ISHvo14

  • Family ISNCY
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
CP001953 ND Haloferax volcanii
Haloferax volcanii DS2 plasmid pHV3
DNA section
IS Length : 2649 bp

Ends


IR Length : 0

IRL : CTATAGATCGTTTGTCTCAGTCGCTGTCCTCTCCTGTTCCACCGGCGTCC
IRR : GAAAATCGACAGAGCAGCCGCTACCGAACTCTCAAACCGGAATGAGAAAA

Insertion site


Left flankDirect repeatRight flankDR Length
GCAGCGGAGCCGACTCGTTTTCTC0

DNA sequence

CTATAGATCGTTTGTCTCAGTCGCTGTCCTCTCCTGTTCCACCGGCGTCCTCGAGTTCTTCGATTGGCTTGAGATTCGCTTCCATACGTTCGTGTTTGGC
TTCACGAAGCTTCTCTTCTGACGCCATCTTCGGCACCAAAGACGCCCCCTCAGGCAGATCAATCTCTTGATCCTCTACGGGTTCCGAATCGGTGACCATC
TTGCGAATCTCCATATCTCGATTGAGCTTCCCAACCATCCGCTCGAACGCCGTCTCACGTTCGTGCTGAACCCGGCGAAGCTTCCGGACCTTCCGTTCGA
ATTCCGTTTGCGCTGCCCAATCGTAGATACGGCGTCCAAGAATCGTGAGCGCATACCGCTTCTCTGTCCCGTGTTCGGTTGGCTTATGGCTGACCGTGAG
CACTTCGCGCTCAACACCTTCTGAGAGTCGCGAGGAAACTGTCGAGCCACTTACTGCAACCGCGTCAACGAGCGCGTTGAATGTCGCTGTTCCCGTCCCA
ATCTCCGTAATGAGTTCTGCCGCTCCCTTCTTCCGAAGAAACCCCTCAAGTTCGTCCAAGCCCATCGTACCTCCTTCTTCTCGCACGTTACTATAAATCC
AACCGAAAATTGATTCATACTGATTCTTGACCCATACCGAATTATGGCCACAACTAATTCTCCAAGTATAGCGCGCATACCCCTTGATGTATCTCCCACA
ATAAGCTCAGAGCATACAATCATCGCAAAATGCTCTACACTATTTCCACTCTATTCTATACTGATCTCTGTTCTTGGATAGCGGATGTCTCTACACAGAA
TTACATCAGTATTTGGTCGAGCACACCTCAGAAGCAGATCAGTTCACCCCCGAGGTGGTTCAATGCTGACTGACCCGTCGGCTGTTGCTGACTCAATCAT
TGTCCACGCGGAGACGCTCTGTGAGCGTGAAGACCACCTCTGGGACGTGATTCGTCAGCTATCGATCCCCGTCGACAACCTCGAGGATGCTCGCGATCAG
AACCGCGTGACGTTTGGAACCGATGAGATGTTCCGCACGCTCCTGTTCAAAGGGATTCGGGGTATCTCACAGAACGAATTAGCCCAACGACTCGGGCGGG
AGCCGAGCTTGGTCAAGAGTTTCCACCTCGATACCACCGATCTCTCGAATACTCCGACCCAGCAACAGCTCTCGTATACGCACGCGCAGTTCAGTGAGAA
CACACAAGAGGTTCTGAACAGAACTGTCGCTGGCGTTCGACAGGCCGCGCTCAATCACGGCGTACTCACGGAAGGCCTTGTTCCAACCATTCCGACGGAA
CCTGAGAATTCGACTTCGAAGAGCGAGAGCGAGTACAAGAAGGAGAAAGCCCAGAAGACGCTGACGCTCGCTCGAAAACACGTCCTTCCCGAGTTCGATA
CGCACCGAGCGGCCCACAAGACGTACTCCGACGAGGTAATTCTGGATATGTTCGCGCGGATCTGTGCGAACAAGGGGAGTGCTCACTCGGAATCGGAGTA
CGGCTGGCTCACCGACGATGACCTCATCTGTGACGACTCGACGTTCCTGCGGGCGATGAAGAAGATTGCTACTCCAGAGGACTCGGATAGTCAGCTCACG
TTCGAGGATTTCGAGGACGACGACTCAATGCCGGAAACCGACCGGATTCGAGACGCCATTATGACAGCGTTCGACGCCGCGACGGACAACATCATCAACT
CGATTCGCGGTCAGAACCCCTTCGAGTCGCGTGAGACGATTGCAGCCATCGACATCACCCACGAGCAGTTCCACGTCTGGCCGTGGGAAGACAAGGAAGC
GGGTATCGCCAAGCCGGACTACCCGAAGATGGTGAGCGGGTACAAGAAAGACGGCGAGTACAAGCGTGGATACAAATACGCGACGATCACACTGGTCGGT
GACCACGCACCGATTGTTCTCGGTATCGAGCCGGTGAAAGAGAACTCCGCATGGGAACCCGACGACTCGCCATCGTACTCGAAAGCCGACCTCGTGAGTC
GGCTGTTGGACAGCGCCGAGCGGTTCGTCGATCTGGACACGGTGATGTTCGACCGAGGATTCTACGTGAATCGTGTGTACGCGGACGTCCACGATCGGGA
AATCACGTACCTCTCACCAGTTCCGAAGTATGAAGATGAGTTGACGGCGGTTCAGGATATTCAGGAGCATCCGACGGCAGACGCAGCTGTCAAGCACGAC
GTACCATTGGGAATCGATGGCGAGGTTCACCACGAAGCGGAGTTCCTCTACGCGCCGAGTACGAGCGACGATGCTGAGGGGAAGTACGCGGTGTTCGTGA
CGAATCAGGACCGCGTGGAACCTGAGAAGATTCGAAGTGTCGTGAACGGGTACAGTCGGCGCTGGGACATCGAGAACCAGTACAAGTCGATCAAGAGCTT
CATGCCGAAGACGTCGTCGACGGACTATCGGCTTCGATTCTGTAACTTTGCGCTGTCGACGTTGATCTACAACCTGTGGCGGCTCACGGACTATCTGATC
AAGGTCGCGCTCGACGAGCCGATTCGGTCGCCGCCTGTAATCACGGCGAAGACCTTCGTGCGAGCGTTAGGGGACTTCCTGCGTGAGTTCGGGTAACGCT
TTTCTCATTCCGGTTTGAGAGTTCGGTAGCGGCTGCTCTGTCGATTTTC
Protein section
ORF number : 2

 

ORF 1
LengthBeginEndStrandFusion ORF
549 bp182 aa56517-No
ORF function : Passenger Gene
Annotation : Hypothetical proteinDescription :

ORF sequence :

MGLDELEGFLRKKGAAELITEIGTGTATFNALVDAVAVSGSTVSSRLSEGVEREVLTVSHKPTEHGTEKRYALTILGRRIYDWAAQTEFERKVRKLRRVQ
HERETAFERMVGKLNRDMEIRKMVTDSEPVEDQEIDLPEGASLVPKMASEEKLREAKHERMEANLKPIEELEDAGGTGEDSD

 

Blast result :
ORF 2
LengthBeginEndStrandFusion ORF
1734 bp577 aa8632596+No
ORF function : Transposase
Chemistry : Unknow

ORF sequence :

MLTDPSAVADSIIVHAETLCEREDHLWDVIRQLSIPVDNLEDARDQNRVTFGTDEMFRTLLFKGIRGISQNELAQRLGREPSLVKSFHLDTTDLSNTPTQ
QQLSYTHAQFSENTQEVLNRTVAGVRQAALNHGVLTEGLVPTIPTEPENSTSKSESEYKKEKAQKTLTLARKHVLPEFDTHRAAHKTYSDEVILDMFARI
CANKGSAHSESEYGWLTDDDLICDDSTFLRAMKKIATPEDSDSQLTFEDFEDDDSMPETDRIRDAIMTAFDAATDNIINSIRGQNPFESRETIAAIDITH
EQFHVWPWEDKEAGIAKPDYPKMVSGYKKDGEYKRGYKYATITLVGDHAPIVLGIEPVKENSAWEPDDSPSYSKADLVSRLLDSAERFVDLDTVMFDRGF
YVNRVYADVHDREITYLSPVPKYEDELTAVQDIQEHPTADAAVKHDVPLGIDGEVHHEAEFLYAPSTSDDAEGKYAVFVTNQDRVEPEKIRSVVNGYSRR
WDIENQYKSIKSFMPKTSSTDYRLRFCNFALSTLIYNLWRLTDYLIKVALDEPIRSPPVITAKTFVRALGDFLREFG

 

Blast result :
Comments
ISHvo14 is 46% aa similar to ISHwa15 (ORF2 : the transposase). The first ORF is a passenger gene, annotated as hypothetical protein. The termini are not certain, the element may be 9 bp too long at each end. The termini are supported by highly similar elements from Halalkalicoccus jeotgali and Natronobacterium gregoryi.
References
1] Pfeiffer F. (2013) Direct submission.
2] Hartman, A.L., Norais, C., Badger, J.H., Delmas, S., Haldenby, S., Madupu, R., Robinson, J., Khouri, H., Ren, Q., Lowe, T.M., Maupin-Furlow, J., Pohlschroder, M., Daniels, C., Pfeiffer, F., Allers, T., Eisen, J.A. (2010) PLoS ONE 5, E9605-E9605