ISCca2

  • Family IS6
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
CBQZ010000005 ND Candidatus Cardinium
Candidatus Cardinium hertigii BtQ-VLC
Cardinium endosymbiont cBtQ1 of Bemisia tabaci, WGS project CBQZ00000000, contig
DNA section
IS Length : 834 bp

Ends


IR Length : 12/13

IRL : GGTTCTGTCGCATGTGTGTAAAGAAAGCCTTAAATTTAGATTTTTAGTTT
IRR : GGATCTGTCGCATCTACATTGAATTTTTCCTAGTTCTCCGGTTTGTCTTA

Insertion site


Left flankDirect repeatRight flankDR Length
TCCCCAGACTCTAATTTGTCTATTTCGG8
CAGTAAAAACCAACATGACT0
CTTCTTGATCGTAAATTGTA0
GCCATTTATACTTAATACTG0
TGCACCATACGTAAAAACAA0
CTCTGTCGGGAAAATCAGAA0
TACTAAAATGATTAATATTG0
CATTCTGACGTAAAATAGAC0

DNA sequence

GGTTCTGTCGCATGTGTGTAAAGAAAGCCTTAAATTTAGATTTTTAGTTTAAAACTTTAGTTTAGATGTTTAGTATTACGCCTCGATTATTGCCATATTT
TAAAGGATTTTGTTCATCCCCGGAGTTAATTCTTTTATTTGTGTACATGAAATGTCGTTTTTCGTTAAGCTATAGAGATCTGGAAGAGATGATGCATATC
AGAGGCGCAAAGATTGATCATTCCACTTTACAAAGATGGGTTATTAAGTTTGTTCCCCTCATAGATCAAGAAGTAAGAAGACGAAAACGCCCAGTTAGTA
GTAGTTGGAGAATGGATGAAACTTACGTAAAGATGAATGGTAAGTGGATCTATTTATATAGAGCAGTAGATCGTTATGGAGATACAGTTGACTTTTTTCT
AAGTGAAAGTAGAGACAAGTCTGCAGCTCTTTATTTTTTTCGTAAGGCTATCAGCTGTAATAATATTCCTTCTAAAGTGGTAGTTGATAAAAGCGGTAGT
AATAAGGCTGCGCTTGATGCTTTAAATACAGAACTAGATCAAGATCATAAAATTCCAATATTTCAAAACAAATACCTGAATAATAGAGTCGAGCAAGACC
ACAGGTTTATCAAAAAACGGATAAAGACTATGCTAGGGTTTAAGAATTTCCATGCTGCTGCCATTACTATAAAAGGGATAGAAAATATTAGAATCATTCA
AAAAGGACAATTAATCGGAACTAAAAAACAGAATTCTACTTTTGAAAACTTTTCCAAGATTATGGCCGCATAATATCCAATTTTTAAGACAAACCGGAGA
ACTAGGAAAAATTCAATGTAGATGCGACAGATCC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
708 bp235 aa66773+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MFSITPRLLPYFKGFCSSPELILLFVYMKCRFSLSYRDLEEMMHIRGAKIDHSTLQRWVIKFVPLIDQEVRRRKRPVSSSWRMDETYVKMNGKWIYLYRA
VDRYGDTVDFFLSESRDKSAALYFFRKAISCNNIPSKVVVDKSGSNKAALDALNTELDQDHKIPIFQNKYLNNRVEQDHRFIKKRIKTMLGFKNFHAAAI
TIKGIENIRIIQKGQLIGTKKQNSTFENFSKIMAA

 

Blast result :
Comments
ISCca2 is 68% aa similar to ISPmar1.
References
1] Santos-Garcia D, Rollat-Farnier PA, Beitia F, Zchori-Fein E, Vavre F, Mouton L, Moya A, Latorre A, Silva FJ. (2014) Genome Biol Evol. Apr 10

2] Santos-Garcia D. (2012) Direct submission