ISEfm2
- Family IS256
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
AY887085 | ND | Enterococcus faecium | Enterococcus faecium A119 Enterococcus faecium E59 |
DNA section
IS Length : 1325 bp
Ends
IR Length : 22/27
IRL : GAGAGTGTAAAATATTTTGTGTAAATAGAAAAAAGGAAGTCCCTTCTGTA
IRR : GGGAGCGTCAATAATTTTGTGTAAATAACTCGTCCTTCTGCAAAATAATG
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
TAACAATTCA | AAACTATT | GGAACCACTG | 8 |
DNA sequence
GAGAGTGTAAAATATTTTGTGTAAATAGAAAAAAGGAAGTCCCTTCTGTAGAATAGAGTTACCACAACACATTCACAGAAAAGAGGACTTCCATATGAAC
GATTTTACTACAGAAATTCTAAAGACTCTAGCGAACAAAGGCGATTTGAATGAATTATTCCGTGTCCATTTGGAAAAAGCTGTCAATACGCTTCTCAAAA
CGGAGTTAACGGCTTTCCTCGATTACGAAAAGTACGATCGCATTGGTTTTAACACGGGTAATTCTCGTAACGGCTCCTATGACCGTACGGTCAAGACCGA
GTACGGGGAACTTCATCTCCAGATTCCGCGCGACCGCAACGGCGAGTTCAAGCAACAGACTGTTCCTGCTTATAGACGGACGAATGATACCTTAGAGGAG
ACCGTCATTCACCTCTTCCGAAAAGGTATTACCATGTCGGAAATCGCAGACTTGATTGAGAAAATGTATGGGCATCACTACACGCCCCAAACCATGTCCA
ACATGACTAAAGTGCTGACTGAAGAAGTAAATGCATTTAAAGTTAGAACTCTAAATGATAAGTATGTCGCTATTTTCATGGATGCTACTTATATTCCTTT
AAAACGGCAAACCGTCTCCAAAGAAGCAATCTATATTGCCATTGGTATACGAGAAGACGGCACTAAAGAAGTACTAAGTTATGCGATTGCCCCGACTGAA
TCGACCTACGTTTGGAATGAGTTGTTACAGGACATTTACTCCAGAGGGGTTCATGATGTCTTACTGTTTATTACCGATGGCTTAAAAGGCATGAAAGATA
CGATTCACCAGATTTATCCTAAAGCTAAATACCAACATTGCTGTGTTCACGTTTCCCGTAATATTGCTCATAAAGTACGTGTCAAAGATCGAAAAGAAAT
CTGTGATGATTTTAAGGCTGTTTATCAAGCTAGCTCAAAGGAAGAGGCAAATACCTTTTTAGGGAGTATGATTGAGAAGTGGCAGAAAACTTATCCTAAA
GTGACGCAGTCACTGATAAAAAATCAAGATTTATTGACTTTTTATGAGTTTCCGCCTGGTATCCGCCGAAGCATTTACTCAACTAATTTAATCGAATCTT
TCAATAAACAAATCAAGAAATACAGCCGCAGAAAAGAGCAGTTTCAAAATGAAGAATCACTAGAGCGTTTCCTAGTATCCATCTTTGATACATACAATCA
AAAATTCTTAAATAGAAGCCATAAAGGCTTCCAACAAGTGACGGATACATTAGCTTCAATGTTTACTGAGTAACCCATTATTTTGCAGAAGGACGAGTTA
TTTACACAAAATTATTGACGCTCCC
GATTTTACTACAGAAATTCTAAAGACTCTAGCGAACAAAGGCGATTTGAATGAATTATTCCGTGTCCATTTGGAAAAAGCTGTCAATACGCTTCTCAAAA
CGGAGTTAACGGCTTTCCTCGATTACGAAAAGTACGATCGCATTGGTTTTAACACGGGTAATTCTCGTAACGGCTCCTATGACCGTACGGTCAAGACCGA
GTACGGGGAACTTCATCTCCAGATTCCGCGCGACCGCAACGGCGAGTTCAAGCAACAGACTGTTCCTGCTTATAGACGGACGAATGATACCTTAGAGGAG
ACCGTCATTCACCTCTTCCGAAAAGGTATTACCATGTCGGAAATCGCAGACTTGATTGAGAAAATGTATGGGCATCACTACACGCCCCAAACCATGTCCA
ACATGACTAAAGTGCTGACTGAAGAAGTAAATGCATTTAAAGTTAGAACTCTAAATGATAAGTATGTCGCTATTTTCATGGATGCTACTTATATTCCTTT
AAAACGGCAAACCGTCTCCAAAGAAGCAATCTATATTGCCATTGGTATACGAGAAGACGGCACTAAAGAAGTACTAAGTTATGCGATTGCCCCGACTGAA
TCGACCTACGTTTGGAATGAGTTGTTACAGGACATTTACTCCAGAGGGGTTCATGATGTCTTACTGTTTATTACCGATGGCTTAAAAGGCATGAAAGATA
CGATTCACCAGATTTATCCTAAAGCTAAATACCAACATTGCTGTGTTCACGTTTCCCGTAATATTGCTCATAAAGTACGTGTCAAAGATCGAAAAGAAAT
CTGTGATGATTTTAAGGCTGTTTATCAAGCTAGCTCAAAGGAAGAGGCAAATACCTTTTTAGGGAGTATGATTGAGAAGTGGCAGAAAACTTATCCTAAA
GTGACGCAGTCACTGATAAAAAATCAAGATTTATTGACTTTTTATGAGTTTCCGCCTGGTATCCGCCGAAGCATTTACTCAACTAATTTAATCGAATCTT
TCAATAAACAAATCAAGAAATACAGCCGCAGAAAAGAGCAGTTTCAAAATGAAGAATCACTAGAGCGTTTCCTAGTATCCATCTTTGATACATACAATCA
AAAATTCTTAAATAGAAGCCATAAAGGCTTCCAACAAGTGACGGATACATTAGCTTCAATGTTTACTGAGTAACCCATTATTTTGCAGAAGGACGAGTTA
TTTACACAAAATTATTGACGCTCCC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1179 bp | 392 aa | 95 | 1273 | + | No |
Chemistry : DDE
ORF sequence :
MNDFTTEILKTLANKGDLNELFRVHLEKAVNTLLKTELTAFLDYEKYDRIGFNTGNSRNGSYDRTVKTEYGELHLQIPRDRNGEFKQQTVPAYRRTNDTL
EETVIHLFRKGITMSEIADLIEKMYGHHYTPQTMSNMTKVLTEEVNAFKVRTLNDKYVAIFMDATYIPLKRQTVSKEAIYIAIGIREDGTKEVLSYAIAP
TESTYVWNELLQDIYSRGVHDVLLFITDGLKGMKDTIHQIYPKAKYQHCCVHVSRNIAHKVRVKDRKEICDDFKAVYQASSKEEANTFLGSMIEKWQKTY
PKVTQSLIKNQDLLTFYEFPPGIRRSIYSTNLIESFNKQIKKYSRRKEQFQNEESLERFLVSIFDTYNQKFLNRSHKGFQQVTDTLASMFTE
EETVIHLFRKGITMSEIADLIEKMYGHHYTPQTMSNMTKVLTEEVNAFKVRTLNDKYVAIFMDATYIPLKRQTVSKEAIYIAIGIREDGTKEVLSYAIAP
TESTYVWNELLQDIYSRGVHDVLLFITDGLKGMKDTIHQIYPKAKYQHCCVHVSRNIAHKVRVKDRKEICDDFKAVYQASSKEEANTFLGSMIEKWQKTY
PKVTQSLIKNQDLLTFYEFPPGIRRSIYSTNLIESFNKQIKKYSRRKEQFQNEESLERFLVSIFDTYNQKFLNRSHKGFQQVTDTLASMFTE
Blast result :
Comments
ISEfm2 is 95% aa similar to ISEf1.
References
1] Isfinder submission (2014)
2] Mohn,S.C., Sollid,J.U.E., Jureen,R., Steen,V.M. and Langeland,N. (2005) Direct submission GenBank.
2] Mohn,S.C., Sollid,J.U.E., Jureen,R., Steen,V.M. and Langeland,N. (2005) Direct submission GenBank.