ISNamo17

  • Family IS200/IS605
  • Group IS605
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
HF582854 ND Natronomonas moolapensis
Natronomonas moolapensis 8.8.11
DNA section
IS Length : 1836 bp

Ends


Left end : AAAGTTACGAGCGCATACCCCCGTCTTTAGGCGGGGGTCAAGCGGACCATAGCCTACACACCCGCCGATGACGCCACGGCTGGATTTCCCACCGTTCTAT II struct. : No
Right end : AGAGACGCTTGGGACGTATGCGTCTTGAAACCATAGGGCCACGACCGGCCTGAAATCCCGTGGTGGGATTCCCGCGTCTTCAGGCGCGGGAGGAGGTCAA II struct. : No

Insertion site


Left flankLE cleavage siteRight flankRE cleavage site
GGATCAGTGATGATGACACCAACA

DNA sequence

AAAGTTACGAGCGCATACCCCCGTCTTTAGGCGGGGGTCAAGCGGACCATAGCCTACACACCCGCCGATGACGCCACGGCTGGATTTCCCACCGTTCTAT
CGGTAGTATTAAGCAGACAACGGGCCATAGTGTACAACACAGATGAAGACCACACGGCACGCGACCTACAACCTCAACTACCACATAGTGTGGTTGCCGA
AGTACCGACAGTCGGTACTCGTCAACGGGGTCGCCAGTCGTGTCAGGTCCATCCTCTATGAAATAGCCGACGACAAAGGCGTCGAAATACTCGACCTCAC
CGTACAGCCCGACCACGTTCACCTGTTCGTCAGTAGCCCACCCAAGAACGAACCGGCACTACTCGCCAATTGGTTCAAGGGCATCTCCTCGCGCAAGTAC
AACCACCGATACGCCGACCACGACGGCGAGAAAATCGGATGGGCGCGAGGATACTACGCAGGGACCGCCGGGCACGTTTCGAGTGAGACTGTCGAGAACT
ACATCCGGCAACACAAGGAGGGCGATTCGTGACCGAACTCACGAAGACGCTGGAACTCAAACTTGTGGACCCGAACGCCCACAAGCGGAGGAAACTTCGT
GAGACGCGAGAGGCGTACCAGAACGCCCTCCAAGACGCCTTCGACGCTGGGTGTACCACGCAGACCGAAGCGAACGACGTGGTGGTCAACTACGACCTGA
GCGGGTACGCGAAGAACGCGCTCAAGAAGTACGTCCCGCAACTCACGACGACGTACAACGCGGGCGAACTTCACGACGACCACCCCGTCCGCTTCACGAA
CGAAGGGCTACGGCTCGACCACAAGCCCGAGAACGCTATCGAGTGGTACGTCAAAATCCCGCACCACGAGGACTACCACCTCTGGATGCCCGCCCAACCG
AACCCTGAACAGCGCGAGTGGTTGGAAGCGTTAAACGCGGGAGACGCCACGATGGGCGAGAGTCGGCTGTTCGAGCGGGACGGAAAATGGTATCTCCACG
TCACCGCCACCCGCGACGTAGAGGAACGCTCCGAGGGGTCCGCCGAAGAACGGACGCCCATCGGAGTAGACATCGGGGAAGCGTCACTCGTCACGGTGTG
TCACCGCGACGACCACGGATCTCCGACCGCGCCCGAACTGTGGGCCGACGAAGGCAAGACCGTCCGTCGGCTCCGCAAGACCTACTTCACCGCCAAGCGC
CGACTCCAGACGCGCGGAAGTGACCGTATCGCAGAGTCCTTCGGGGACGATATATGGAACCAGATAGACGACGTGTTCCACCGTGTTACCCGCGAGGTCG
TGGAGTACGCTGAGTCCGTCGAGAATCCCGTTCTTGTTCTGGAAGACCTGACGCACATACGGGAGTCGATGGACTACGGTGACTTCATGAATCGGCGTCT
CCACGGATGGGGATTCGCCAAACTCCACGCGCAGATACGCTACAAGGCCGTCGAGAAGGGCATCCCCGTCGAGACGGTGAACCCGCGCAACACGTCGAAA
GAGTGCCACGCTTGCGGTGAAGTGGGGTATCGCTCGCGACAGGCGACGTTCAAGTGTACGAACGACGCTTGCTGGATGGGCGAGTACCAAGCGGACGTGA
ACGGCGCGATAAATATCGCAGACCGCTACCTCAGCGGTGAGAGCCATTCAAGAGAACACACGGATGGCGATGACTCGGCTGAGGATGGGGGGCGTTTGAC
CGCCCCACAAGACACCCAAGCCGATGCTACCAACCAAGAGACGCTTGGGACGTATGCGTCTTGAAACCATAGGGCCACGACCGGCCTGAAATCCCGTGGT
GGGATTCCCGCGTCTTCAGGCGCGGGAGGAGGTCAA
Protein section
ORF number : 2

 

ORF 1
LengthBeginEndStrandFusion ORF
390 bp129 aa143532+No
ORF function : Transposase
Chemistry : Y1

ORF sequence :

MKTTRHATYNLNYHIVWLPKYRQSVLVNGVASRVRSILYEIADDKGVEILDLTVQPDHVHLFVSSPPKNEPALLANWFKGISSRKYNHRYADHDGEKIGW
ARGYYAGTAGHVSSETVENYIRQHKEGDS

 

Blast result :
ORF 2
LengthBeginEndStrandFusion ORF
1236 bp411 aa5291764+No
ORF function : Accessory Gene
AG : TnpB

ORF sequence :

MTELTKTLELKLVDPNAHKRRKLRETREAYQNALQDAFDAGCTTQTEANDVVVNYDLSGYAKNALKKYVPQLTTTYNAGELHDDHPVRFTNEGLRLDHKP
ENAIEWYVKIPHHEDYHLWMPAQPNPEQREWLEALNAGDATMGESRLFERDGKWYLHVTATRDVEERSEGSAEERTPIGVDIGEASLVTVCHRDDHGSPT
APELWADEGKTVRRLRKTYFTAKRRLQTRGSDRIAESFGDDIWNQIDDVFHRVTREVVEYAESVENPVLVLEDLTHIRESMDYGDFMNRRLHGWGFAKLH
AQIRYKAVEKGIPVETVNPRNTSKECHACGEVGYRSRQATFKCTNDACWMGEYQADVNGAINIADRYLSGESHSREHTDGDDSAEDGGRLTAPQDTQADA
TNQETLGTYAS

 

Blast result :
Comments
ISNamo17 is 97% aa (ORFA : the transposase) and 96% (ORFB) similar to ISNpe10
References
1] Pfeiffer F. (2013) Direct submission.
2] Dyall-Smith, M.L., Pfeiffer, F., Oberwinkler, T., Klee, K., Rampp, M., Palm, P., Gross, K., Schuster, S.C., Oesterhelt, D. (2013) Genome Announc. 1: e0009513