ISSal1
- Family IS66
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
ND | Shewanella algae | Shewanella algae ACDC |
DNA section
IS Length : 2528 bp
Ends
IR Length : 16/23
IRL : GTAACCGTCCGCCGAACCCATCTCCCCGCTTCTTCCAGATAGCGGCATGG
IRR : GTAAGCGTCTAGCTAACTCACCTTGCGTATCTGTATCACAGGCTGCACGG
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
GGCGCTCGCG | GCTATTTT | TTTGTTAGCC | 8 |
DNA sequence
GTAACCGTCCGCCGAACCCATCTCCCCGCTTCTTCCAGATAGCGGCATGGTGTGCACCTATTTTTGGTGGACACCATTTCAAGCCACTTTCTGGAGGGTT
TCGTGTCTCGACAGCGCCGTACATTCCCCAAGGCTTTCAAGGCCCAGGTCATCGAAGAGTGCGCCCAGTCCGGTGCTTCCGTCGCCGGCGTGGCGCTCAG
CCACGGGCTCAATGCCAACCTGGTGCATAAATGGATTCGTAAGCAGCGCGAGCCGCTACCGGTCGTATCTGCACGCTTTATCCCGGTGCCGCTCGGCATC
CTGCCTTCAGAGCAGGCCAGCTCTGAAGAGCTGACGATACGAATCGAAATCCCCTACCACGCCGGCAGTCTGTCGGTGCACTGGCCGGTGCAGGACGGCG
AAGGCTGTACACGCTTGCTGCGCGGGCTGCTCGCATGATTCGCATCGATCGCATCTGGCTGGCCACCGAGCCGATGGACATGCGCGCCGGCACCGAAACC
GCATTGGCCCGTGTAGTGGCGGTATTCGGTGCGGCCAAGCCGCACTGTGCTTATCTGTTCGCCAACCGCCGCGCCAACCGCATGAAAGTGTTGGTGCATG
ACGGTGTAGGGATCTGGCTGGCCGCGCGGCGATTGAACCAAGGCAAGTTTCACTGGCCAGGCATCCACCGCGGCTTGGAAGTTGAACTCGACACCGAGCA
GCTTCAGGCTTTGGTGCTCGGTTTACCCTGGCAGCGGGTTGGTGCAGCCGGTGCGATCACAATGCTGTAGCGCCGGCCATTAGCCTATCGCTTTATCTGC
GCGGATCGCCTGCTCTGGCACAATCAGCGGCATGACTTCCTTGCCCAATCTCGACCAACTAACACCTGAGCAACTGCGCGCACTGGCCGCCCAGTTGCTC
ACGCAGGTCGATGCGATGGGCAAAAAGATCCACCGTGATCAAACCATCATCGAGCAGCTCACCCACGAAATCGCCTGGTTCAAGCGCCACAAGTTCGCCA
AGCGTAGCGAGCAACTAAGCCCTGAACAGGGCAGCCTGCTGGATGATTTGCTCGACACGGACATCGCCGCCATCGAGGCGGAACTGAAAACCCTCAATCC
TCCGGCGGCTCCGGCTGAACCCCGCCAACAGCCCAAGCGCGCGCCGCTGCCAGCCCAGTTTCCGCGTACTGTGATCCGTCACGAGCCGCAGAACACTCAA
TGCGCCTGCGGCTGCCCGCTGCAACGCATCGGCGAAGACATCAGCGAAAAGCTGGATTACACGCCTGGCGTGTTCACCGTCGAACAGCATGTGCGTGGCA
AGTGGGCCTGCCGCCAGTGCGAAACATTGATCCAGGCGCCGGTACCAGCCCATGTGATCGACAAGGGCATCCCGACTGCCGGCTTGCTGGCTCATGTCAT
GGTGGCCAAATACGCCGATCATCTGCCGCTGTACCGGCAAGAGAAGATCTTTGGCCGTGCGGGTCTGGCTATCGCGCGTTCGACATTGGCGCAGTGGGTC
GGACAAACCGGCGTACAGCTCCAACCATTGGTCGATGCCCTGCGCGAGGCGGTACTGGCGCAAGGCGTGATCCATGCCGACGAAACCCCCGTGCAAATGC
TGGCCCCTGGCGAGAAGAAAACCCACCGGGCTTACGTCTGGGCATACTGCACCACACCCTTCGCCGACCTGAAGGCCGTGGTCTATGACTTCAGCCCAAG
CCGTGCAGGTGAGCATGCGCGCAATTTTATGGGTCAGTGGAATGGCAAACTGGTCTGCGACGACTTCGCCGGCTACAAGGCCAGCTTCGAGCAGGGCATC
ACCGAAATTGGCTGCATGGCCCACGCCCGCCGCAAATTTTTCGATCTGCACTCAGCGAACAAAAGCCAGTTAGCCGAACAGGCGCTGCACTCCATTGCCG
GGCTGTATGAAATCGAGCGGCAAGCACGGCACATGAGCGATGAAGAACGCTGGCGAATACGCCAGGAAAAGTCTTCACCGATCCTCGATGCGCTGCATGA
CTGGATGCTGGCCCAGCGTGATCGGGTGCCCAATGGATCAGCCACGGCAAAAGCCCTGGATTACAGCCTAAAACGCTGGCTAGCGCTGACGCGCTATCTG
GAAGATGGAGCCGTGCCCATCGACAACAATCAGGTCGAGAACCAGATTCGGCCTTGGGCATTGGGGCGCTCGAACTGGCTGTTTGCCGGTTCACTACGCA
GCGGCAAACGGGCGGCTGCGATCATGAGCCTGATCCAGTCAGCACGCCTCAACGGTCACGATCCGTACGCCTACCTGAAGGACGTGCTCATGCGGCTACC
AACGCAGCGGGCAAGCGAAATCAGTCAACTGCTGCCGCATCAGTGGATACAGCCTGAAGCAGGCATGTAACCACAGCGGTGTATCACCCCAAACAGCCTA
CCCGTAATAGTCTCGCACTGATTTTTTGGGCGTTCACGATGTGATACACGGTAAGCGTTCAGCGTGTGATACAGCTACCCGTGCAGCCTGTGATACAGAT
ACGCAAGGTGAGTTAGCTAGACGCTTAC
TCGTGTCTCGACAGCGCCGTACATTCCCCAAGGCTTTCAAGGCCCAGGTCATCGAAGAGTGCGCCCAGTCCGGTGCTTCCGTCGCCGGCGTGGCGCTCAG
CCACGGGCTCAATGCCAACCTGGTGCATAAATGGATTCGTAAGCAGCGCGAGCCGCTACCGGTCGTATCTGCACGCTTTATCCCGGTGCCGCTCGGCATC
CTGCCTTCAGAGCAGGCCAGCTCTGAAGAGCTGACGATACGAATCGAAATCCCCTACCACGCCGGCAGTCTGTCGGTGCACTGGCCGGTGCAGGACGGCG
AAGGCTGTACACGCTTGCTGCGCGGGCTGCTCGCATGATTCGCATCGATCGCATCTGGCTGGCCACCGAGCCGATGGACATGCGCGCCGGCACCGAAACC
GCATTGGCCCGTGTAGTGGCGGTATTCGGTGCGGCCAAGCCGCACTGTGCTTATCTGTTCGCCAACCGCCGCGCCAACCGCATGAAAGTGTTGGTGCATG
ACGGTGTAGGGATCTGGCTGGCCGCGCGGCGATTGAACCAAGGCAAGTTTCACTGGCCAGGCATCCACCGCGGCTTGGAAGTTGAACTCGACACCGAGCA
GCTTCAGGCTTTGGTGCTCGGTTTACCCTGGCAGCGGGTTGGTGCAGCCGGTGCGATCACAATGCTGTAGCGCCGGCCATTAGCCTATCGCTTTATCTGC
GCGGATCGCCTGCTCTGGCACAATCAGCGGCATGACTTCCTTGCCCAATCTCGACCAACTAACACCTGAGCAACTGCGCGCACTGGCCGCCCAGTTGCTC
ACGCAGGTCGATGCGATGGGCAAAAAGATCCACCGTGATCAAACCATCATCGAGCAGCTCACCCACGAAATCGCCTGGTTCAAGCGCCACAAGTTCGCCA
AGCGTAGCGAGCAACTAAGCCCTGAACAGGGCAGCCTGCTGGATGATTTGCTCGACACGGACATCGCCGCCATCGAGGCGGAACTGAAAACCCTCAATCC
TCCGGCGGCTCCGGCTGAACCCCGCCAACAGCCCAAGCGCGCGCCGCTGCCAGCCCAGTTTCCGCGTACTGTGATCCGTCACGAGCCGCAGAACACTCAA
TGCGCCTGCGGCTGCCCGCTGCAACGCATCGGCGAAGACATCAGCGAAAAGCTGGATTACACGCCTGGCGTGTTCACCGTCGAACAGCATGTGCGTGGCA
AGTGGGCCTGCCGCCAGTGCGAAACATTGATCCAGGCGCCGGTACCAGCCCATGTGATCGACAAGGGCATCCCGACTGCCGGCTTGCTGGCTCATGTCAT
GGTGGCCAAATACGCCGATCATCTGCCGCTGTACCGGCAAGAGAAGATCTTTGGCCGTGCGGGTCTGGCTATCGCGCGTTCGACATTGGCGCAGTGGGTC
GGACAAACCGGCGTACAGCTCCAACCATTGGTCGATGCCCTGCGCGAGGCGGTACTGGCGCAAGGCGTGATCCATGCCGACGAAACCCCCGTGCAAATGC
TGGCCCCTGGCGAGAAGAAAACCCACCGGGCTTACGTCTGGGCATACTGCACCACACCCTTCGCCGACCTGAAGGCCGTGGTCTATGACTTCAGCCCAAG
CCGTGCAGGTGAGCATGCGCGCAATTTTATGGGTCAGTGGAATGGCAAACTGGTCTGCGACGACTTCGCCGGCTACAAGGCCAGCTTCGAGCAGGGCATC
ACCGAAATTGGCTGCATGGCCCACGCCCGCCGCAAATTTTTCGATCTGCACTCAGCGAACAAAAGCCAGTTAGCCGAACAGGCGCTGCACTCCATTGCCG
GGCTGTATGAAATCGAGCGGCAAGCACGGCACATGAGCGATGAAGAACGCTGGCGAATACGCCAGGAAAAGTCTTCACCGATCCTCGATGCGCTGCATGA
CTGGATGCTGGCCCAGCGTGATCGGGTGCCCAATGGATCAGCCACGGCAAAAGCCCTGGATTACAGCCTAAAACGCTGGCTAGCGCTGACGCGCTATCTG
GAAGATGGAGCCGTGCCCATCGACAACAATCAGGTCGAGAACCAGATTCGGCCTTGGGCATTGGGGCGCTCGAACTGGCTGTTTGCCGGTTCACTACGCA
GCGGCAAACGGGCGGCTGCGATCATGAGCCTGATCCAGTCAGCACGCCTCAACGGTCACGATCCGTACGCCTACCTGAAGGACGTGCTCATGCGGCTACC
AACGCAGCGGGCAAGCGAAATCAGTCAACTGCTGCCGCATCAGTGGATACAGCCTGAAGCAGGCATGTAACCACAGCGGTGTATCACCCCAAACAGCCTA
CCCGTAATAGTCTCGCACTGATTTTTTGGGCGTTCACGATGTGATACACGGTAAGCGTTCAGCGTGTGATACAGCTACCCGTGCAGCCTGTGATACAGAT
ACGCAAGGTGAGTTAGCTAGACGCTTAC
Protein section
ORF number : 3
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
387 bp | 128 aa | 52 | 438 | + | No |
AG : IS66 TnpA
ORF sequence :
VHLFLVDTISSHFLEGFVSRQRRTFPKAFKAQVIEECAQSGASVAGVALSHGLNANLVHKWIRKQREPLPVVSARFIPVPLGILPSEQASSEELTIRIEI
PYHAGSLSVHWPVQDGEGCTRLLRGLLA
PYHAGSLSVHWPVQDGEGCTRLLRGLLA
Blast result :ORF 2
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
336 bp | 111 aa | 435 | 770 | + | No |
AG : IS66 TnpB
ORF sequence :
MIRIDRIWLATEPMDMRAGTETALARVVAVFGAAKPHCAYLFANRRANRMKVLVHDGVGIWLAARRLNQGKFHWPGIHRGLEVELDTEQLQALVLGLPWQ
RVGAAGAITML
RVGAAGAITML
Blast result :ORF 3
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1539 bp | 512 aa | 832 | 2370 | + | No |
Chemistry : DDE
ORF sequence :
MTSLPNLDQLTPEQLRALAAQLLTQVDAMGKKIHRDQTIIEQLTHEIAWFKRHKFAKRSEQLSPEQGSLLDDLLDTDIAAIEAELKTLNPPAAPAEPRQQ
PKRAPLPAQFPRTVIRHEPQNTQCACGCPLQRIGEDISEKLDYTPGVFTVEQHVRGKWACRQCETLIQAPVPAHVIDKGIPTAGLLAHVMVAKYADHLPL
YRQEKIFGRAGLAIARSTLAQWVGQTGVQLQPLVDALREAVLAQGVIHADETPVQMLAPGEKKTHRAYVWAYCTTPFADLKAVVYDFSPSRAGEHARNFM
GQWNGKLVCDDFAGYKASFEQGITEIGCMAHARRKFFDLHSANKSQLAEQALHSIAGLYEIERQARHMSDEERWRIRQEKSSPILDALHDWMLAQRDRVP
NGSATAKALDYSLKRWLALTRYLEDGAVPIDNNQVENQIRPWALGRSNWLFAGSLRSGKRAAAIMSLIQSARLNGHDPYAYLKDVLMRLPTQRASEISQL
LPHQWIQPEAGM
PKRAPLPAQFPRTVIRHEPQNTQCACGCPLQRIGEDISEKLDYTPGVFTVEQHVRGKWACRQCETLIQAPVPAHVIDKGIPTAGLLAHVMVAKYADHLPL
YRQEKIFGRAGLAIARSTLAQWVGQTGVQLQPLVDALREAVLAQGVIHADETPVQMLAPGEKKTHRAYVWAYCTTPFADLKAVVYDFSPSRAGEHARNFM
GQWNGKLVCDDFAGYKASFEQGITEIGCMAHARRKFFDLHSANKSQLAEQALHSIAGLYEIERQARHMSDEERWRIRQEKSSPILDALHDWMLAQRDRVP
NGSATAKALDYSLKRWLALTRYLEDGAVPIDNNQVENQIRPWALGRSNWLFAGSLRSGKRAAAIMSLIQSARLNGHDPYAYLKDVLMRLPTQRASEISQL
LPHQWIQPEAGM
Blast result :
Comments
ISSal1 is 61% (orfA), 93% (orfB) and 91%(orfC, the transposase) aa similar to ISPpu14.
References
1] Iain C. Clark (2014) Direct submission to ISfinder
2] Iain C. Clark, Ryan A. Melnyk, Anna Engelbrektson, John D. Coates (2013) mBio. Jul-Aug; 4(4): e00379-13
2] Iain C. Clark, Ryan A. Melnyk, Anna Engelbrektson, John D. Coates (2013) mBio. Jul-Aug; 4(4): e00379-13