ISHhu2
- Family IS200/IS605
- Group IS605
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
LN831303 | ND | Halobacterium hubeiense | Halobacterium hubeiense |
DNA section
IS Length : 1846 bp
Ends
Left end : AGCGAGAGAATCCTACCCTTTAGGGCGGGCGTGAATCGCGTACGCTCCGTGCCACGGACCACCGTCGGTTGCAGGCCGAATACCCCAGGACTGCAACCCT II struct. : Yes
Right end : GCTCACGGCCTACGAAGAGTCGGAACCCTCTGCCAGCGACGACTGACTGGTATTCCCCATGCGTGGGAAGCCTCGCCGTTTACGGCGAGGAGGATGTCAC II struct. : Yes
Insertion site
Left flank | LE cleavage site | Right flank | RE cleavage site |
---|---|---|---|
ATTCGGCGACAGCTATCTTC | TAAC | CGGGAGCCGATG | TCAC |
DNA sequence
AGCGAGAGAATCCTACCCTTTAGGGCGGGCGTGAATCGCGTACGCTCCGTGCCACGGACCACCGTCGGTTGCAGGCCGAATACCCCAGGACTGCAACCCT
TTATTAGAATTGGGTGTATAGAAATCAATACGGCTAAATGAAGTACAACCTCGAAACCGGGTCGCACACGGTCTACGCGCTCCAATATCACTTCGTGACC
GTCACGAAGTACCGCGCAGACCTCCTCACCGACGAAGTCGCAGAACGGGTCGGTGAGATTGCTAGCGACATCTCAGAGGACTTCGGCGTGAACATTCAGA
ATGTCAACGGCGGTTCCGACCACGTTCATATCTTGTTCACGGCGAAGCCAACGACCGACCTCACCAAGTTTATCAACTCACTCAAGGGCGTTACGTCCCG
CAAAATCCGTGACGAGAATCCCGAGATTCGGCAGGCGCTCGACAAGGCGTTCTGGCAACCGGGGTACTTCCTCGCCACGACCGGCCAAGTGAGCATCGAC
GTGCTGATGGAGTACGTGGAGGAGCAGTAGCGATGTCCACGACCGCCACGAAGACGTTGCAGGCGACGTTCGCGCCACCGACGGCGCACAAGCAGTCGAA
ACTCAACGACCTGCTCGAAACGTATCGTGACGGTCTGCAAGAGGCGTTCGACTCCGGGGCGAGTACCATGTCGGCGGTGAGCGACATCGTGACGCCCTAC
GACCTGCCGTATCAGGCCAAAGCCGCCCTCTGCAACTACGTCCCGAAACTTCGGAAGACGTACAATGCCAAAGAGTTGGACGACGGCCACCCGATACGGC
TCACGAACCAAGCCACGAAGTTCGACCACTCCGCCGAACGCGACTACGAGTTTACATGGTGGGTTCCGCGTCCCGGCCGGGGAACGAACTTCTGGATACC
GCTTCGCATCAACCCTGAACAGGAAGACCTCTGGCATGACCTCGTATCGGAGGATGCGAAGGCGGGCGAGATACGGCTTCAGAAACACCGGAAGAACTGG
GTACTGCACGTCACCGTCGAGTACCCGGTCGAAGAACCAGCGACGGACGGTGACGTCACGCACATCGGCTTAGACATCGGAGAAACCGCCCTCATCACGG
GCTGTGCCCTCAAGGACGGTTCTCCGACTGACCCGTTTGTGTGTAGCGGAAGCAGAGCGAAGCATCTCCGCAAAGAGATGCACACGACCCTGAAACGCCT
CCAAGAGCGTGACGCATCCGAGTGGCGTATCGAAGACCGATTCAACCACTACCAGAACGCGCTCACCGACATCGTGGAGAAGGCGTCTCGGCAAGCCGTC
GAGTACGCCAAGCAGTTTGAACACCCGGTGTTGGTGATGGAGGACTTGACGTACATCCGCGAACGTCTTGACTACGGGAAGTATATGAACCGTCGCCTTC
ACTCGTGGGCGTTCGCCCGACTGCAAGGGCGCATCGAGGACAAGGCGACGGAAGCAGGTATCCCGGTCGAGTACGTGAATCCGGCGTACACCTCGCAGAC
GTGCCACTTGTGCCACCGTATCGGTCGGCGGGACTCCCAAGCCGAGTTCCGGTGTCCGAACAACGACTGCCACGTGTCGACGTTTCAGGCCGACATCAAC
GCTGCCGCGAATATCGCACGACGGGTTGACCCGTGGGGAGAGAGCGTCCCGCTTGACAAGGCCGGACGCGATGACTCGCCTCGGGATGGGAGCGGTTGTG
ACACCGCCACGACTCACCGTGAGAAGAGCGTACCAGCGCAGATGACGCTCACGGCCTACGAAGAGTCGGAACCCTCTGCCAGCGACGACTGACTGGTATT
CCCCATGCGTGGGAAGCCTCGCCGTTTACGGCGAGGAGGATGTCAC
TTATTAGAATTGGGTGTATAGAAATCAATACGGCTAAATGAAGTACAACCTCGAAACCGGGTCGCACACGGTCTACGCGCTCCAATATCACTTCGTGACC
GTCACGAAGTACCGCGCAGACCTCCTCACCGACGAAGTCGCAGAACGGGTCGGTGAGATTGCTAGCGACATCTCAGAGGACTTCGGCGTGAACATTCAGA
ATGTCAACGGCGGTTCCGACCACGTTCATATCTTGTTCACGGCGAAGCCAACGACCGACCTCACCAAGTTTATCAACTCACTCAAGGGCGTTACGTCCCG
CAAAATCCGTGACGAGAATCCCGAGATTCGGCAGGCGCTCGACAAGGCGTTCTGGCAACCGGGGTACTTCCTCGCCACGACCGGCCAAGTGAGCATCGAC
GTGCTGATGGAGTACGTGGAGGAGCAGTAGCGATGTCCACGACCGCCACGAAGACGTTGCAGGCGACGTTCGCGCCACCGACGGCGCACAAGCAGTCGAA
ACTCAACGACCTGCTCGAAACGTATCGTGACGGTCTGCAAGAGGCGTTCGACTCCGGGGCGAGTACCATGTCGGCGGTGAGCGACATCGTGACGCCCTAC
GACCTGCCGTATCAGGCCAAAGCCGCCCTCTGCAACTACGTCCCGAAACTTCGGAAGACGTACAATGCCAAAGAGTTGGACGACGGCCACCCGATACGGC
TCACGAACCAAGCCACGAAGTTCGACCACTCCGCCGAACGCGACTACGAGTTTACATGGTGGGTTCCGCGTCCCGGCCGGGGAACGAACTTCTGGATACC
GCTTCGCATCAACCCTGAACAGGAAGACCTCTGGCATGACCTCGTATCGGAGGATGCGAAGGCGGGCGAGATACGGCTTCAGAAACACCGGAAGAACTGG
GTACTGCACGTCACCGTCGAGTACCCGGTCGAAGAACCAGCGACGGACGGTGACGTCACGCACATCGGCTTAGACATCGGAGAAACCGCCCTCATCACGG
GCTGTGCCCTCAAGGACGGTTCTCCGACTGACCCGTTTGTGTGTAGCGGAAGCAGAGCGAAGCATCTCCGCAAAGAGATGCACACGACCCTGAAACGCCT
CCAAGAGCGTGACGCATCCGAGTGGCGTATCGAAGACCGATTCAACCACTACCAGAACGCGCTCACCGACATCGTGGAGAAGGCGTCTCGGCAAGCCGTC
GAGTACGCCAAGCAGTTTGAACACCCGGTGTTGGTGATGGAGGACTTGACGTACATCCGCGAACGTCTTGACTACGGGAAGTATATGAACCGTCGCCTTC
ACTCGTGGGCGTTCGCCCGACTGCAAGGGCGCATCGAGGACAAGGCGACGGAAGCAGGTATCCCGGTCGAGTACGTGAATCCGGCGTACACCTCGCAGAC
GTGCCACTTGTGCCACCGTATCGGTCGGCGGGACTCCCAAGCCGAGTTCCGGTGTCCGAACAACGACTGCCACGTGTCGACGTTTCAGGCCGACATCAAC
GCTGCCGCGAATATCGCACGACGGGTTGACCCGTGGGGAGAGAGCGTCCCGCTTGACAAGGCCGGACGCGATGACTCGCCTCGGGATGGGAGCGGTTGTG
ACACCGCCACGACTCACCGTGAGAAGAGCGTACCAGCGCAGATGACGCTCACGGCCTACGAAGAGTCGGAACCCTCTGCCAGCGACGACTGACTGGTATT
CCCCATGCGTGGGAAGCCTCGCCGTTTACGGCGAGGAGGATGTCAC
Protein section
ORF number : 2
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
393 bp | 130 aa | 138 | 530 | + | No |
Chemistry : Y1
ORF sequence :
MKYNLETGSHTVYALQYHFVTVTKYRADLLTDEVAERVGEIASDISEDFGVNIQNVNGGSDHVHILFTAKPTTDLTKFINSLKGVTSRKIRDENPEIRQA
LDKAFWQPGYFLATTGQVSIDVLMEYVEEQ
LDKAFWQPGYFLATTGQVSIDVLMEYVEEQ
Blast result :ORF 2
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1260 bp | 419 aa | 533 | 1792 | + | No |
AG : TnpB
ORF sequence :
MSTTATKTLQATFAPPTAHKQSKLNDLLETYRDGLQEAFDSGASTMSAVSDIVTPYDLPYQAKAALCNYVPKLRKTYNAKELDDGHPIRLTNQATKFDHS
AERDYEFTWWVPRPGRGTNFWIPLRINPEQEDLWHDLVSEDAKAGEIRLQKHRKNWVLHVTVEYPVEEPATDGDVTHIGLDIGETALITGCALKDGSPTD
PFVCSGSRAKHLRKEMHTTLKRLQERDASEWRIEDRFNHYQNALTDIVEKASRQAVEYAKQFEHPVLVMEDLTYIRERLDYGKYMNRRLHSWAFARLQGR
IEDKATEAGIPVEYVNPAYTSQTCHLCHRIGRRDSQAEFRCPNNDCHVSTFQADINAAANIARRVDPWGESVPLDKAGRDDSPRDGSGCDTATTHREKSV
PAQMTLTAYEESEPSASDD
AERDYEFTWWVPRPGRGTNFWIPLRINPEQEDLWHDLVSEDAKAGEIRLQKHRKNWVLHVTVEYPVEEPATDGDVTHIGLDIGETALITGCALKDGSPTD
PFVCSGSRAKHLRKEMHTTLKRLQERDASEWRIEDRFNHYQNALTDIVEKASRQAVEYAKQFEHPVLVMEDLTYIRERLDYGKYMNRRLHSWAFARLQGR
IEDKATEAGIPVEYVNPAYTSQTCHLCHRIGRRDSQAEFRCPNNDCHVSTFQADINAAANIARRVDPWGESVPLDKAGRDDSPRDGSGCDTATTHREKSV
PAQMTLTAYEESEPSASDD
Blast result :
Comments
ISHhu2 is 99% (TnpA : the transposase) aa and 97% (TbpB) aa similar to ISHal1.
References
1] F. Pfeiffer (2013) Direct submission
2] Jaakkola S.T., Pfeiffer F., Ravantti J.J., Guo Q., Liu Y., Chen X., Ma H., Yang C., Oksanen H.M., Bamford D.H. (2015) Environ Microbiol. doi: 10.1111/1462-2920.13130
2] Jaakkola S.T., Pfeiffer F., Ravantti J.J., Guo Q., Liu Y., Chen X., Ma H., Yang C., Oksanen H.M., Bamford D.H. (2015) Environ Microbiol. doi: 10.1111/1462-2920.13130