ISNamo17
- Family IS200/IS605
- Group IS605
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
HF582854 | ND | Natronomonas moolapensis | Natronomonas moolapensis 8.8.11 |
DNA section
IS Length : 1836 bp
Ends
Left end : AAAGTTACGAGCGCATACCCCCGTCTTTAGGCGGGGGTCAAGCGGACCATAGCCTACACACCCGCCGATGACGCCACGGCTGGATTTCCCACCGTTCTAT II struct. : No
Right end : AGAGACGCTTGGGACGTATGCGTCTTGAAACCATAGGGCCACGACCGGCCTGAAATCCCGTGGTGGGATTCCCGCGTCTTCAGGCGCGGGAGGAGGTCAA II struct. : No
Insertion site
Left flank | LE cleavage site | Right flank | RE cleavage site |
---|---|---|---|
GGATCAGTGA | TGAT | GACACCAACA |
DNA sequence
AAAGTTACGAGCGCATACCCCCGTCTTTAGGCGGGGGTCAAGCGGACCATAGCCTACACACCCGCCGATGACGCCACGGCTGGATTTCCCACCGTTCTAT
CGGTAGTATTAAGCAGACAACGGGCCATAGTGTACAACACAGATGAAGACCACACGGCACGCGACCTACAACCTCAACTACCACATAGTGTGGTTGCCGA
AGTACCGACAGTCGGTACTCGTCAACGGGGTCGCCAGTCGTGTCAGGTCCATCCTCTATGAAATAGCCGACGACAAAGGCGTCGAAATACTCGACCTCAC
CGTACAGCCCGACCACGTTCACCTGTTCGTCAGTAGCCCACCCAAGAACGAACCGGCACTACTCGCCAATTGGTTCAAGGGCATCTCCTCGCGCAAGTAC
AACCACCGATACGCCGACCACGACGGCGAGAAAATCGGATGGGCGCGAGGATACTACGCAGGGACCGCCGGGCACGTTTCGAGTGAGACTGTCGAGAACT
ACATCCGGCAACACAAGGAGGGCGATTCGTGACCGAACTCACGAAGACGCTGGAACTCAAACTTGTGGACCCGAACGCCCACAAGCGGAGGAAACTTCGT
GAGACGCGAGAGGCGTACCAGAACGCCCTCCAAGACGCCTTCGACGCTGGGTGTACCACGCAGACCGAAGCGAACGACGTGGTGGTCAACTACGACCTGA
GCGGGTACGCGAAGAACGCGCTCAAGAAGTACGTCCCGCAACTCACGACGACGTACAACGCGGGCGAACTTCACGACGACCACCCCGTCCGCTTCACGAA
CGAAGGGCTACGGCTCGACCACAAGCCCGAGAACGCTATCGAGTGGTACGTCAAAATCCCGCACCACGAGGACTACCACCTCTGGATGCCCGCCCAACCG
AACCCTGAACAGCGCGAGTGGTTGGAAGCGTTAAACGCGGGAGACGCCACGATGGGCGAGAGTCGGCTGTTCGAGCGGGACGGAAAATGGTATCTCCACG
TCACCGCCACCCGCGACGTAGAGGAACGCTCCGAGGGGTCCGCCGAAGAACGGACGCCCATCGGAGTAGACATCGGGGAAGCGTCACTCGTCACGGTGTG
TCACCGCGACGACCACGGATCTCCGACCGCGCCCGAACTGTGGGCCGACGAAGGCAAGACCGTCCGTCGGCTCCGCAAGACCTACTTCACCGCCAAGCGC
CGACTCCAGACGCGCGGAAGTGACCGTATCGCAGAGTCCTTCGGGGACGATATATGGAACCAGATAGACGACGTGTTCCACCGTGTTACCCGCGAGGTCG
TGGAGTACGCTGAGTCCGTCGAGAATCCCGTTCTTGTTCTGGAAGACCTGACGCACATACGGGAGTCGATGGACTACGGTGACTTCATGAATCGGCGTCT
CCACGGATGGGGATTCGCCAAACTCCACGCGCAGATACGCTACAAGGCCGTCGAGAAGGGCATCCCCGTCGAGACGGTGAACCCGCGCAACACGTCGAAA
GAGTGCCACGCTTGCGGTGAAGTGGGGTATCGCTCGCGACAGGCGACGTTCAAGTGTACGAACGACGCTTGCTGGATGGGCGAGTACCAAGCGGACGTGA
ACGGCGCGATAAATATCGCAGACCGCTACCTCAGCGGTGAGAGCCATTCAAGAGAACACACGGATGGCGATGACTCGGCTGAGGATGGGGGGCGTTTGAC
CGCCCCACAAGACACCCAAGCCGATGCTACCAACCAAGAGACGCTTGGGACGTATGCGTCTTGAAACCATAGGGCCACGACCGGCCTGAAATCCCGTGGT
GGGATTCCCGCGTCTTCAGGCGCGGGAGGAGGTCAA
CGGTAGTATTAAGCAGACAACGGGCCATAGTGTACAACACAGATGAAGACCACACGGCACGCGACCTACAACCTCAACTACCACATAGTGTGGTTGCCGA
AGTACCGACAGTCGGTACTCGTCAACGGGGTCGCCAGTCGTGTCAGGTCCATCCTCTATGAAATAGCCGACGACAAAGGCGTCGAAATACTCGACCTCAC
CGTACAGCCCGACCACGTTCACCTGTTCGTCAGTAGCCCACCCAAGAACGAACCGGCACTACTCGCCAATTGGTTCAAGGGCATCTCCTCGCGCAAGTAC
AACCACCGATACGCCGACCACGACGGCGAGAAAATCGGATGGGCGCGAGGATACTACGCAGGGACCGCCGGGCACGTTTCGAGTGAGACTGTCGAGAACT
ACATCCGGCAACACAAGGAGGGCGATTCGTGACCGAACTCACGAAGACGCTGGAACTCAAACTTGTGGACCCGAACGCCCACAAGCGGAGGAAACTTCGT
GAGACGCGAGAGGCGTACCAGAACGCCCTCCAAGACGCCTTCGACGCTGGGTGTACCACGCAGACCGAAGCGAACGACGTGGTGGTCAACTACGACCTGA
GCGGGTACGCGAAGAACGCGCTCAAGAAGTACGTCCCGCAACTCACGACGACGTACAACGCGGGCGAACTTCACGACGACCACCCCGTCCGCTTCACGAA
CGAAGGGCTACGGCTCGACCACAAGCCCGAGAACGCTATCGAGTGGTACGTCAAAATCCCGCACCACGAGGACTACCACCTCTGGATGCCCGCCCAACCG
AACCCTGAACAGCGCGAGTGGTTGGAAGCGTTAAACGCGGGAGACGCCACGATGGGCGAGAGTCGGCTGTTCGAGCGGGACGGAAAATGGTATCTCCACG
TCACCGCCACCCGCGACGTAGAGGAACGCTCCGAGGGGTCCGCCGAAGAACGGACGCCCATCGGAGTAGACATCGGGGAAGCGTCACTCGTCACGGTGTG
TCACCGCGACGACCACGGATCTCCGACCGCGCCCGAACTGTGGGCCGACGAAGGCAAGACCGTCCGTCGGCTCCGCAAGACCTACTTCACCGCCAAGCGC
CGACTCCAGACGCGCGGAAGTGACCGTATCGCAGAGTCCTTCGGGGACGATATATGGAACCAGATAGACGACGTGTTCCACCGTGTTACCCGCGAGGTCG
TGGAGTACGCTGAGTCCGTCGAGAATCCCGTTCTTGTTCTGGAAGACCTGACGCACATACGGGAGTCGATGGACTACGGTGACTTCATGAATCGGCGTCT
CCACGGATGGGGATTCGCCAAACTCCACGCGCAGATACGCTACAAGGCCGTCGAGAAGGGCATCCCCGTCGAGACGGTGAACCCGCGCAACACGTCGAAA
GAGTGCCACGCTTGCGGTGAAGTGGGGTATCGCTCGCGACAGGCGACGTTCAAGTGTACGAACGACGCTTGCTGGATGGGCGAGTACCAAGCGGACGTGA
ACGGCGCGATAAATATCGCAGACCGCTACCTCAGCGGTGAGAGCCATTCAAGAGAACACACGGATGGCGATGACTCGGCTGAGGATGGGGGGCGTTTGAC
CGCCCCACAAGACACCCAAGCCGATGCTACCAACCAAGAGACGCTTGGGACGTATGCGTCTTGAAACCATAGGGCCACGACCGGCCTGAAATCCCGTGGT
GGGATTCCCGCGTCTTCAGGCGCGGGAGGAGGTCAA
Protein section
ORF number : 2
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
390 bp | 129 aa | 143 | 532 | + | No |
Chemistry : Y1
ORF sequence :
MKTTRHATYNLNYHIVWLPKYRQSVLVNGVASRVRSILYEIADDKGVEILDLTVQPDHVHLFVSSPPKNEPALLANWFKGISSRKYNHRYADHDGEKIGW
ARGYYAGTAGHVSSETVENYIRQHKEGDS
ARGYYAGTAGHVSSETVENYIRQHKEGDS
Blast result :ORF 2
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1236 bp | 411 aa | 529 | 1764 | + | No |
AG : TnpB
ORF sequence :
MTELTKTLELKLVDPNAHKRRKLRETREAYQNALQDAFDAGCTTQTEANDVVVNYDLSGYAKNALKKYVPQLTTTYNAGELHDDHPVRFTNEGLRLDHKP
ENAIEWYVKIPHHEDYHLWMPAQPNPEQREWLEALNAGDATMGESRLFERDGKWYLHVTATRDVEERSEGSAEERTPIGVDIGEASLVTVCHRDDHGSPT
APELWADEGKTVRRLRKTYFTAKRRLQTRGSDRIAESFGDDIWNQIDDVFHRVTREVVEYAESVENPVLVLEDLTHIRESMDYGDFMNRRLHGWGFAKLH
AQIRYKAVEKGIPVETVNPRNTSKECHACGEVGYRSRQATFKCTNDACWMGEYQADVNGAINIADRYLSGESHSREHTDGDDSAEDGGRLTAPQDTQADA
TNQETLGTYAS
ENAIEWYVKIPHHEDYHLWMPAQPNPEQREWLEALNAGDATMGESRLFERDGKWYLHVTATRDVEERSEGSAEERTPIGVDIGEASLVTVCHRDDHGSPT
APELWADEGKTVRRLRKTYFTAKRRLQTRGSDRIAESFGDDIWNQIDDVFHRVTREVVEYAESVENPVLVLEDLTHIRESMDYGDFMNRRLHGWGFAKLH
AQIRYKAVEKGIPVETVNPRNTSKECHACGEVGYRSRQATFKCTNDACWMGEYQADVNGAINIADRYLSGESHSREHTDGDDSAEDGGRLTAPQDTQADA
TNQETLGTYAS
Blast result :
Comments
ISNamo17 is 97% aa (ORFA : the transposase) and 96% (ORFB) similar to ISNpe10
References
1] Pfeiffer F. (2013) Direct submission.
2] Dyall-Smith, M.L., Pfeiffer, F., Oberwinkler, T., Klee, K., Rampp, M., Palm, P., Gross, K., Schuster, S.C., Oesterhelt, D. (2013) Genome Announc. 1: e0009513
2] Dyall-Smith, M.L., Pfeiffer, F., Oberwinkler, T., Klee, K., Rampp, M., Palm, P., Gross, K., Schuster, S.C., Oesterhelt, D. (2013) Genome Announc. 1: e0009513