ISCca2
- Family IS6
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
CBQZ010000005 | ND | Candidatus Cardinium | Candidatus Cardinium hertigii BtQ-VLC Cardinium endosymbiont cBtQ1 of Bemisia tabaci, WGS project CBQZ00000000, contig |
DNA section
IS Length : 834 bp
Ends
IR Length : 12/13
IRL : GGTTCTGTCGCATGTGTGTAAAGAAAGCCTTAAATTTAGATTTTTAGTTT
IRR : GGATCTGTCGCATCTACATTGAATTTTTCCTAGTTCTCCGGTTTGTCTTA
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
TCCCCAGACT | CTAATTTG | TCTATTTCGG | 8 |
CAGTAAAAAC | CAACATGACT | 0 | |
CTTCTTGATC | GTAAATTGTA | 0 | |
GCCATTTATA | CTTAATACTG | 0 | |
TGCACCATAC | GTAAAAACAA | 0 | |
CTCTGTCGGG | AAAATCAGAA | 0 | |
TACTAAAATG | ATTAATATTG | 0 | |
CATTCTGACG | TAAAATAGAC | 0 |
DNA sequence
GGTTCTGTCGCATGTGTGTAAAGAAAGCCTTAAATTTAGATTTTTAGTTTAAAACTTTAGTTTAGATGTTTAGTATTACGCCTCGATTATTGCCATATTT
TAAAGGATTTTGTTCATCCCCGGAGTTAATTCTTTTATTTGTGTACATGAAATGTCGTTTTTCGTTAAGCTATAGAGATCTGGAAGAGATGATGCATATC
AGAGGCGCAAAGATTGATCATTCCACTTTACAAAGATGGGTTATTAAGTTTGTTCCCCTCATAGATCAAGAAGTAAGAAGACGAAAACGCCCAGTTAGTA
GTAGTTGGAGAATGGATGAAACTTACGTAAAGATGAATGGTAAGTGGATCTATTTATATAGAGCAGTAGATCGTTATGGAGATACAGTTGACTTTTTTCT
AAGTGAAAGTAGAGACAAGTCTGCAGCTCTTTATTTTTTTCGTAAGGCTATCAGCTGTAATAATATTCCTTCTAAAGTGGTAGTTGATAAAAGCGGTAGT
AATAAGGCTGCGCTTGATGCTTTAAATACAGAACTAGATCAAGATCATAAAATTCCAATATTTCAAAACAAATACCTGAATAATAGAGTCGAGCAAGACC
ACAGGTTTATCAAAAAACGGATAAAGACTATGCTAGGGTTTAAGAATTTCCATGCTGCTGCCATTACTATAAAAGGGATAGAAAATATTAGAATCATTCA
AAAAGGACAATTAATCGGAACTAAAAAACAGAATTCTACTTTTGAAAACTTTTCCAAGATTATGGCCGCATAATATCCAATTTTTAAGACAAACCGGAGA
ACTAGGAAAAATTCAATGTAGATGCGACAGATCC
TAAAGGATTTTGTTCATCCCCGGAGTTAATTCTTTTATTTGTGTACATGAAATGTCGTTTTTCGTTAAGCTATAGAGATCTGGAAGAGATGATGCATATC
AGAGGCGCAAAGATTGATCATTCCACTTTACAAAGATGGGTTATTAAGTTTGTTCCCCTCATAGATCAAGAAGTAAGAAGACGAAAACGCCCAGTTAGTA
GTAGTTGGAGAATGGATGAAACTTACGTAAAGATGAATGGTAAGTGGATCTATTTATATAGAGCAGTAGATCGTTATGGAGATACAGTTGACTTTTTTCT
AAGTGAAAGTAGAGACAAGTCTGCAGCTCTTTATTTTTTTCGTAAGGCTATCAGCTGTAATAATATTCCTTCTAAAGTGGTAGTTGATAAAAGCGGTAGT
AATAAGGCTGCGCTTGATGCTTTAAATACAGAACTAGATCAAGATCATAAAATTCCAATATTTCAAAACAAATACCTGAATAATAGAGTCGAGCAAGACC
ACAGGTTTATCAAAAAACGGATAAAGACTATGCTAGGGTTTAAGAATTTCCATGCTGCTGCCATTACTATAAAAGGGATAGAAAATATTAGAATCATTCA
AAAAGGACAATTAATCGGAACTAAAAAACAGAATTCTACTTTTGAAAACTTTTCCAAGATTATGGCCGCATAATATCCAATTTTTAAGACAAACCGGAGA
ACTAGGAAAAATTCAATGTAGATGCGACAGATCC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
708 bp | 235 aa | 66 | 773 | + | No |
Chemistry : DDE
ORF sequence :
MFSITPRLLPYFKGFCSSPELILLFVYMKCRFSLSYRDLEEMMHIRGAKIDHSTLQRWVIKFVPLIDQEVRRRKRPVSSSWRMDETYVKMNGKWIYLYRA
VDRYGDTVDFFLSESRDKSAALYFFRKAISCNNIPSKVVVDKSGSNKAALDALNTELDQDHKIPIFQNKYLNNRVEQDHRFIKKRIKTMLGFKNFHAAAI
TIKGIENIRIIQKGQLIGTKKQNSTFENFSKIMAA
VDRYGDTVDFFLSESRDKSAALYFFRKAISCNNIPSKVVVDKSGSNKAALDALNTELDQDHKIPIFQNKYLNNRVEQDHRFIKKRIKTMLGFKNFHAAAI
TIKGIENIRIIQKGQLIGTKKQNSTFENFSKIMAA
Blast result :
Comments
ISCca2 is 68% aa similar to ISPmar1.
References
1] Santos-Garcia D, Rollat-Farnier PA, Beitia F, Zchori-Fein E, Vavre F, Mouton L, Moya A, Latorre A, Silva FJ. (2014) Genome Biol Evol. Apr 10
2] Santos-Garcia D. (2012) Direct submission
2] Santos-Garcia D. (2012) Direct submission