ISHvo11
- Family IS4
- Group ISH8
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
CP001955 | ND | Haloferax volcanii | Haloferax volcanii DS2 Haloferax volcanii DS2p plasmid pHV4 Haloferax volcanii_DS2p plasmid pHV1 |
DNA section
IS Length : 1445 bp
Ends
IR Length : 15/16
IRL : CATCCGTTCTAGTTTAACGAAGAATCCAGTTGCTGTCTGTTGATTTGATA
IRR : CATGCGTTCTAGTTTAGTAGCGATCAAAGCCGAACTCACCTCGTTCAACC
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
GCCCGATATTAGCCGGCGAGAG | GTGATGCAACAGACACTTGCTG | 0 | |
CGAGGGAGAAGAGTGATGCAAC | CCGGCGAGAGTTCGCTGATATC | 0 | |
CGTCGAATCGAG | GCGGTGGGTC | CATCCGTTCTAG | 10 |
CTAGAACGCATG | GCGGTGGGTC | AAAGAAAATGAA | 10 |
TGAGAACACTAA | GGCCGAAGAG | GAAACTGCAGCG | 10 |
GGTAACTCCCGA | CCGGGCTAGC | CAACAGTGGGAG | 10 |
CGAATCCGATTG | GAGCAGGTCC | ATGATGATACTC | 10 |
ACAGGTTCGCTG | GCGTGACGGC | GTCGAATGCCCC | 10 |
TCAGCGCGCAAC | ACAATAACAT | ACAACAACTGTG | 10 |
TAGGGGTCGGAC | CCCCGAAGATGA | 0 | |
TCCACGCGTACG | GCTGGCCCACGA | 0 | |
TTATGTCGGGGC | GAACTACGACCA | 0 | |
ATGTTTGATATG | GTGACGGATGGT | 0 | |
TGGGTATCCAGT | GGTACCAGCCAT | 0 | |
TCGTCACCATAG | AGGCTACAACAA | 0 |
DNA sequence
CATCCGTTCTAGTTTAACGAAGAATCCAGTTGCTGTCTGTTGATTTGATATCGTCGCAACTACCTGATTGAGAAACCCGGTGGGAAGTATGACCTACAGC
CCACCGGATTCGGTCATAGTTGACCGGATTCAAAGAGCGTTTCCCTCTGATGAGTTGCGCGAGCGCGCTCGCGCAACGAATCTCGTCCAACGAGAGCGGA
AATTCGACATCGTTGCGCTGTTCTACACACTCTCGTTTGGCTTCGCTGCTGGCTCAGACCGCTCTCTCCAAGCATTTCTCGAACGCTACGTCGAGATGGC
TGACTGTGACGAACTCTCCTACGCATCGTTCCACGACTGGTTCGAACCAGGATTCGTTGCACTCCTTCGAGAGATTCTCGATGACGCAATCGAGAATCTC
GATACCGGACGAGAAGATTTGAACGGCCGTCTCGAACGCTTTCGAGACGTCCTCATTGCTGACGCAACCATCGTTTCGCTGTACCAGGACGCCGCTGATA
TCTACACAGCAACCGGCGACCATCAAGCCGAACTGAAACTTCACCTCACCGAATCTCTCTCGACTGGGCTCCCGACACGATTCCGGACAACCGATGGGAC
GACTCATGAACGGAGTCAGCTACCCACCGGCGAGTGGGTAGCTGACGCCCTCATCTTGCTCGATTTAGGCTTCTACGACTTCTGGTTGTTCGACCGAATC
GACCAGAACGGCGGGTGGTTCGTCTCCCGGGTGAAGGACAACGCGAACTTCGAGATCGTCGAAGAACTGCGAACGTGGCGAGGCAACAGCATTCCGCTGG
AAGGAGAGTCGCTGCAGGCCGTCCTTGAGGACCTGCAGCGACAGGAAATCGACGTACGCATCACGCTTTCATTCGAGCGCAAACGAGGGTCGGGCGCCAG
CGCGACCCGGTCGTTCCGATTGGTCGGCCTGCGTAACAAGGAGAGCGAAGAGTACCATCTGTATCTGACGAATCTGGCGAGAGAAAGCTACAGCGCGCCC
GATATCGCGCAGCTCTATCGGGCGCGCTGGGAGGTCGAACTGCTGTTCAAGGAGTTGAAGTCGCGGTTCGGCTTGGACGAGATCAAGACGACCGACGGCT
ACATCATCGAGGCGCTGATCATCATGGCCGCAATTTCGTTGATGATGAGTCGTGTAATCGTGGATGAGTTACGGTCGCTCGAGGCAAGACAGCGAGAGGG
CGAAGCCGCCGCAGACGCCGACTCGTCGGCGTCGCGGCTCCCTCGGCGTCGCTGTTCGCTCGCCGTGGAACGCCACGGTCATCTAATCCAGTTGTATCTC
ATGATCGAGTTGGGCTACGAACTGCCGGATTTGGACGAGCTGTTGCTGTGGGCGTCGCGTAATCCAAATCCACACAGGCAACGGTTACGTGAGCAGGTTG
AACGAGGTGAGTTCGGCTTTGATCGCTACTAAACTAGAACGCATG
CCACCGGATTCGGTCATAGTTGACCGGATTCAAAGAGCGTTTCCCTCTGATGAGTTGCGCGAGCGCGCTCGCGCAACGAATCTCGTCCAACGAGAGCGGA
AATTCGACATCGTTGCGCTGTTCTACACACTCTCGTTTGGCTTCGCTGCTGGCTCAGACCGCTCTCTCCAAGCATTTCTCGAACGCTACGTCGAGATGGC
TGACTGTGACGAACTCTCCTACGCATCGTTCCACGACTGGTTCGAACCAGGATTCGTTGCACTCCTTCGAGAGATTCTCGATGACGCAATCGAGAATCTC
GATACCGGACGAGAAGATTTGAACGGCCGTCTCGAACGCTTTCGAGACGTCCTCATTGCTGACGCAACCATCGTTTCGCTGTACCAGGACGCCGCTGATA
TCTACACAGCAACCGGCGACCATCAAGCCGAACTGAAACTTCACCTCACCGAATCTCTCTCGACTGGGCTCCCGACACGATTCCGGACAACCGATGGGAC
GACTCATGAACGGAGTCAGCTACCCACCGGCGAGTGGGTAGCTGACGCCCTCATCTTGCTCGATTTAGGCTTCTACGACTTCTGGTTGTTCGACCGAATC
GACCAGAACGGCGGGTGGTTCGTCTCCCGGGTGAAGGACAACGCGAACTTCGAGATCGTCGAAGAACTGCGAACGTGGCGAGGCAACAGCATTCCGCTGG
AAGGAGAGTCGCTGCAGGCCGTCCTTGAGGACCTGCAGCGACAGGAAATCGACGTACGCATCACGCTTTCATTCGAGCGCAAACGAGGGTCGGGCGCCAG
CGCGACCCGGTCGTTCCGATTGGTCGGCCTGCGTAACAAGGAGAGCGAAGAGTACCATCTGTATCTGACGAATCTGGCGAGAGAAAGCTACAGCGCGCCC
GATATCGCGCAGCTCTATCGGGCGCGCTGGGAGGTCGAACTGCTGTTCAAGGAGTTGAAGTCGCGGTTCGGCTTGGACGAGATCAAGACGACCGACGGCT
ACATCATCGAGGCGCTGATCATCATGGCCGCAATTTCGTTGATGATGAGTCGTGTAATCGTGGATGAGTTACGGTCGCTCGAGGCAAGACAGCGAGAGGG
CGAAGCCGCCGCAGACGCCGACTCGTCGGCGTCGCGGCTCCCTCGGCGTCGCTGTTCGCTCGCCGTGGAACGCCACGGTCATCTAATCCAGTTGTATCTC
ATGATCGAGTTGGGCTACGAACTGCCGGATTTGGACGAGCTGTTGCTGTGGGCGTCGCGTAATCCAAATCCACACAGGCAACGGTTACGTGAGCAGGTTG
AACGAGGTGAGTTCGGCTTTGATCGCTACTAAACTAGAACGCATG
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1350 bp | 450 aa | 80 | 1429 | + | No |
Chemistry : DDE
ORF sequence :
MGSMTYSPPDSVIVDRIQRAFPSDELRERARATNLVQRERKFDIVALFYTLSFGFAAGSDRSLQAFLERYVEMADCDELSYASFHDWFEPGFVALLREIL
DDAIENLDTGREDLNGRLERFRDVLIADATIVSLYQDAADIYTATGDHQAELKLHLTESLSTGLPTRFRTTDGTTHERSQLPTGEWVADALILLDLGFYD
FWLFDRIDQNGGWFVSRVKDNANFEIVEELRTWRGNSIPLEGESLQAVLEDLQRQEIDVRITLSFERKRGSGASATRSFRLVGLRNKESEEYHLYLTNLA
RESYSAPDIAQLYRARWEVELLFKELKSRFGLDEIKTTDGYIIEALIIMAAISLMMSRVIVDELRSLEARQREGEAAADADSSASRLPRRRCSLAVERHG
HLIQLYLMIELGYELPDLDELLLWASRNPNPHRQRLREQVERGEFGFDRY
DDAIENLDTGREDLNGRLERFRDVLIADATIVSLYQDAADIYTATGDHQAELKLHLTESLSTGLPTRFRTTDGTTHERSQLPTGEWVADALILLDLGFYD
FWLFDRIDQNGGWFVSRVKDNANFEIVEELRTWRGNSIPLEGESLQAVLEDLQRQEIDVRITLSFERKRGSGASATRSFRLVGLRNKESEEYHLYLTNLA
RESYSAPDIAQLYRARWEVELLFKELKSRFGLDEIKTTDGYIIEALIIMAAISLMMSRVIVDELRSLEARQREGEAAADADSSASRLPRRRCSLAVERHG
HLIQLYLMIELGYELPDLDELLLWASRNPNPHRQRLREQVERGEFGFDRY
Blast result :
Comments
ISHvo11 is 96% aa similar to ISH5.
A tandem pair of ISHvo11A transposons (97% seq_id) is separated by 10 bp (GCGGTGGGTC) which are a target duplication for each of the elements.
A 230 kb inversion between an oppositely oriented pair of ISHvo11 transposons has swapped the adjacent sequences (CCGGCGAGAG,GTGATGCAAC) which initially were target duplications : GCCCGATATTAG (CCGGCGAGAG/GTGATGCAAC) AGACACTTGCTG ; CGAGGGAGAAGA (GTGATGCAAC/CCGGCGAGAG) TTCGCTGATATC.
File updated the 29/01/2015 with new insertion sites.
A tandem pair of ISHvo11A transposons (97% seq_id) is separated by 10 bp (GCGGTGGGTC) which are a target duplication for each of the elements.
A 230 kb inversion between an oppositely oriented pair of ISHvo11 transposons has swapped the adjacent sequences (CCGGCGAGAG,GTGATGCAAC) which initially were target duplications : GCCCGATATTAG (CCGGCGAGAG/GTGATGCAAC) AGACACTTGCTG ; CGAGGGAGAAGA (GTGATGCAAC/CCGGCGAGAG) TTCGCTGATATC.
File updated the 29/01/2015 with new insertion sites.
References
1] Hartman, A.L., Norais, C., Badger, J.H., Delmas, S., Haldenby, S., Madupu, R., Robinson, J., Khouri, H., Ren, Q., Lowe, T.M., Maupin-Furlow, J., Pohlschroder, M., Daniels, C., Pfeiffer, F.,
Allers, T., Eisen, J.A. (2010) PLoS ONE 5, E9605-E9605
Allers, T., Eisen, J.A. (2010) PLoS ONE 5, E9605-E9605