ISEfm2

  • Family IS256
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
AY887085 ND Enterococcus faecium
Enterococcus faecium A119
Enterococcus faecium E59
DNA section
IS Length : 1325 bp

Ends


IR Length : 22/27

IRL : GAGAGTGTAAAATATTTTGTGTAAATAGAAAAAAGGAAGTCCCTTCTGTA
IRR : GGGAGCGTCAATAATTTTGTGTAAATAACTCGTCCTTCTGCAAAATAATG

Insertion site


Left flankDirect repeatRight flankDR Length
TAACAATTCAAAACTATTGGAACCACTG8

DNA sequence

GAGAGTGTAAAATATTTTGTGTAAATAGAAAAAAGGAAGTCCCTTCTGTAGAATAGAGTTACCACAACACATTCACAGAAAAGAGGACTTCCATATGAAC
GATTTTACTACAGAAATTCTAAAGACTCTAGCGAACAAAGGCGATTTGAATGAATTATTCCGTGTCCATTTGGAAAAAGCTGTCAATACGCTTCTCAAAA
CGGAGTTAACGGCTTTCCTCGATTACGAAAAGTACGATCGCATTGGTTTTAACACGGGTAATTCTCGTAACGGCTCCTATGACCGTACGGTCAAGACCGA
GTACGGGGAACTTCATCTCCAGATTCCGCGCGACCGCAACGGCGAGTTCAAGCAACAGACTGTTCCTGCTTATAGACGGACGAATGATACCTTAGAGGAG
ACCGTCATTCACCTCTTCCGAAAAGGTATTACCATGTCGGAAATCGCAGACTTGATTGAGAAAATGTATGGGCATCACTACACGCCCCAAACCATGTCCA
ACATGACTAAAGTGCTGACTGAAGAAGTAAATGCATTTAAAGTTAGAACTCTAAATGATAAGTATGTCGCTATTTTCATGGATGCTACTTATATTCCTTT
AAAACGGCAAACCGTCTCCAAAGAAGCAATCTATATTGCCATTGGTATACGAGAAGACGGCACTAAAGAAGTACTAAGTTATGCGATTGCCCCGACTGAA
TCGACCTACGTTTGGAATGAGTTGTTACAGGACATTTACTCCAGAGGGGTTCATGATGTCTTACTGTTTATTACCGATGGCTTAAAAGGCATGAAAGATA
CGATTCACCAGATTTATCCTAAAGCTAAATACCAACATTGCTGTGTTCACGTTTCCCGTAATATTGCTCATAAAGTACGTGTCAAAGATCGAAAAGAAAT
CTGTGATGATTTTAAGGCTGTTTATCAAGCTAGCTCAAAGGAAGAGGCAAATACCTTTTTAGGGAGTATGATTGAGAAGTGGCAGAAAACTTATCCTAAA
GTGACGCAGTCACTGATAAAAAATCAAGATTTATTGACTTTTTATGAGTTTCCGCCTGGTATCCGCCGAAGCATTTACTCAACTAATTTAATCGAATCTT
TCAATAAACAAATCAAGAAATACAGCCGCAGAAAAGAGCAGTTTCAAAATGAAGAATCACTAGAGCGTTTCCTAGTATCCATCTTTGATACATACAATCA
AAAATTCTTAAATAGAAGCCATAAAGGCTTCCAACAAGTGACGGATACATTAGCTTCAATGTTTACTGAGTAACCCATTATTTTGCAGAAGGACGAGTTA
TTTACACAAAATTATTGACGCTCCC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1179 bp392 aa951273+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MNDFTTEILKTLANKGDLNELFRVHLEKAVNTLLKTELTAFLDYEKYDRIGFNTGNSRNGSYDRTVKTEYGELHLQIPRDRNGEFKQQTVPAYRRTNDTL
EETVIHLFRKGITMSEIADLIEKMYGHHYTPQTMSNMTKVLTEEVNAFKVRTLNDKYVAIFMDATYIPLKRQTVSKEAIYIAIGIREDGTKEVLSYAIAP
TESTYVWNELLQDIYSRGVHDVLLFITDGLKGMKDTIHQIYPKAKYQHCCVHVSRNIAHKVRVKDRKEICDDFKAVYQASSKEEANTFLGSMIEKWQKTY
PKVTQSLIKNQDLLTFYEFPPGIRRSIYSTNLIESFNKQIKKYSRRKEQFQNEESLERFLVSIFDTYNQKFLNRSHKGFQQVTDTLASMFTE

 

Blast result :
Comments
ISEfm2 is 95% aa similar to ISEf1.
References
1] Isfinder submission (2014)
2] Mohn,S.C., Sollid,J.U.E., Jureen,R., Steen,V.M. and Langeland,N. (2005) Direct submission GenBank.