ISHvo14
- Family ISNCY
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
CP001953 | ND | Haloferax volcanii | Haloferax volcanii DS2 plasmid pHV3 |
DNA section
IS Length : 2649 bp
Ends
IR Length : 0
IRL : CTATAGATCGTTTGTCTCAGTCGCTGTCCTCTCCTGTTCCACCGGCGTCC
IRR : GAAAATCGACAGAGCAGCCGCTACCGAACTCTCAAACCGGAATGAGAAAA
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
GCAGCGGAGCCG | ACTCGTTTTCTC | 0 |
DNA sequence
CTATAGATCGTTTGTCTCAGTCGCTGTCCTCTCCTGTTCCACCGGCGTCCTCGAGTTCTTCGATTGGCTTGAGATTCGCTTCCATACGTTCGTGTTTGGC
TTCACGAAGCTTCTCTTCTGACGCCATCTTCGGCACCAAAGACGCCCCCTCAGGCAGATCAATCTCTTGATCCTCTACGGGTTCCGAATCGGTGACCATC
TTGCGAATCTCCATATCTCGATTGAGCTTCCCAACCATCCGCTCGAACGCCGTCTCACGTTCGTGCTGAACCCGGCGAAGCTTCCGGACCTTCCGTTCGA
ATTCCGTTTGCGCTGCCCAATCGTAGATACGGCGTCCAAGAATCGTGAGCGCATACCGCTTCTCTGTCCCGTGTTCGGTTGGCTTATGGCTGACCGTGAG
CACTTCGCGCTCAACACCTTCTGAGAGTCGCGAGGAAACTGTCGAGCCACTTACTGCAACCGCGTCAACGAGCGCGTTGAATGTCGCTGTTCCCGTCCCA
ATCTCCGTAATGAGTTCTGCCGCTCCCTTCTTCCGAAGAAACCCCTCAAGTTCGTCCAAGCCCATCGTACCTCCTTCTTCTCGCACGTTACTATAAATCC
AACCGAAAATTGATTCATACTGATTCTTGACCCATACCGAATTATGGCCACAACTAATTCTCCAAGTATAGCGCGCATACCCCTTGATGTATCTCCCACA
ATAAGCTCAGAGCATACAATCATCGCAAAATGCTCTACACTATTTCCACTCTATTCTATACTGATCTCTGTTCTTGGATAGCGGATGTCTCTACACAGAA
TTACATCAGTATTTGGTCGAGCACACCTCAGAAGCAGATCAGTTCACCCCCGAGGTGGTTCAATGCTGACTGACCCGTCGGCTGTTGCTGACTCAATCAT
TGTCCACGCGGAGACGCTCTGTGAGCGTGAAGACCACCTCTGGGACGTGATTCGTCAGCTATCGATCCCCGTCGACAACCTCGAGGATGCTCGCGATCAG
AACCGCGTGACGTTTGGAACCGATGAGATGTTCCGCACGCTCCTGTTCAAAGGGATTCGGGGTATCTCACAGAACGAATTAGCCCAACGACTCGGGCGGG
AGCCGAGCTTGGTCAAGAGTTTCCACCTCGATACCACCGATCTCTCGAATACTCCGACCCAGCAACAGCTCTCGTATACGCACGCGCAGTTCAGTGAGAA
CACACAAGAGGTTCTGAACAGAACTGTCGCTGGCGTTCGACAGGCCGCGCTCAATCACGGCGTACTCACGGAAGGCCTTGTTCCAACCATTCCGACGGAA
CCTGAGAATTCGACTTCGAAGAGCGAGAGCGAGTACAAGAAGGAGAAAGCCCAGAAGACGCTGACGCTCGCTCGAAAACACGTCCTTCCCGAGTTCGATA
CGCACCGAGCGGCCCACAAGACGTACTCCGACGAGGTAATTCTGGATATGTTCGCGCGGATCTGTGCGAACAAGGGGAGTGCTCACTCGGAATCGGAGTA
CGGCTGGCTCACCGACGATGACCTCATCTGTGACGACTCGACGTTCCTGCGGGCGATGAAGAAGATTGCTACTCCAGAGGACTCGGATAGTCAGCTCACG
TTCGAGGATTTCGAGGACGACGACTCAATGCCGGAAACCGACCGGATTCGAGACGCCATTATGACAGCGTTCGACGCCGCGACGGACAACATCATCAACT
CGATTCGCGGTCAGAACCCCTTCGAGTCGCGTGAGACGATTGCAGCCATCGACATCACCCACGAGCAGTTCCACGTCTGGCCGTGGGAAGACAAGGAAGC
GGGTATCGCCAAGCCGGACTACCCGAAGATGGTGAGCGGGTACAAGAAAGACGGCGAGTACAAGCGTGGATACAAATACGCGACGATCACACTGGTCGGT
GACCACGCACCGATTGTTCTCGGTATCGAGCCGGTGAAAGAGAACTCCGCATGGGAACCCGACGACTCGCCATCGTACTCGAAAGCCGACCTCGTGAGTC
GGCTGTTGGACAGCGCCGAGCGGTTCGTCGATCTGGACACGGTGATGTTCGACCGAGGATTCTACGTGAATCGTGTGTACGCGGACGTCCACGATCGGGA
AATCACGTACCTCTCACCAGTTCCGAAGTATGAAGATGAGTTGACGGCGGTTCAGGATATTCAGGAGCATCCGACGGCAGACGCAGCTGTCAAGCACGAC
GTACCATTGGGAATCGATGGCGAGGTTCACCACGAAGCGGAGTTCCTCTACGCGCCGAGTACGAGCGACGATGCTGAGGGGAAGTACGCGGTGTTCGTGA
CGAATCAGGACCGCGTGGAACCTGAGAAGATTCGAAGTGTCGTGAACGGGTACAGTCGGCGCTGGGACATCGAGAACCAGTACAAGTCGATCAAGAGCTT
CATGCCGAAGACGTCGTCGACGGACTATCGGCTTCGATTCTGTAACTTTGCGCTGTCGACGTTGATCTACAACCTGTGGCGGCTCACGGACTATCTGATC
AAGGTCGCGCTCGACGAGCCGATTCGGTCGCCGCCTGTAATCACGGCGAAGACCTTCGTGCGAGCGTTAGGGGACTTCCTGCGTGAGTTCGGGTAACGCT
TTTCTCATTCCGGTTTGAGAGTTCGGTAGCGGCTGCTCTGTCGATTTTC
TTCACGAAGCTTCTCTTCTGACGCCATCTTCGGCACCAAAGACGCCCCCTCAGGCAGATCAATCTCTTGATCCTCTACGGGTTCCGAATCGGTGACCATC
TTGCGAATCTCCATATCTCGATTGAGCTTCCCAACCATCCGCTCGAACGCCGTCTCACGTTCGTGCTGAACCCGGCGAAGCTTCCGGACCTTCCGTTCGA
ATTCCGTTTGCGCTGCCCAATCGTAGATACGGCGTCCAAGAATCGTGAGCGCATACCGCTTCTCTGTCCCGTGTTCGGTTGGCTTATGGCTGACCGTGAG
CACTTCGCGCTCAACACCTTCTGAGAGTCGCGAGGAAACTGTCGAGCCACTTACTGCAACCGCGTCAACGAGCGCGTTGAATGTCGCTGTTCCCGTCCCA
ATCTCCGTAATGAGTTCTGCCGCTCCCTTCTTCCGAAGAAACCCCTCAAGTTCGTCCAAGCCCATCGTACCTCCTTCTTCTCGCACGTTACTATAAATCC
AACCGAAAATTGATTCATACTGATTCTTGACCCATACCGAATTATGGCCACAACTAATTCTCCAAGTATAGCGCGCATACCCCTTGATGTATCTCCCACA
ATAAGCTCAGAGCATACAATCATCGCAAAATGCTCTACACTATTTCCACTCTATTCTATACTGATCTCTGTTCTTGGATAGCGGATGTCTCTACACAGAA
TTACATCAGTATTTGGTCGAGCACACCTCAGAAGCAGATCAGTTCACCCCCGAGGTGGTTCAATGCTGACTGACCCGTCGGCTGTTGCTGACTCAATCAT
TGTCCACGCGGAGACGCTCTGTGAGCGTGAAGACCACCTCTGGGACGTGATTCGTCAGCTATCGATCCCCGTCGACAACCTCGAGGATGCTCGCGATCAG
AACCGCGTGACGTTTGGAACCGATGAGATGTTCCGCACGCTCCTGTTCAAAGGGATTCGGGGTATCTCACAGAACGAATTAGCCCAACGACTCGGGCGGG
AGCCGAGCTTGGTCAAGAGTTTCCACCTCGATACCACCGATCTCTCGAATACTCCGACCCAGCAACAGCTCTCGTATACGCACGCGCAGTTCAGTGAGAA
CACACAAGAGGTTCTGAACAGAACTGTCGCTGGCGTTCGACAGGCCGCGCTCAATCACGGCGTACTCACGGAAGGCCTTGTTCCAACCATTCCGACGGAA
CCTGAGAATTCGACTTCGAAGAGCGAGAGCGAGTACAAGAAGGAGAAAGCCCAGAAGACGCTGACGCTCGCTCGAAAACACGTCCTTCCCGAGTTCGATA
CGCACCGAGCGGCCCACAAGACGTACTCCGACGAGGTAATTCTGGATATGTTCGCGCGGATCTGTGCGAACAAGGGGAGTGCTCACTCGGAATCGGAGTA
CGGCTGGCTCACCGACGATGACCTCATCTGTGACGACTCGACGTTCCTGCGGGCGATGAAGAAGATTGCTACTCCAGAGGACTCGGATAGTCAGCTCACG
TTCGAGGATTTCGAGGACGACGACTCAATGCCGGAAACCGACCGGATTCGAGACGCCATTATGACAGCGTTCGACGCCGCGACGGACAACATCATCAACT
CGATTCGCGGTCAGAACCCCTTCGAGTCGCGTGAGACGATTGCAGCCATCGACATCACCCACGAGCAGTTCCACGTCTGGCCGTGGGAAGACAAGGAAGC
GGGTATCGCCAAGCCGGACTACCCGAAGATGGTGAGCGGGTACAAGAAAGACGGCGAGTACAAGCGTGGATACAAATACGCGACGATCACACTGGTCGGT
GACCACGCACCGATTGTTCTCGGTATCGAGCCGGTGAAAGAGAACTCCGCATGGGAACCCGACGACTCGCCATCGTACTCGAAAGCCGACCTCGTGAGTC
GGCTGTTGGACAGCGCCGAGCGGTTCGTCGATCTGGACACGGTGATGTTCGACCGAGGATTCTACGTGAATCGTGTGTACGCGGACGTCCACGATCGGGA
AATCACGTACCTCTCACCAGTTCCGAAGTATGAAGATGAGTTGACGGCGGTTCAGGATATTCAGGAGCATCCGACGGCAGACGCAGCTGTCAAGCACGAC
GTACCATTGGGAATCGATGGCGAGGTTCACCACGAAGCGGAGTTCCTCTACGCGCCGAGTACGAGCGACGATGCTGAGGGGAAGTACGCGGTGTTCGTGA
CGAATCAGGACCGCGTGGAACCTGAGAAGATTCGAAGTGTCGTGAACGGGTACAGTCGGCGCTGGGACATCGAGAACCAGTACAAGTCGATCAAGAGCTT
CATGCCGAAGACGTCGTCGACGGACTATCGGCTTCGATTCTGTAACTTTGCGCTGTCGACGTTGATCTACAACCTGTGGCGGCTCACGGACTATCTGATC
AAGGTCGCGCTCGACGAGCCGATTCGGTCGCCGCCTGTAATCACGGCGAAGACCTTCGTGCGAGCGTTAGGGGACTTCCTGCGTGAGTTCGGGTAACGCT
TTTCTCATTCCGGTTTGAGAGTTCGGTAGCGGCTGCTCTGTCGATTTTC
Protein section
ORF number : 2
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
549 bp | 182 aa | 565 | 17 | - | No |
Annotation : Hypothetical proteinDescription :
ORF sequence :
MGLDELEGFLRKKGAAELITEIGTGTATFNALVDAVAVSGSTVSSRLSEGVEREVLTVSHKPTEHGTEKRYALTILGRRIYDWAAQTEFERKVRKLRRVQ
HERETAFERMVGKLNRDMEIRKMVTDSEPVEDQEIDLPEGASLVPKMASEEKLREAKHERMEANLKPIEELEDAGGTGEDSD
HERETAFERMVGKLNRDMEIRKMVTDSEPVEDQEIDLPEGASLVPKMASEEKLREAKHERMEANLKPIEELEDAGGTGEDSD
Blast result :ORF 2
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1734 bp | 577 aa | 863 | 2596 | + | No |
Chemistry : Unknow
ORF sequence :
MLTDPSAVADSIIVHAETLCEREDHLWDVIRQLSIPVDNLEDARDQNRVTFGTDEMFRTLLFKGIRGISQNELAQRLGREPSLVKSFHLDTTDLSNTPTQ
QQLSYTHAQFSENTQEVLNRTVAGVRQAALNHGVLTEGLVPTIPTEPENSTSKSESEYKKEKAQKTLTLARKHVLPEFDTHRAAHKTYSDEVILDMFARI
CANKGSAHSESEYGWLTDDDLICDDSTFLRAMKKIATPEDSDSQLTFEDFEDDDSMPETDRIRDAIMTAFDAATDNIINSIRGQNPFESRETIAAIDITH
EQFHVWPWEDKEAGIAKPDYPKMVSGYKKDGEYKRGYKYATITLVGDHAPIVLGIEPVKENSAWEPDDSPSYSKADLVSRLLDSAERFVDLDTVMFDRGF
YVNRVYADVHDREITYLSPVPKYEDELTAVQDIQEHPTADAAVKHDVPLGIDGEVHHEAEFLYAPSTSDDAEGKYAVFVTNQDRVEPEKIRSVVNGYSRR
WDIENQYKSIKSFMPKTSSTDYRLRFCNFALSTLIYNLWRLTDYLIKVALDEPIRSPPVITAKTFVRALGDFLREFG
QQLSYTHAQFSENTQEVLNRTVAGVRQAALNHGVLTEGLVPTIPTEPENSTSKSESEYKKEKAQKTLTLARKHVLPEFDTHRAAHKTYSDEVILDMFARI
CANKGSAHSESEYGWLTDDDLICDDSTFLRAMKKIATPEDSDSQLTFEDFEDDDSMPETDRIRDAIMTAFDAATDNIINSIRGQNPFESRETIAAIDITH
EQFHVWPWEDKEAGIAKPDYPKMVSGYKKDGEYKRGYKYATITLVGDHAPIVLGIEPVKENSAWEPDDSPSYSKADLVSRLLDSAERFVDLDTVMFDRGF
YVNRVYADVHDREITYLSPVPKYEDELTAVQDIQEHPTADAAVKHDVPLGIDGEVHHEAEFLYAPSTSDDAEGKYAVFVTNQDRVEPEKIRSVVNGYSRR
WDIENQYKSIKSFMPKTSSTDYRLRFCNFALSTLIYNLWRLTDYLIKVALDEPIRSPPVITAKTFVRALGDFLREFG
Blast result :
Comments
ISHvo14 is 46% aa similar to ISHwa15 (ORF2 : the transposase). The first ORF is a passenger gene, annotated as hypothetical protein. The termini are not certain, the element may be 9 bp too long at each end. The termini are supported by highly similar elements from Halalkalicoccus jeotgali and Natronobacterium gregoryi.
References
1] Pfeiffer F. (2013) Direct submission.
2] Hartman, A.L., Norais, C., Badger, J.H., Delmas, S., Haldenby, S., Madupu, R., Robinson, J., Khouri, H., Ren, Q., Lowe, T.M., Maupin-Furlow, J., Pohlschroder, M., Daniels, C., Pfeiffer, F., Allers, T., Eisen, J.A. (2010) PLoS ONE 5, E9605-E9605
2] Hartman, A.L., Norais, C., Badger, J.H., Delmas, S., Haldenby, S., Madupu, R., Robinson, J., Khouri, H., Ren, Q., Lowe, T.M., Maupin-Furlow, J., Pohlschroder, M., Daniels, C., Pfeiffer, F., Allers, T., Eisen, J.A. (2010) PLoS ONE 5, E9605-E9605