPKERRDDLHQTIQQFNTAANYTIDHGRDDDGDLILNKSTIHDEVYHDLRDRTDLPANLVVRAYSKAVEAMKSTVAEWENGNSRPLPS
FDEPSAVYDKRTLTIKDEYATLSTVNGRVEADFVLGEYQRSYLEDDDYEKRMGTLHYRPGEDAFYLHVVIQKQVDQRDGDRVLGVDLNLKNVAVTSTGRF
FDGGELLWGQNHYFRVRRSLQDKGTRSARQALRRLSGRENRFVLNRLHNISRGIVEEALRHGCSYIAVEDLTHIRERMDARDDQLKRQMHNWAFRELQEQ
IAYKAAEYGIRVESVNPAFSSQTCSKCGHQSSTNRDSETGWFACNECGYEVDGDYNAAKNVGLRLLALPPGKRPDGLGNGQLALKSGTLNVSDVSNVHSS
LEFERESTDKPTASAVGR
FDEPSAVYDKRTLTIKDEYATLSTVNGRVEADFVLGEYQRSYLEDDDYEKRMGTLHYRPGEDAFYLHVVIQKQVDQRDGDRVLGVDLNLKNVAVTSTGRF
FDGGELLWGQNHYFRVRRSLQDKGTRSARQALRRLSGRENRFVLNRLHNISRGIVEEALRHGCSYIAVEDLTHIRERMDARDDQLKRQMHNWAFRELQEQ
IAYKAAEYGIRVESVNPAFSSQTCSKCGHQSSTNRDSETGWFACNECGYEVDGDYNAAKNVGLRLLALPPGKRPDGLGNGQLALKSGTLNVSDVSNVHSS
LEFERESTDKPTASAVGR
Blast result :
Comments
ISHhu4 is 41% aa (ORFB) similar to ISHvo19.
References
1] F. Pfeiffer (2013) Direct submission
2] Jaakkola S.T., Pfeiffer F., Ravantti J.J., Guo Q., Liu Y., Chen X., Ma H., Yang C., Oksanen H.M., Bamford D.H. (2015) Environ Microbiol. doi: 10.1111/1462-2920.13130
2] Jaakkola S.T., Pfeiffer F., Ravantti J.J., Guo Q., Liu Y., Chen X., Ma H., Yang C., Oksanen H.M., Bamford D.H. (2015) Environ Microbiol. doi: 10.1111/1462-2920.13130