ISHvo17
- Family IS200/IS605
- Group IS1341
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
CP001956 | ND | Haloferax volcanii | Haloferax volcanii DS2 |
DNA section
IS Length : 1508 bp
Ends
Left end : ACATGGCGAGGAGAATACCCGCGCCTAAAGGCGCGGGATTAATCCGTCAACCCCTCCACTAACCACGTTCGATAGCACGCTCGTTACTTTTAATATACTA II struct. : Yes
Right end : TGCGGTCGGGATTCCCGCGTTGACGAGACGCTCTGCGTCTCGTTCGCACACCAGAACACTCTGCGTTCTGGGGACGTCTTTAGGCACGGGAGGATGTCAA II struct. : No
Insertion site
Left flank | LE cleavage site | Right flank | RE cleavage site |
---|---|---|---|
CCGCGCGAAC | TTAT | ATCTCGTCAG | tcaa |
DNA sequence
ACATGGCGAGGAGAATACCCGCGCCTAAAGGCGCGGGATTAATCCGTCAACCCCTCCACTAACCACGTTCGATAGCACGCTCGTTACTTTTAATATACTA
ATTCTTATAAGTATTTATAACCATAGTCAGATGCTGGAGACAACCCGAACCTATCGAGCGACAATCGTCAATCACTCGCAAGTGAGTGACGACCTCGATG
ACTGCGGACACTCCGCGTCGAAACTGTGGAACGTCGCCCGCTACCACATCCAGCAAGAATGGAACGATACCGGCGAGATTCCGTCTGAAGCCGACCTCAA
GCGCGAATTAAAAGACCACGAACGATATAGTGACCTCCATTCTCAGTCAAGTCAGCGCGTTCTCGAAGAACTCGCTGAGTCGTTCACCGGTTGGTTCAAA
AAGCGCAAGAACGGCGACACAGATGCGAATCCGCCCGGCTACCGAAAGCGAGGCGACAACCACCCACGCTCCACCGTGACGTGGAAGCAGCACGGCATCA
AACACGACACCTCGAACAATAGGCTCCGTCTCAGCAAGGGGTTCAACCTCAAAAGCCACCGTTCGGACTTCATCCTCTGCGAGTACGAGACGCGTCCGGA
CGTGACCGTAGAGAACATCCAGCAAGTGCGAGCCGTATGGAACGGCGACAGATGGGAACTGCACCTCGTCTGCAAGGTCGAAATCCCCGTCGAGGACGCT
CCCGGCGATAACGCCGCAGGTATCGACCTCGGCATCAAGAACTACCTCGCCATCGCTTACGACGACGGTGAGGCGGAGTTGTATTCGGGGAACGTGCTGA
AACAGGACAAACACTACTTCACCCGTGACGAGTACGATACCGAAGGCGAGAACGGGCCGTCACGTCGTGCGCTTCGCGCTCGCCAGAAGCTCTCGCGTCG
GAAAGACCACTTCCTGCACGCACTCTCCAAGCACATCGTCGAGCAGTGTATCGACCACGAGGTCGGTCGTATCGCCGTCGGTGACTTGAGCGATATTCGA
GAGGATGAAAATGGTGACTCTCGGAATTGGGGTACACGTAGAAATAAGAAACTCCACGGCTGGGAGTTCGACCGGTTCACTCGTCTGCTCGAATACAAGG
CCGAAGAACACGGGATTCTCGTAGACCGCAAGAGTGAGCGAGATACGTCAAAGACGTGTTCGTGCTGTGGGCGGAAGCGTGAGGCGAAGCGCGTGGAGCG
TGGGTTGTACGTCTGTGAGTCGTGCGGTGTGACGATGAACGCGGACGTGAACGGTGCGGTCAACATTCGCAGAAAGATAACTCAGAATCCTCCGACGGAG
GATATGAGTAACGGTCGTTTGGCACGGCCAGTAGCCTACCTGTTCACTCAAACCTCGGGGCGTTTTGCACCGAGCGAGCAGGCGGGTTGCAAACCCTAAT
ATCCCAACTGCGGTCGGGATTCCCGCGTTGACGAGACGCTCTGCGTCTCGTTCGCACACCAGAACACTCTGCGTTCTGGGGACGTCTTTAGGCACGGGAG
GATGTCAA
ATTCTTATAAGTATTTATAACCATAGTCAGATGCTGGAGACAACCCGAACCTATCGAGCGACAATCGTCAATCACTCGCAAGTGAGTGACGACCTCGATG
ACTGCGGACACTCCGCGTCGAAACTGTGGAACGTCGCCCGCTACCACATCCAGCAAGAATGGAACGATACCGGCGAGATTCCGTCTGAAGCCGACCTCAA
GCGCGAATTAAAAGACCACGAACGATATAGTGACCTCCATTCTCAGTCAAGTCAGCGCGTTCTCGAAGAACTCGCTGAGTCGTTCACCGGTTGGTTCAAA
AAGCGCAAGAACGGCGACACAGATGCGAATCCGCCCGGCTACCGAAAGCGAGGCGACAACCACCCACGCTCCACCGTGACGTGGAAGCAGCACGGCATCA
AACACGACACCTCGAACAATAGGCTCCGTCTCAGCAAGGGGTTCAACCTCAAAAGCCACCGTTCGGACTTCATCCTCTGCGAGTACGAGACGCGTCCGGA
CGTGACCGTAGAGAACATCCAGCAAGTGCGAGCCGTATGGAACGGCGACAGATGGGAACTGCACCTCGTCTGCAAGGTCGAAATCCCCGTCGAGGACGCT
CCCGGCGATAACGCCGCAGGTATCGACCTCGGCATCAAGAACTACCTCGCCATCGCTTACGACGACGGTGAGGCGGAGTTGTATTCGGGGAACGTGCTGA
AACAGGACAAACACTACTTCACCCGTGACGAGTACGATACCGAAGGCGAGAACGGGCCGTCACGTCGTGCGCTTCGCGCTCGCCAGAAGCTCTCGCGTCG
GAAAGACCACTTCCTGCACGCACTCTCCAAGCACATCGTCGAGCAGTGTATCGACCACGAGGTCGGTCGTATCGCCGTCGGTGACTTGAGCGATATTCGA
GAGGATGAAAATGGTGACTCTCGGAATTGGGGTACACGTAGAAATAAGAAACTCCACGGCTGGGAGTTCGACCGGTTCACTCGTCTGCTCGAATACAAGG
CCGAAGAACACGGGATTCTCGTAGACCGCAAGAGTGAGCGAGATACGTCAAAGACGTGTTCGTGCTGTGGGCGGAAGCGTGAGGCGAAGCGCGTGGAGCG
TGGGTTGTACGTCTGTGAGTCGTGCGGTGTGACGATGAACGCGGACGTGAACGGTGCGGTCAACATTCGCAGAAAGATAACTCAGAATCCTCCGACGGAG
GATATGAGTAACGGTCGTTTGGCACGGCCAGTAGCCTACCTGTTCACTCAAACCTCGGGGCGTTTTGCACCGAGCGAGCAGGCGGGTTGCAAACCCTAAT
ATCCCAACTGCGGTCGGGATTCCCGCGTTGACGAGACGCTCTGCGTCTCGTTCGCACACCAGAACACTCTGCGTTCTGGGGACGTCTTTAGGCACGGGAG
GATGTCAA
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1269 bp | 422 aa | 131 | 1399 | + | No |
AG : TnpB
ORF sequence :
MLETTRTYRATIVNHSQVSDDLDDCGHSASKLWNVARYHIQQEWNDTGEIPSEADLKRELKDHERYSDLHSQSSQRVLEELAESFTGWFKKRKNGDTDAN
PPGYRKRGDNHPRSTVTWKQHGIKHDTSNNRLRLSKGFNLKSHRSDFILCEYETRPDVTVENIQQVRAVWNGDRWELHLVCKVEIPVEDAPGDNAAGIDL
GIKNYLAIAYDDGEAELYSGNVLKQDKHYFTRDEYDTEGENGPSRRALRARQKLSRRKDHFLHALSKHIVEQCIDHEVGRIAVGDLSDIREDENGDSRNW
GTRRNKKLHGWEFDRFTRLLEYKAEEHGILVDRKSERDTSKTCSCCGRKREAKRVERGLYVCESCGVTMNADVNGAVNIRRKITQNPPTEDMSNGRLARP
VAYLFTQTSGRFAPSEQAGCKP
PPGYRKRGDNHPRSTVTWKQHGIKHDTSNNRLRLSKGFNLKSHRSDFILCEYETRPDVTVENIQQVRAVWNGDRWELHLVCKVEIPVEDAPGDNAAGIDL
GIKNYLAIAYDDGEAELYSGNVLKQDKHYFTRDEYDTEGENGPSRRALRARQKLSRRKDHFLHALSKHIVEQCIDHEVGRIAVGDLSDIREDENGDSRNW
GTRRNKKLHGWEFDRFTRLLEYKAEEHGILVDRKSERDTSKTCSCCGRKREAKRVERGLYVCESCGVTMNADVNGAVNIRRKITQNPPTEDMSNGRLARP
VAYLFTQTSGRFAPSEQAGCKP
Blast result :
Comments
ISHvo17 is 84% (TnpB) aa similar to ISHxa1.
Comparing to ISH35, there is an insertion of 57 nts (TGACGAGACGCTCTGCGTCTCGTTCGCACACCAGAACGCTGTGCGTTCTGGGGACGA) inside the rigth end of the sequence. This inactive the RE.
Comparing to ISH35, there is an insertion of 57 nts (TGACGAGACGCTCTGCGTCTCGTTCGCACACCAGAACGCTGTGCGTTCTGGGGACGA) inside the rigth end of the sequence. This inactive the RE.
References
1] Hartman, A.L., Norais, C., Badger, J.H., Delmas, S., Haldenby, S., Madupu, R., Robinson, J., Khouri, H., Ren, Q., Lowe, T.M., Maupin-Furlow, J., Pohlschroder, M., Daniels, C., Pfeiffer, F.,
Allers, T., Eisen, J.A. (2010) PLoS ONE 5, E9605-E9605
Allers, T., Eisen, J.A. (2010) PLoS ONE 5, E9605-E9605